Rh4BG163400

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000435
Physical Location & Seq
Forward (+)
29524632 .. 29554364
29733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG163400.1

Sequence Viewer

Length: 552 bp
ATGAGTGTAAATGGCATGGGCCTTTACAAATCTTGCTTTACTTGCATTGCGTCAAGTGATGAGGAAATAGTCCCATCTTTCGAATCATCACACTCGGTTTGTGTAAAGAGGGAACTTGGCATTGGCATTGTTGCATACAGTCCTCTAGGAAGAGGATTCTTATCATCGGGGGCAAATTTCATCGAAAATCTTCCCAATGATGATTCTCGAAAGAATATGCCTAGGTTCCAAGCTGAAAACCTAGAGCATAATAAAACAATATTTGAGCGAGTAAGTGATCTTGCAGCAAGGAAGGGTTGCACTCCATCTCAACTAGCTCTGGCCTGGGTTCATCACCAAGGAAATGATGTGTGCCCTATACCCGGAACCACCAAGATTGAGAATTTTAACCAGAACATTAAGGCTCTGTCTGTGAAACTGACACCAGAAGAAATGGCTGAGCTTGAATCTTTTGCTTCTGCAGATGCTGTTAAGGGCGACAGATATCAGACTGGCCTAAGTACTTGGAGGAACTCTGACACTCCACCACTGTCTTCATGGAAAGCCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

183

Amino Acids

20.06

Weight (kDa)

5.81

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 34 - 151 1.8e-21 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 175, 382
AfaI GTAC 1 cut(s) 502
AfiI CCNNNNNNNGG 1 cut(s) 362
AgsI TTSAA 1 cut(s) 446
AjnI CCWGG 1 cut(s) 323
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AluBI AGCT 3 cut(s) 233, 317, 442
AluI AGCT 3 cut(s) 233, 317, 442
AlwNI CAGNNNCTG 1 cut(s) 467
AoxI GGCC 3 cut(s) 19, 321, 493
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 2 cut(s) 175, 382
Asp700I GAANNNNTTC 1 cut(s) 189
AspA2I CCTAGG 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 19
AsuC2I CCSGG 1 cut(s) 363
AsuHPI GGTGA 1 cut(s) 326
AsuII TTCGAA 1 cut(s) 81
AvrII CCTAGG 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 525
BbvI GCAGC 1 cut(s) 296
BccI CCATC 2 cut(s) 82, 313
BciT130I CCWGG 1 cut(s) 325
BcnI CCSGG 1 cut(s) 363
BfaI CTAG 4 cut(s) 146, 222, 242, 314
BfmI CTRYAG 1 cut(s) 459
BisI GCNGC 1 cut(s) 285
BlnI CCTAGG 1 cut(s) 221
BlpI GCTNAGC 1 cut(s) 438
BlsI GCNGC 1 cut(s) 286
BmcAI AGTACT 1 cut(s) 502
Bme1390I CCNGG 2 cut(s) 325, 363
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 2 cut(s) 227, 367
BmrFI CCNGG 2 cut(s) 325, 363
BmsI GCATC 1 cut(s) 454
BpiI GAAGAC 1 cut(s) 525
Bpu1102I GCTNAGC 1 cut(s) 438
Bpu14I TTCGAA 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 160
BsaJI CCNNGG 3 cut(s) 221, 324, 337
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 496
Bse3DI GCAATG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 160
BseBI CCWGG 1 cut(s) 325
BseDI CCNNGG 3 cut(s) 221, 324, 337
BseJI GATNNNNATC 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 1 cut(s) 496
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 1 cut(s) 296
BshFI GGCC 3 cut(s) 21, 323, 495
BsiSI CCGG 1 cut(s) 363
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 3 cut(s) 21, 323, 495
Bsp119I TTCGAA 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 356
Bsp143I GATC 1 cut(s) 277
Bsp1720I GCTNAGC 1 cut(s) 438
BspANI GGCC 3 cut(s) 21, 323, 495
BspCNI CTCAG 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 227, 367
BspMAI CTGCAG 1 cut(s) 463
BspT104I TTCGAA 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 1 cut(s) 496
BssECI CCNNGG 3 cut(s) 221, 324, 337
BssMI GATC 1 cut(s) 277
BssT1I CCWWGG 2 cut(s) 221, 337
Bst2UI CCWGG 1 cut(s) 325
Bst4CI ACNGT 2 cut(s) 140, 531
Bst6I CTCTTC 1 cut(s) 145
BstBI TTCGAA 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 438, 497
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNI CCWGG 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 323, 361
BstSFI CTRYAG 1 cut(s) 459
BstSLI GKGCMC 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 296
BstV2I GAAGAC 1 cut(s) 525
BsuRI GGCC 3 cut(s) 21, 323, 495
BtsIMutI CAGTG 1 cut(s) 527
CaiI CAGNNNCTG 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 19
CseI GACGC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 501
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviAII CATG 2 cut(s) 16, 537
CviJI RGCY 9 cut(s) 21, 233, 317, 323, 404, 437, 442, 495, 545
CviKI_1 RGCY 9 cut(s) 21, 233, 317, 323, 404, 437, 442, 495, 545
CviQI GTAC 1 cut(s) 501
DdeI CTNAG 2 cut(s) 438, 497
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Eco130I CCWWGG 2 cut(s) 221, 337
Eco32I GATATC 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 323
EcoRV GATATC 1 cut(s) 485
EcoT14I CCWWGG 2 cut(s) 221, 337
ErhI CCWWGG 2 cut(s) 221, 337
FaeI CATG 2 cut(s) 19, 540
FaiI YATR 7 cut(s) 17, 136, 218, 249, 359, 538, 550
FaqI GGGAC 1 cut(s) 56
FatI CATG 2 cut(s) 15, 536
Fnu4HI GCNGC 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 4 cut(s) 146, 222, 242, 314
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 3 cut(s) 21, 323, 495
HapII CCGG 1 cut(s) 363
HgaI GACGC 1 cut(s) 39
Hin1II CATG 2 cut(s) 19, 540
HinfI GANTC 4 cut(s) 83, 156, 203, 446
HpaII CCGG 1 cut(s) 363
HphI GGTGA 1 cut(s) 326
Hpy188I TCNGA 2 cut(s) 489, 517
Hpy188III TCNNGA 1 cut(s) 207
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 2 cut(s) 140, 531
HpyCH4V TGCA 5 cut(s) 45, 134, 284, 300, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 2 cut(s) 438, 497
Hsp92II CATG 2 cut(s) 19, 540
Kzo9I GATC 1 cut(s) 277
LpnPI CCDG 7 cut(s) 305, 310, 337, 376, 404, 438, 477
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 1 cut(s) 454
MaeI CTAG 4 cut(s) 146, 222, 242, 314
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 4 cut(s) 162, 182, 440, 525
MhlI GDGCHC 1 cut(s) 356
MluCI AATT 2 cut(s) 175, 382
MnlI CCTC 5 cut(s) 55, 102, 146, 153, 501
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 3 cut(s) 387, 399, 471
MspI CCGG 1 cut(s) 363
MspR9I CCNGG 2 cut(s) 325, 363
MvaI CCWGG 1 cut(s) 325
MwoI GCNNNNNNNGC 1 cut(s) 42
NciI CCSGG 1 cut(s) 363
NdeII GATC 1 cut(s) 277
NlaIII CATG 2 cut(s) 19, 540
NlaIV GGNNCC 2 cut(s) 227, 367
NspV TTCGAA 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 4 cut(s) 83, 156, 203, 446
PkrI GCNGC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 323
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 2 cut(s) 227, 367
PspPI GGNCC 1 cut(s) 19
PstI CTGCAG 1 cut(s) 463
PstNI CAGNNNCTG 1 cut(s) 467
RsaI GTAC 1 cut(s) 502
RsaNI GTAC 1 cut(s) 501
SaqAI TTAA 3 cut(s) 387, 399, 471
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 19
ScaI AGTACT 1 cut(s) 502
ScrFI CCNGG 2 cut(s) 325, 363
SduI GDGCHC 1 cut(s) 356
SetI ASST 5 cut(s) 227, 235, 243, 319, 444
SfaNI GCATC 1 cut(s) 454
SfcI CTRYAG 1 cut(s) 459
SfuI TTCGAA 1 cut(s) 81
Sse9I AATT 2 cut(s) 175, 382
SspI AATATT 1 cut(s) 261
SspMI CTAG 4 cut(s) 146, 222, 242, 314
StyD4I CCNGG 2 cut(s) 323, 361
StyI CCWWGG 2 cut(s) 221, 337
TaaI ACNGT 2 cut(s) 140, 531
TaqI TCGA 3 cut(s) 81, 183, 208
TasI AATT 2 cut(s) 175, 382
TatI WGTACW 1 cut(s) 500
TfiI GAWTC 4 cut(s) 83, 156, 203, 446
Tru1I TTAA 3 cut(s) 387, 399, 471
Tru9I TTAA 3 cut(s) 387, 399, 471
TscAI CASTG 1 cut(s) 534
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 3 cut(s) 169, 320, 525
TspRI CASTG 1 cut(s) 534
XapI RAATTY 2 cut(s) 175, 382
XcmI CCANNNNNNNNNTGG 1 cut(s) 534
XmaJI CCTAGG 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 4 cut(s) 146, 222, 242, 314
ZrmI AGTACT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.