Rroxscaffold_5G00355730

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000435
Physical Location & Seq
Forward (+)
34626621 .. 34628638
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00355730.1

Sequence Viewer

Length: 636 bp
ATGAAAGCATTATGGCGTCAGGTGGGGGAGCTCAAGAAGCTAATTGAAGAAGGCAAAATAAAGTACATCGGTCTGTCTGAGGCGTCAGCTTCAACAATAAGAAGAGCCCATGCTGTTCATCCAATAACTGCTGTGCAGCTGGAGTGGTCCTTGTGGTCAAGAGATGTAGAGGAAGAAATAATCCCTACTTGTCGGGAACTTGGCATTGGCATTGTTGCATACAGTCCTCTAGGAAGAGGATTCTTATCATCGGGGGCAAATTTCATCGAAAATCTTCCCAATGATGATGCTCGAAAGAATTTTCCCAGGTTCCAAGCTGAAAACCTAGAGCATAATAAAACAATATTTGAGCGAGTAAGTGATCTTGCAGCAAGGAAGGGTTGCACCCCATCTCAACTAGCACTGGCCTGGGTTCATCACCAAGCAAATGATGTGTGTCCTATACCCGGAACCACCAAGATTGAGAATTTTAACCAGAACATTAAGGCTCTGTCTGTGAAACTGACACCAGAAGAAATGGCTGAGCTTGAATCTTTTGCTTCCGTAGATGCTGTTAAGGGTGACAGGTATCAGACTGGCAACAGTACTTGGATGAACTCTGACACTCCACCGCTGTCTTCATGGAAAGCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

211

Amino Acids

23.53

Weight (kDa)

6.23

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 7 - 179 2.3e-42 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 611
AcsI RAATTY 3 cut(s) 259, 298, 466
AcyI GRCGYC 2 cut(s) 16, 83
AfaI GTAC 2 cut(s) 65, 586
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 3 cut(s) 47, 93, 530
AjnI CCWGG 2 cut(s) 305, 407
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AluBI AGCT 6 cut(s) 31, 40, 89, 139, 317, 526
AluI AGCT 6 cut(s) 31, 40, 89, 139, 317, 526
Alw21I GWGCWC 1 cut(s) 33
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 2 cut(s) 136, 368
ApoI RAATTY 3 cut(s) 259, 298, 466
Asp700I GAANNNNTTC 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 147
AsuC2I CCSGG 1 cut(s) 447
AsuHPI GGTGA 2 cut(s) 410, 572
AvaII GGWCC 1 cut(s) 147
BanII GRGCYC 2 cut(s) 33, 109
BbsI GAAGAC 1 cut(s) 609
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 148, 380
BccI CCATC 1 cut(s) 397
BciT130I CCWGG 2 cut(s) 307, 409
BcnI CCSGG 1 cut(s) 447
BfaI CTAG 3 cut(s) 230, 326, 398
BisI GCNGC 2 cut(s) 137, 369
BlpI GCTNAGC 1 cut(s) 522
BlsI GCNGC 2 cut(s) 138, 370
BmcAI AGTACT 1 cut(s) 586
Bme1390I CCNGG 3 cut(s) 307, 409, 447
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 2 cut(s) 311, 451
BmrFI CCNGG 3 cut(s) 307, 409, 447
BmsI GCATC 2 cut(s) 277, 538
BpiI GAAGAC 1 cut(s) 609
BpmI CTGGAG 1 cut(s) 161
Bpu1102I GCTNAGC 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 447
BsaBI GATNNNNATC 1 cut(s) 244
BsaHI GRCGYC 2 cut(s) 16, 83
BsaJI CCNNGG 2 cut(s) 305, 408
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse1I ACTGG 2 cut(s) 408, 580
Bse8I GATNNNNATC 1 cut(s) 244
BseBI CCWGG 2 cut(s) 307, 409
BseDI CCNNGG 2 cut(s) 305, 408
BseGI GGATG 2 cut(s) 118, 597
BseJI GATNNNNATC 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMII CTCAG 2 cut(s) 69, 513
BseNI ACTGG 2 cut(s) 408, 580
BseXI GCAGC 2 cut(s) 148, 380
BsgI GTGCAG 1 cut(s) 155
BshFI GGCC 1 cut(s) 407
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 447
BslI CCNNNNNNNGG 1 cut(s) 446
BsnI GGCC 1 cut(s) 407
Bsp1286I GDGCHC 2 cut(s) 33, 109
Bsp143I GATC 1 cut(s) 361
Bsp1720I GCTNAGC 1 cut(s) 522
BspACI CCGC 1 cut(s) 611
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 2 cut(s) 70, 514
BspLI GGNNCC 2 cut(s) 311, 451
BspQI GCTCTTC 1 cut(s) 97
BsrI ACTGG 2 cut(s) 408, 580
BssECI CCNNGG 2 cut(s) 305, 408
BssMI GATC 1 cut(s) 361
BssNI GRCGYC 2 cut(s) 16, 83
Bst2UI CCWGG 2 cut(s) 307, 409
Bst4CI ACNGT 2 cut(s) 224, 584
Bst6I CTCTTC 2 cut(s) 97, 229
BstACI GRCGYC 2 cut(s) 16, 83
BstDEI CTNAG 2 cut(s) 78, 522
BstF5I GGATG 2 cut(s) 118, 597
BstKTI GATC 1 cut(s) 364
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 2 cut(s) 307, 409
BstSCI CCNGG 3 cut(s) 305, 407, 445
BstV1I GCAGC 2 cut(s) 148, 380
BstV2I GAAGAC 1 cut(s) 609
BsuRI GGCC 1 cut(s) 407
BtsCI GGATG 2 cut(s) 118, 597
BtsIMutI CAGTG 1 cut(s) 401
Cfr13I GGNCC 1 cut(s) 147
CseI GACGC 2 cut(s) 5, 72
Csp6I GTAC 2 cut(s) 64, 585
CspCI CAANNNNNGTGG 2 cut(s) 442, 477
CviAII CATG 2 cut(s) 110, 621
CviQI GTAC 2 cut(s) 64, 585
DdeI CTNAG 2 cut(s) 78, 522
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
Eam1104I CTCTTC 2 cut(s) 97, 229
EarI CTCTTC 2 cut(s) 97, 229
Ecl136II GAGCTC 1 cut(s) 31
Eco24I GRGCYC 2 cut(s) 33, 109
Eco47I GGWCC 1 cut(s) 147
Eco53kI GAGCTC 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 31
EcoRII CCWGG 2 cut(s) 305, 407
EcoT38I GRGCYC 2 cut(s) 33, 109
FaeI CATG 2 cut(s) 113, 624
FaiI YATR 8 cut(s) 13, 111, 220, 333, 443, 622, 632, 634
FatI CATG 2 cut(s) 109, 620
Fnu4HI GCNGC 2 cut(s) 137, 369
FokI GGATG 2 cut(s) 105, 604
FriOI GRGCYC 2 cut(s) 33, 109
Fsp4HI GCNGC 2 cut(s) 137, 369
FspBI CTAG 3 cut(s) 230, 326, 398
GluI GCNGC 2 cut(s) 137, 369
GsuI CTGGAG 1 cut(s) 161
HaeIII GGCC 1 cut(s) 407
HapII CCGG 1 cut(s) 447
HgaI GACGC 2 cut(s) 5, 72
Hin1I GRCGYC 2 cut(s) 16, 83
Hin1II CATG 2 cut(s) 113, 624
HinfI GANTC 2 cut(s) 240, 530
HpaII CCGG 1 cut(s) 447
HphI GGTGA 2 cut(s) 410, 572
Hpy188I TCNGA 3 cut(s) 79, 573, 601
Hpy188III TCNNGA 3 cut(s) 34, 159, 194
HpyAV CCTTC 2 cut(s) 44, 370
HpyCH4III ACNGT 2 cut(s) 224, 584
HpyCH4V TGCA 4 cut(s) 136, 218, 368, 384
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 78, 522
Hsp92I GRCGYC 2 cut(s) 16, 83
Hsp92II CATG 2 cut(s) 113, 624
Kzo9I GATC 1 cut(s) 361
LguI GCTCTTC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 2 cut(s) 148, 380
LweI GCATC 2 cut(s) 277, 538
MaeI CTAG 3 cut(s) 230, 326, 398
MaeIII GTNAC 1 cut(s) 560
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 7 cut(s) 59, 114, 185, 246, 266, 524, 609
MhlI GDGCHC 2 cut(s) 33, 109
MluCI AATT 4 cut(s) 42, 259, 298, 466
MnlI CCTC 4 cut(s) 73, 163, 230, 237
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 3 cut(s) 471, 483, 555
MspA1I CMGCKG 2 cut(s) 139, 613
MspI CCGG 1 cut(s) 447
MspR9I CCNGG 3 cut(s) 307, 409, 447
MvaI CCWGG 2 cut(s) 307, 409
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 447
NdeII GATC 1 cut(s) 361
NlaIII CATG 2 cut(s) 113, 624
NlaIV GGNNCC 2 cut(s) 311, 451
NmuCI GTSAC 1 cut(s) 560
PciSI GCTCTTC 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 2 cut(s) 240, 530
PkrI GCNGC 2 cut(s) 138, 370
Psp124BI GAGCTC 1 cut(s) 33
Psp6I CCWGG 2 cut(s) 305, 407
PspGI CCWGG 2 cut(s) 305, 407
PspN4I GGNNCC 2 cut(s) 311, 451
PspPI GGNCC 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 139
RsaI GTAC 2 cut(s) 65, 586
RsaNI GTAC 2 cut(s) 64, 585
SacI GAGCTC 1 cut(s) 33
SapI GCTCTTC 1 cut(s) 97
SaqAI TTAA 3 cut(s) 471, 483, 555
SatI GCNGC 2 cut(s) 137, 369
Sau3AI GATC 1 cut(s) 361
Sau96I GGNCC 1 cut(s) 147
ScaI AGTACT 1 cut(s) 586
ScrFI CCNGG 3 cut(s) 307, 409, 447
SduI GDGCHC 2 cut(s) 33, 109
SfaNI GCATC 2 cut(s) 277, 538
SinI GGWCC 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 4 cut(s) 42, 259, 298, 466
SsiI CCGC 1 cut(s) 611
SspI AATATT 1 cut(s) 345
SspMI CTAG 3 cut(s) 230, 326, 398
SstI GAGCTC 1 cut(s) 33
StyD4I CCNGG 3 cut(s) 305, 407, 445
TaaI ACNGT 2 cut(s) 224, 584
TaqI TCGA 2 cut(s) 267, 292
TaqII GACCGA 1 cut(s) 59
TasI AATT 4 cut(s) 42, 259, 298, 466
TatI WGTACW 2 cut(s) 63, 584
TfiI GAWTC 2 cut(s) 240, 530
Tru1I TTAA 3 cut(s) 471, 483, 555
Tru9I TTAA 3 cut(s) 471, 483, 555
TscAI CASTG 1 cut(s) 408
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 2 cut(s) 136, 368
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 6 cut(s) 17, 107, 253, 404, 608, 609
TspGWI ACGGA 1 cut(s) 532
TspRI CASTG 1 cut(s) 408
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 3 cut(s) 259, 298, 466
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 3 cut(s) 230, 326, 398
ZrmI AGTACT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.