Rorug07G0180500

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000188
Physical Location & Seq
Reverse (-)
15109069 .. 15113684
4616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0180500.1

Sequence Viewer

Length: 603 bp
ATGAACGCCGGCGAACAACCCATACCCTCTTCCTTAGCAATGGCGAACCCGGAGCAATCTGAGTCCGAGGTGCTTTTCATCACCGTATACTCCAACTTGAACACCGGCCAACGACCTACCCGACCGTGGGGTCTCCCAGCGGCCGACTCTGAGCGTGGGCTTAACCCCAATGCCAGACCTCTTAACTACTACAAGAATCAGATATACGTCCGAGGACTACCATACTCGATGACTGATGCACAACTCGAAGCAATCTTCCGCGCTAGATTTGGTGCAGGTGTAGTGAACGTGAAAGTTTGGCTCAATAAGTACGGGATCACTATACAGTGTGGCCATGTCACTTTTGGATCGCGTAGCTTGGTGGAAGAGGCGGTGGCGCTGGGCGACTGGCAAGGGATCAGAATCGAAAGGCATAGACCTCAGTTCCCGAAAACACTGTTACGAGCATTGCGAGTGAGTTCTGAGGATCCCAATTCGCAGCTTTATGTGGCCCAAGCGAAGACTGAGCTGGACAGTTGGAGAAAGATTTATGTCGAGTGGCAGCAAAGCATGCTGGCAGAGAGGCTCCGCTTGACCCTATCGACTTCTTACTCCTTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

200

Amino Acids

22.68

Weight (kDa)

9.26

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 266
AasI GACNNNNNNGTC 1 cut(s) 129
Acc36I ACCTGC 1 cut(s) 266
AccI GTMKAC 1 cut(s) 87
AccII CGCG 2 cut(s) 261, 352
AciI CCGC 4 cut(s) 140, 259, 371, 568
AclWI GGATC 5 cut(s) 323, 355, 404, 461, 474
AcoI YGGCCR 3 cut(s) 106, 141, 331
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 2 cut(s) 126, 127
AgsI TTSAA 1 cut(s) 100
AluBI AGCT 3 cut(s) 357, 481, 508
AluI AGCT 3 cut(s) 357, 481, 508
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 5 cut(s) 323, 355, 404, 461, 474
AoxI GGCC 4 cut(s) 106, 141, 331, 489
ApeKI GCWGC 2 cut(s) 478, 541
AspLEI GCGC 2 cut(s) 263, 379
AspS9I GGNCC 1 cut(s) 490
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 73
BalI TGGCCA 1 cut(s) 333
BamHI GGATCC 1 cut(s) 466
BbsI GAAGAC 1 cut(s) 506
BbvI GCAGC 2 cut(s) 490, 553
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 2 cut(s) 264, 601
BfoI RGCGCY 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 266
BisI GCNGC 3 cut(s) 141, 479, 542
BlsI GCNGC 3 cut(s) 142, 480, 543
Bme1390I CCNGG 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 490
BmiI GGNNCC 2 cut(s) 468, 566
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 506
Bpu10I CCTNAGC 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 50
BsaBI GATNNNNATC 1 cut(s) 401
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 3 cut(s) 66, 125, 211
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 127
Bse118I RCCGGY 2 cut(s) 8, 104
Bse1I ACTGG 1 cut(s) 392
Bse3DI GCAATG 2 cut(s) 45, 446
Bse8I GATNNNNATC 1 cut(s) 401
BseDI CCNNGG 3 cut(s) 66, 125, 211
BseJI GATNNNNATC 1 cut(s) 401
BseLI CCNNNNNNNGG 2 cut(s) 126, 127
BseMI GCAATG 2 cut(s) 45, 446
BseMII CTCAG 5 cut(s) 51, 141, 434, 453, 495
BseNI ACTGG 1 cut(s) 392
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 490, 553
BseYI CCCAGC 2 cut(s) 136, 379
BsgI GTGCAG 1 cut(s) 294
Bsh1236I CGCG 2 cut(s) 261, 352
Bsh1285I CGRYCG 2 cut(s) 125, 144
BshFI GGCC 4 cut(s) 108, 143, 333, 491
BsiEI CGRYCG 2 cut(s) 125, 144
BsiSI CCGG 3 cut(s) 9, 50, 105
BslI CCNNNNNNNGG 2 cut(s) 126, 127
BsmAI GTCTC 1 cut(s) 137
BsnI GGCC 4 cut(s) 108, 143, 333, 491
Bso31I GGTCTC 1 cut(s) 137
Bsp143I GATC 4 cut(s) 315, 347, 396, 466
BspACI CCGC 4 cut(s) 140, 259, 371, 568
BspANI GGCC 4 cut(s) 108, 143, 333, 491
BspCNI CTCAG 5 cut(s) 52, 142, 433, 454, 496
BspFNI CGCG 2 cut(s) 261, 352
BspLI GGNNCC 2 cut(s) 468, 566
BspMI ACCTGC 1 cut(s) 266
BspPI GGATC 5 cut(s) 323, 355, 404, 461, 474
BspTNI GGTCTC 1 cut(s) 137
BsrDI GCAATG 2 cut(s) 45, 446
BsrFI RCCGGY 2 cut(s) 8, 104
BsrI ACTGG 1 cut(s) 392
BssAI RCCGGY 2 cut(s) 8, 104
BssECI CCNNGG 3 cut(s) 66, 125, 211
BssMI GATC 4 cut(s) 315, 347, 396, 466
BssNAI GTATAC 1 cut(s) 88
Bst1107I GTATAC 1 cut(s) 88
Bst4CI ACNGT 5 cut(s) 85, 126, 327, 438, 515
Bst6I CTCTTC 2 cut(s) 34, 360
BstAPI GCANNNNNTGC 1 cut(s) 550
BstC8I GCNNGC 3 cut(s) 10, 551, 555
BstDEI CTNAG 6 cut(s) 34, 60, 150, 420, 462, 504
BstDSI CCRYGG 1 cut(s) 125
BstFNI CGCG 2 cut(s) 261, 352
BstH2I RGCGCY 1 cut(s) 380
BstHHI GCGC 2 cut(s) 263, 379
BstKTI GATC 4 cut(s) 318, 350, 399, 469
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 4 cut(s) 315, 347, 396, 466
BstMCI CGRYCG 2 cut(s) 125, 144
BstMWI GCNNNNNNNGC 1 cut(s) 550
BstNSI RCATGY 1 cut(s) 553
BstSCI CCNGG 1 cut(s) 48
BstUI CGCG 2 cut(s) 261, 352
BstV1I GCAGC 2 cut(s) 490, 553
BstV2I GAAGAC 1 cut(s) 506
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BstZ17I GTATAC 1 cut(s) 88
BstZI CGGCCG 1 cut(s) 141
BsuRI GGCC 4 cut(s) 108, 143, 333, 491
BtgI CCRYGG 1 cut(s) 125
BtsIMutI CAGTG 2 cut(s) 332, 434
BveI ACCTGC 1 cut(s) 266
Cac8I GCNNGC 3 cut(s) 10, 551, 555
CfoI GCGC 2 cut(s) 263, 379
Cfr10I RCCGGY 2 cut(s) 8, 104
Cfr13I GGNCC 1 cut(s) 490
Csp6I GTAC 1 cut(s) 310
CviAII CATG 2 cut(s) 335, 550
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 6 cut(s) 34, 60, 150, 420, 462, 504
DpnI GATC 4 cut(s) 317, 349, 398, 468
DpnII GATC 4 cut(s) 315, 347, 396, 466
DrdI GACNNNNNNGTC 1 cut(s) 129
DseDI GACNNNNNNGTC 1 cut(s) 129
EaeI YGGCCR 3 cut(s) 106, 141, 331
EagI CGGCCG 1 cut(s) 141
Eam1104I CTCTTC 2 cut(s) 34, 360
EarI CTCTTC 2 cut(s) 34, 360
EclXI CGGCCG 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 137
Eco52I CGGCCG 1 cut(s) 141
FaeI CATG 2 cut(s) 338, 553
FatI CATG 2 cut(s) 334, 549
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 3 cut(s) 141, 479, 542
Fsp4HI GCNGC 3 cut(s) 141, 479, 542
FspBI CTAG 2 cut(s) 264, 601
GlaI GCGC 2 cut(s) 262, 378
GluI GCNGC 3 cut(s) 141, 479, 542
GsaI CCCAGC 2 cut(s) 140, 383
HaeII RGCGCY 1 cut(s) 380
HaeIII GGCC 4 cut(s) 108, 143, 333, 491
HapII CCGG 3 cut(s) 9, 50, 105
HhaI GCGC 2 cut(s) 263, 379
Hin1II CATG 2 cut(s) 338, 553
Hin6I GCGC 2 cut(s) 261, 377
HinP1I GCGC 2 cut(s) 261, 377
HinfI GANTC 4 cut(s) 62, 146, 196, 402
HpaII CCGG 3 cut(s) 9, 50, 105
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 2 cut(s) 88, 286
Hpy188I TCNGA 7 cut(s) 61, 67, 151, 201, 212, 401, 463
Hpy188III TCNNGA 1 cut(s) 427
Hpy8I GTNNAC 2 cut(s) 88, 286
HpyCH4III ACNGT 5 cut(s) 85, 126, 327, 438, 515
HpyCH4IV ACGT 2 cut(s) 207, 288
HpyCH4V TGCA 2 cut(s) 239, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 550
HpyF3I CTNAG 6 cut(s) 34, 60, 150, 420, 462, 504
HpySE526I ACGT 2 cut(s) 207, 288
Hsp92II CATG 2 cut(s) 338, 553
HspAI GCGC 2 cut(s) 261, 377
KroI GCCGGC 1 cut(s) 8
KroNI GCCGGC 1 cut(s) 10
Kzo9I GATC 4 cut(s) 315, 347, 396, 466
LmnI GCTCC 2 cut(s) 52, 570
Lsp1109I GCAGC 2 cut(s) 490, 553
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 264, 601
MaeII ACGT 2 cut(s) 207, 288
MaeIII GTNAC 2 cut(s) 337, 438
MalI GATC 4 cut(s) 317, 349, 398, 468
MboI GATC 4 cut(s) 315, 347, 396, 466
MboII GAAGA 4 cut(s) 21, 247, 377, 511
MflI RGATCY 1 cut(s) 466
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 1 cut(s) 472
MluNI TGGCCA 1 cut(s) 333
MlyI GAGTC 2 cut(s) 71, 140
MmeI TCCRAC 2 cut(s) 117, 497
MnlI CCTC 8 cut(s) 37, 61, 189, 206, 361, 429, 457, 555
Mox20I TGGCCA 1 cut(s) 333
MreI CGCCGGCG 1 cut(s) 8
MroNI GCCGGC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 333
MseI TTAA 2 cut(s) 162, 183
Msp20I TGGCCA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 3 cut(s) 9, 50, 105
MspR9I CCNGG 1 cut(s) 50
MvnI CGCG 2 cut(s) 261, 352
MwoI GCNNNNNNNGC 1 cut(s) 550
NaeI GCCGGC 1 cut(s) 10
NciI CCSGG 1 cut(s) 50
NdeII GATC 4 cut(s) 315, 347, 396, 466
NgoMIV GCCGGC 1 cut(s) 8
NlaIII CATG 2 cut(s) 338, 553
NlaIV GGNNCC 2 cut(s) 468, 566
NmuCI GTSAC 1 cut(s) 337
NspI RCATGY 1 cut(s) 553
PaeI GCATGC 1 cut(s) 553
PaqCI CACCTGC 1 cut(s) 266
PcsI WCGNNNNNNNCGW 2 cut(s) 118, 448
PdiI GCCGGC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 196, 402
PkrI GCNGC 3 cut(s) 142, 480, 543
PleI GAGTC 2 cut(s) 70, 140
PpsI GAGTC 2 cut(s) 70, 140
PspFI CCCAGC 2 cut(s) 136, 379
PspN4I GGNNCC 2 cut(s) 468, 566
PspPI GGNCC 1 cut(s) 490
PsrI GAACNNNNNNTAC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SaqAI TTAA 2 cut(s) 162, 183
SatI GCNGC 3 cut(s) 141, 479, 542
Sau3AI GATC 4 cut(s) 315, 347, 396, 466
Sau96I GGNCC 1 cut(s) 490
SchI GAGTC 2 cut(s) 71, 140
ScrFI CCNGG 1 cut(s) 50
SfaNI GCATC 1 cut(s) 226
SgrAI CRCCGGYG 1 cut(s) 8
SphI GCATGC 1 cut(s) 553
Sse9I AATT 1 cut(s) 472
SsiI CCGC 4 cut(s) 140, 259, 371, 568
SspMI CTAG 2 cut(s) 264, 601
StyD4I CCNGG 1 cut(s) 48
TaaI ACNGT 5 cut(s) 85, 126, 327, 438, 515
TaiI ACGT 2 cut(s) 210, 291
TaqI TCGA 5 cut(s) 227, 246, 405, 534, 581
TasI AATT 1 cut(s) 472
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 2 cut(s) 196, 402
Tru1I TTAA 2 cut(s) 162, 183
Tru9I TTAA 2 cut(s) 162, 183
TscAI CASTG 2 cut(s) 332, 441
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 2 cut(s) 478, 541
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 2 cut(s) 17, 67
TspRI CASTG 2 cut(s) 332, 441
XceI RCATGY 1 cut(s) 553
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 2 cut(s) 264, 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.