RLG00000008374

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000435
Physical Location & Seq
Reverse (-)
29746084 .. 29748405
2322 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008374

Sequence Viewer

Length: 990 bp
ATGGCGGGTGTGAGGAGGATGAAGCTCGGGTCACAAGGCCTGGAGGTCTCAGCCCAAGGACTGGGCTGCATGGGCATGTCAGCCTTCTATGGCCCCCCGAAGCCCGAAGCCGACATGATCAAGCTCATCCACCATGCTGTCGACTCCGGCGTCACCTTCCTCGACACCTCTGACGTCTACGGTCCCCACACCAACGAAATTCTCCTCGGCAAGGCTTTGAGTGGAGGGGTGAGAGACAAGGTTGAACTGGCCACCAAATGCGGTATCAGGTTTGCGGACAACAAAATGGAGGTTCACGGCGACCCGGCATATGTGAGAGCTGCTTGTGAAGGAAGCTTGAAACGCCTTGGTGTTGCTTCTGTTGATCTCTATTATCAGCATAGGATTGACACCCGTGTCCCCATTGAAGTCACGGTGGGGGAGCTCAAGAAGCTAATTGAAGAGGGTAAAATAAAGTACATCGGTCTGTCTGAGGCGTCAGCTTCAACAATAAGAAGAGCCCATGCTGTTCATCCAATAACTGCTGTGCAGCTGGAGTGGTCCTTGTGGGAACTTGGCATTGGCATTGTTGCATACAGTCCTCTAGGAAGAGGATTCTTGTCATCGGGGGCAAATTTCATTGAAAATCTTCCCAATGATGATGCTCGAAAGAATTTTCCCAGGTTCCAAGCTGAAAACCTAGAGCATAATAAAACAATATTTGAGCGAGTAAGTGATCTTGCAGCAAGGAAGGGTTGCACCCCATCTCAACTAGCACTGGCCTGGGTTCATCACCAAGGAAATGATGTGTGTCCTATACCCGGAACCACCAAGATTGAGAATTTTAACCAAAACATTAAGGCTCTGTCTGTGAAACTGACACCAGAAGAAATGGATGAGCTTGAATCTTTTGCTTCCGCAGATGCTGTTAAGGGTGACAGGTATCAGACTGGCAACAGTACTTGGATGAACTCTGACACTCCACCACTATCTTCATGGAAAGCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

330

Amino Acids

35.93

Weight (kDa)

6.38

Isoelectric Point (pI)

30.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 297 3.3e-63 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 149, 395
AatII GACGTC 1 cut(s) 177
AccB7I CCANNNNNTGG 1 cut(s) 61
AccI GTMKAC 2 cut(s) 141, 177
AciI CCGC 4 cut(s) 5, 261, 275, 897
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 4 cut(s) 198, 613, 652, 820
AcyI GRCGYC 3 cut(s) 150, 174, 476
AfaI GTAC 2 cut(s) 458, 940
AfiI CCNNNNNNNGG 3 cut(s) 61, 211, 800
AgsI TTSAA 7 cut(s) 245, 340, 407, 440, 486, 623, 884
AjnI CCWGG 3 cut(s) 39, 659, 761
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 2 cut(s) 52, 228
AlwNI CAGNNNCTG 1 cut(s) 905
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 4 cut(s) 37, 91, 249, 759
ApeKI GCWGC 4 cut(s) 66, 320, 529, 722
ApoI RAATTY 4 cut(s) 198, 613, 652, 820
Asp700I GAANNNNTTC 1 cut(s) 627
AspS9I GGNCC 3 cut(s) 92, 182, 540
AsuC2I CCSGG 2 cut(s) 305, 801
AsuHPI GGTGA 4 cut(s) 145, 241, 764, 926
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 2 cut(s) 182, 540
BalI TGGCCA 1 cut(s) 251
BanII GRGCYC 2 cut(s) 426, 502
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 4 cut(s) 53, 307, 541, 734
BccI CCATC 1 cut(s) 751
BceAI ACGGC 1 cut(s) 313
BciT130I CCWGG 3 cut(s) 41, 661, 763
BclI TGATCA 1 cut(s) 117
BcnI CCSGG 2 cut(s) 305, 801
BcoDI GTCTC 2 cut(s) 52, 228
BfaI CTAG 3 cut(s) 584, 680, 752
BisI GCNGC 4 cut(s) 67, 321, 530, 723
BlsI GCNGC 4 cut(s) 68, 322, 531, 724
BmcAI AGTACT 1 cut(s) 940
Bme1390I CCNGG 5 cut(s) 41, 305, 661, 763, 801
Bme18I GGWCC 2 cut(s) 182, 540
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 3 cut(s) 92, 182, 540
BmiI GGNNCC 4 cut(s) 94, 184, 665, 805
BmrFI CCNGG 5 cut(s) 41, 305, 661, 763, 801
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 631, 892
BmuI ACTGGG 1 cut(s) 71
BpmI CTGGAG 2 cut(s) 62, 554
BpuEI CTTGAG 1 cut(s) 410
BpuMI CCSGG 2 cut(s) 305, 801
BsaHI GRCGYC 3 cut(s) 150, 174, 476
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 6 cut(s) 55, 205, 346, 659, 762, 775
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 211, 800
Bse1I ACTGG 4 cut(s) 66, 252, 762, 934
BseBI CCWGG 3 cut(s) 41, 661, 763
BseDI CCNNGG 6 cut(s) 55, 205, 346, 659, 762, 775
BseGI GGATG 5 cut(s) 24, 126, 511, 880, 951
BseLI CCNNNNNNNGG 3 cut(s) 61, 211, 800
BseMII CTCAG 2 cut(s) 63, 462
BseNI ACTGG 4 cut(s) 66, 252, 762, 934
BseRI GAGGAG 2 cut(s) 28, 194
BseXI GCAGC 4 cut(s) 53, 307, 541, 734
BsgI GTGCAG 1 cut(s) 548
BshFI GGCC 4 cut(s) 39, 93, 251, 761
BsiHKAI GWGCWC 1 cut(s) 426
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 3 cut(s) 147, 305, 801
BslFI GGGAC 2 cut(s) 168, 383
BslI CCNNNNNNNGG 3 cut(s) 61, 211, 800
BsmAI GTCTC 2 cut(s) 52, 228
BsmFI GGGAC 2 cut(s) 168, 383
BsnI GGCC 4 cut(s) 39, 93, 251, 761
Bso31I GGTCTC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 426, 502
Bsp143I GATC 3 cut(s) 117, 364, 715
BspACI CCGC 4 cut(s) 5, 261, 275, 897
BspANI GGCC 4 cut(s) 39, 93, 251, 761
BspCNI CTCAG 2 cut(s) 62, 463
BspLI GGNNCC 4 cut(s) 94, 184, 665, 805
BspQI GCTCTTC 1 cut(s) 490
BspTNI GGTCTC 1 cut(s) 52
BsrI ACTGG 4 cut(s) 66, 252, 762, 934
BssECI CCNNGG 6 cut(s) 55, 205, 346, 659, 762, 775
BssMI GATC 3 cut(s) 117, 364, 715
BssNI GRCGYC 3 cut(s) 150, 174, 476
BssT1I CCWWGG 3 cut(s) 55, 346, 775
Bst2UI CCWGG 3 cut(s) 41, 661, 763
Bst4CI ACNGT 4 cut(s) 182, 415, 578, 938
Bst6I CTCTTC 3 cut(s) 435, 490, 583
BstACI GRCGYC 3 cut(s) 150, 174, 476
BstDEI CTNAG 2 cut(s) 49, 471
BstENI CCTNNNNNAGG 1 cut(s) 209
BstF5I GGATG 5 cut(s) 24, 126, 511, 880, 951
BstKTI GATC 3 cut(s) 120, 367, 718
BstMAI GTCTC 2 cut(s) 52, 228
BstMBI GATC 3 cut(s) 117, 364, 715
BstMWI GCNNNNNNNGC 3 cut(s) 72, 342, 430
BstNI CCWGG 3 cut(s) 41, 661, 763
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 5 cut(s) 39, 303, 659, 761, 799
BstV1I GCAGC 4 cut(s) 53, 307, 541, 734
BsuRI GGCC 4 cut(s) 39, 93, 251, 761
BtsCI GGATG 5 cut(s) 24, 126, 511, 880, 951
BtsIMutI CAGTG 1 cut(s) 755
CaiI CAGNNNCTG 1 cut(s) 905
Cfr13I GGNCC 3 cut(s) 92, 182, 540
CseI GACGC 2 cut(s) 139, 465
Csp6I GTAC 2 cut(s) 457, 939
CspCI CAANNNNNGTGG 2 cut(s) 796, 831
CviAII CATG 6 cut(s) 70, 76, 115, 134, 503, 975
CviQI GTAC 2 cut(s) 457, 939
DdeI CTNAG 2 cut(s) 49, 471
DpnI GATC 3 cut(s) 119, 366, 717
DpnII GATC 3 cut(s) 117, 364, 715
DrdI GACNNNNNNGTC 2 cut(s) 149, 395
DseDI GACNNNNNNGTC 2 cut(s) 149, 395
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 3 cut(s) 435, 490, 583
EarI CTCTTC 3 cut(s) 435, 490, 583
Ecl136II GAGCTC 1 cut(s) 424
Eco130I CCWWGG 3 cut(s) 55, 346, 775
Eco147I AGGCCT 1 cut(s) 39
Eco24I GRGCYC 2 cut(s) 426, 502
Eco31I GGTCTC 1 cut(s) 52
Eco47I GGWCC 2 cut(s) 182, 540
Eco53kI GAGCTC 1 cut(s) 424
Eco88I CYCGRG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 424
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoRII CCWGG 3 cut(s) 39, 659, 761
EcoT14I CCWWGG 3 cut(s) 55, 346, 775
EcoT38I GRGCYC 2 cut(s) 426, 502
ErhI CCWWGG 3 cut(s) 55, 346, 775
FaeI CATG 6 cut(s) 73, 79, 118, 137, 506, 978
FaqI GGGAC 2 cut(s) 168, 383
FatI CATG 6 cut(s) 69, 75, 114, 133, 502, 974
FauNDI CATATG 1 cut(s) 310
FbaI TGATCA 1 cut(s) 117
FblI GTMKAC 2 cut(s) 141, 177
Fnu4HI GCNGC 4 cut(s) 67, 321, 530, 723
FokI GGATG 5 cut(s) 31, 113, 498, 887, 958
FriOI GRGCYC 2 cut(s) 426, 502
Fsp4HI GCNGC 4 cut(s) 67, 321, 530, 723
FspBI CTAG 3 cut(s) 584, 680, 752
GluI GCNGC 4 cut(s) 67, 321, 530, 723
GsuI CTGGAG 2 cut(s) 62, 554
HaeIII GGCC 4 cut(s) 39, 93, 251, 761
HapII CCGG 3 cut(s) 147, 305, 801
HgaI GACGC 2 cut(s) 139, 465
Hin1I GRCGYC 3 cut(s) 150, 174, 476
Hin1II CATG 6 cut(s) 73, 79, 118, 137, 506, 978
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 334
HinfI GANTC 3 cut(s) 143, 594, 884
HpaII CCGG 3 cut(s) 147, 305, 801
HphI GGTGA 4 cut(s) 145, 241, 764, 926
Hpy166II GTNNAC 3 cut(s) 142, 178, 295
Hpy188I TCNGA 4 cut(s) 172, 472, 927, 955
Hpy188III TCNNGA 1 cut(s) 427
Hpy8I GTNNAC 3 cut(s) 142, 178, 295
HpyAV CCTTC 4 cut(s) 94, 166, 323, 724
HpyCH4III ACNGT 4 cut(s) 182, 415, 578, 938
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 5 cut(s) 69, 529, 572, 722, 738
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 342, 430
HpyF3I CTNAG 2 cut(s) 49, 471
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 3 cut(s) 150, 174, 476
Hsp92II CATG 6 cut(s) 73, 79, 118, 137, 506, 978
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 3 cut(s) 117, 364, 715
LguI GCTCTTC 1 cut(s) 490
LmnI GCTCC 1 cut(s) 421
Lsp1109I GCAGC 4 cut(s) 53, 307, 541, 734
LweI GCATC 2 cut(s) 631, 892
MaeI CTAG 3 cut(s) 584, 680, 752
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 4 cut(s) 30, 151, 409, 914
MalI GATC 3 cut(s) 119, 366, 717
MboI GATC 3 cut(s) 117, 364, 715
MboII GAAGA 6 cut(s) 452, 507, 600, 620, 878, 963
MhlI GDGCHC 2 cut(s) 426, 502
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 5 cut(s) 198, 435, 613, 652, 820
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 1 cut(s) 137
Mox20I TGGCCA 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 627
MscI TGGCCA 1 cut(s) 251
MseI TTAA 3 cut(s) 825, 837, 909
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 3 cut(s) 147, 305, 801
MspR9I CCNGG 5 cut(s) 41, 305, 661, 763, 801
MvaI CCWGG 3 cut(s) 41, 661, 763
MwoI GCNNNNNNNGC 3 cut(s) 72, 342, 430
NciI CCSGG 2 cut(s) 305, 801
NdeI CATATG 1 cut(s) 310
NdeII GATC 3 cut(s) 117, 364, 715
NlaIII CATG 6 cut(s) 73, 79, 118, 137, 506, 978
NlaIV GGNNCC 4 cut(s) 94, 184, 665, 805
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 4 cut(s) 30, 151, 409, 914
NspI RCATGY 1 cut(s) 79
PceI AGGCCT 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 490
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 2 cut(s) 594, 884
PflMI CCANNNNNTGG 1 cut(s) 61
PkrI GCNGC 4 cut(s) 68, 322, 531, 724
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Psp124BI GAGCTC 1 cut(s) 426
Psp6I CCWGG 3 cut(s) 39, 659, 761
PspGI CCWGG 3 cut(s) 39, 659, 761
PspN4I GGNNCC 4 cut(s) 94, 184, 665, 805
PspPI GGNCC 3 cut(s) 92, 182, 540
PstNI CAGNNNCTG 1 cut(s) 905
PvuII CAGCTG 1 cut(s) 532
RsaI GTAC 2 cut(s) 458, 940
RsaNI GTAC 2 cut(s) 457, 939
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 426
SalI GTCGAC 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 490
SaqAI TTAA 3 cut(s) 825, 837, 909
SatI GCNGC 4 cut(s) 67, 321, 530, 723
Sau3AI GATC 3 cut(s) 117, 364, 715
Sau96I GGNCC 3 cut(s) 92, 182, 540
ScaI AGTACT 1 cut(s) 940
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 5 cut(s) 41, 305, 661, 763, 801
SduI GDGCHC 2 cut(s) 426, 502
SfaNI GCATC 2 cut(s) 631, 892
SinI GGWCC 2 cut(s) 182, 540
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 5 cut(s) 198, 435, 613, 652, 820
SseBI AGGCCT 1 cut(s) 39
SsiI CCGC 4 cut(s) 5, 261, 275, 897
SspI AATATT 1 cut(s) 699
SspMI CTAG 3 cut(s) 584, 680, 752
SstI GAGCTC 1 cut(s) 426
StuI AGGCCT 1 cut(s) 39
StyD4I CCNGG 5 cut(s) 39, 303, 659, 761, 799
StyI CCWWGG 3 cut(s) 55, 346, 775
TaaI ACNGT 4 cut(s) 182, 415, 578, 938
TaiI ACGT 1 cut(s) 177
TaqI TCGA 3 cut(s) 141, 162, 646
TaqII GACCGA 1 cut(s) 452
TasI AATT 5 cut(s) 198, 435, 613, 652, 820
TatI WGTACW 2 cut(s) 456, 938
TfiI GAWTC 2 cut(s) 594, 884
Tru1I TTAA 3 cut(s) 825, 837, 909
Tru9I TTAA 3 cut(s) 825, 837, 909
TscAI CASTG 1 cut(s) 762
TseFI GTSAC 4 cut(s) 30, 151, 409, 914
TseI GCWGC 4 cut(s) 66, 320, 529, 722
Tsp45I GTSAC 4 cut(s) 30, 151, 409, 914
TspDTI ATGAA 6 cut(s) 35, 500, 607, 758, 962, 963
TspRI CASTG 1 cut(s) 762
Van91I CCANNNNNTGG 1 cut(s) 61
VpaK11BI GGWCC 2 cut(s) 182, 540
XagI CCTNNNNNAGG 1 cut(s) 209
XapI RAATTY 4 cut(s) 198, 613, 652, 820
XceI RCATGY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 972
XmiI GTMKAC 2 cut(s) 141, 177
XmnI GAANNNNTTC 1 cut(s) 627
XspI CTAG 3 cut(s) 584, 680, 752
ZraI GACGTC 1 cut(s) 175
ZrmI AGTACT 1 cut(s) 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.