pycom111g01170

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0000188
Physical Location & Seq
Reverse (-)
752460 .. 753408
949 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g01170.1

Sequence Viewer

Length: 795 bp
ATGGAAAGTAAGAGACAAATTAACGAAGTTGATGATAGTCTTTCAGTTCTTATAGATGATGGTATTGTAGATGAATTGAGAAACAGCATCGAACGAAGACTTCTCAGTGAAACACCAATGCCAGCAACCCGCTGCATCTTCAAGGTTCCCGATAAGATTCGGCTCAAAAAACCACAAGCATACGAACCTGACATCGTCTCAATCGGACCCTATCACAGTGGCCCCAATGGCAATTCTGGCAATAAATTCCGACTCATGGAAAATGTGAAGCACTGGTACTTGCACTGCCTTCTCTCACGCGTTAACATAACTTTGGCAGGCTTGATCATAGGTGTCATGGATTTAGACAAGCGCGCTCGCGACTATTACGCAGAGCCATTGGATCATCTCAAGAAGAAAGACTTCCTCGACATGATGGTACTCGACGGATGCTTCCTAATCGAACTATTTCGAAAAGGAACCCATCACTACGACATTAACGACCCCGTTTACAGTGTGTCCTGCACTATGGATTATCTTTACCATGACCTTATCCTGCTAGAAAATCAGCTGCCATGGTTTGTTCTCGAGCGGTTATACAATTTAACTGCCGTGGAGAATACTACTCGCCAAGGAAATAGAACTGCCGCAGACGATTCCAAACGTGACAACTCTGTCCAAAGCCGGCATTCAATTCCAAAAGGGCTCCAGTGGCTGCATACTGGACATAAATTTCAAAAACGGGGTGTTCACTATTCCACCACTACCATTCGACGAGATTACAGAGCCGCTCTTCAGGAATCTCATCGCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

265

Amino Acids

30.71

Weight (kDa)

8.26

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 46 - 204 1.5e-45 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 653
AccBSI CCGCTC 2 cut(s) 571, 770
AccII CGCG 3 cut(s) 300, 354, 360
AciI CCGC 4 cut(s) 130, 571, 627, 768
AclWI GGATC 1 cut(s) 390
AcsI RAATTY 2 cut(s) 245, 710
AcuI CTGAAG 1 cut(s) 758
AfaI GTAC 2 cut(s) 278, 420
AfiI CCNNNNNNNGG 1 cut(s) 256
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 3 cut(s) 142, 672, 716
AluBI AGCT 1 cut(s) 550
AluI AGCT 1 cut(s) 550
Alw26I GTCTC 2 cut(s) 7, 202
AlwI GGATC 1 cut(s) 390
AlwNI CAGNNNCTG 1 cut(s) 694
Ama87I CYCGRG 1 cut(s) 566
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 3 cut(s) 132, 550, 694
ApoI RAATTY 2 cut(s) 245, 710
Asp700I GAANNNNTTC 2 cut(s) 401, 447
AspLEI GCGC 2 cut(s) 354, 356
AspS9I GGNCC 2 cut(s) 206, 221
AsuII TTCGAA 1 cut(s) 451
AvaI CYCGRG 1 cut(s) 566
AvaII GGWCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 687
BarI GAAGNNNNNNTAC 2 cut(s) 260, 292
BbsI GAAGAC 1 cut(s) 103
BbvI GCAGC 3 cut(s) 119, 537, 681
BccI CCATC 3 cut(s) 53, 409, 471
BceAI ACGGC 1 cut(s) 575
BclI TGATCA 1 cut(s) 324
BcoDI GTCTC 2 cut(s) 7, 202
BfaI CTAG 1 cut(s) 539
BglI GCCNNNNNGGC 1 cut(s) 228
BisI GCNGC 5 cut(s) 133, 551, 627, 695, 768
BlsI GCNGC 5 cut(s) 134, 552, 628, 696, 769
Bme18I GGWCC 1 cut(s) 206
BmeT110I CYCGRG 1 cut(s) 566
BmgT120I GGNCC 2 cut(s) 206, 221
BmiI GGNNCC 5 cut(s) 147, 208, 223, 460, 686
BmsI GCATC 3 cut(s) 96, 144, 419
BpiI GAAGAC 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 671
Bpu14I TTCGAA 1 cut(s) 451
BpuEI CTTGAG 1 cut(s) 374
BsaJI CCNNGG 3 cut(s) 554, 591, 610
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse118I RCCGGY 1 cut(s) 663
Bse1I ACTGG 3 cut(s) 278, 688, 706
BseDI CCNNGG 3 cut(s) 554, 591, 610
BseGI GGATG 1 cut(s) 434
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 118
BseNI ACTGG 3 cut(s) 278, 688, 706
BsePI GCGCGC 1 cut(s) 352
BseXI GCAGC 3 cut(s) 119, 537, 681
BsgI GTGCAG 1 cut(s) 487
Bsh1236I CGCG 3 cut(s) 300, 354, 360
BshFI GGCC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 566
BsiSI CCGG 1 cut(s) 664
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 2 cut(s) 7, 202
BsmBI CGTCTC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 667
BsnI GGCC 1 cut(s) 222
BsoBI CYCGRG 1 cut(s) 566
Bsp119I TTCGAA 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 687
Bsp143I GATC 2 cut(s) 324, 382
Bsp19I CCATGG 1 cut(s) 554
Bsp68I TCGCGA 1 cut(s) 360
BspACI CCGC 4 cut(s) 130, 571, 627, 768
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 117
BspFNI CGCG 3 cut(s) 300, 354, 360
BspLI GGNNCC 5 cut(s) 147, 208, 223, 460, 686
BspPI GGATC 1 cut(s) 390
BspQI GCTCTTC 1 cut(s) 777
BspT104I TTCGAA 1 cut(s) 451
BsrBI CCGCTC 2 cut(s) 571, 770
BsrFI RCCGGY 1 cut(s) 663
BsrI ACTGG 3 cut(s) 278, 688, 706
BssAI RCCGGY 1 cut(s) 663
BssECI CCNNGG 3 cut(s) 554, 591, 610
BssHII GCGCGC 1 cut(s) 352
BssMI GATC 2 cut(s) 324, 382
BssT1I CCWWGG 2 cut(s) 554, 610
Bst4CI ACNGT 2 cut(s) 218, 494
Bst6I CTCTTC 1 cut(s) 777
BstBI TTCGAA 1 cut(s) 451
BstC8I GCNNGC 5 cut(s) 123, 319, 354, 358, 665
BstDEI CTNAG 1 cut(s) 104
BstDSI CCRYGG 2 cut(s) 554, 591
BstF5I GGATG 1 cut(s) 434
BstFNI CGCG 3 cut(s) 300, 354, 360
BstHHI GCGC 2 cut(s) 354, 356
BstKTI GATC 2 cut(s) 327, 385
BstMAI GTCTC 2 cut(s) 7, 202
BstMBI GATC 2 cut(s) 324, 382
BstMWI GCNNNNNNNGC 3 cut(s) 228, 237, 691
BstUI CGCG 3 cut(s) 300, 354, 360
BstV1I GCAGC 3 cut(s) 119, 537, 681
BstV2I GAAGAC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 222
BtgI CCRYGG 2 cut(s) 554, 591
BtgZI GCGATG 1 cut(s) 770
BtsCI GGATG 1 cut(s) 434
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 6 cut(s) 112, 223, 271, 283, 499, 695
BtuMI TCGCGA 1 cut(s) 360
Cac8I GCNNGC 5 cut(s) 123, 319, 354, 358, 665
CaiI CAGNNNCTG 1 cut(s) 694
CfoI GCGC 2 cut(s) 354, 356
Cfr10I RCCGGY 1 cut(s) 663
Cfr13I GGNCC 2 cut(s) 206, 221
Csp6I GTAC 2 cut(s) 277, 419
CviAII CATG 5 cut(s) 256, 337, 412, 524, 555
CviJI RGCY 9 cut(s) 163, 222, 321, 376, 550, 663, 685, 694, 767
CviKI_1 RGCY 9 cut(s) 163, 222, 321, 376, 550, 663, 685, 694, 767
CviQI GTAC 2 cut(s) 277, 419
DdeI CTNAG 1 cut(s) 104
DpnI GATC 2 cut(s) 326, 384
DpnII GATC 2 cut(s) 324, 382
DrdI GACNNNNNNGTC 1 cut(s) 653
DseDI GACNNNNNNGTC 1 cut(s) 653
Eam1104I CTCTTC 1 cut(s) 777
EarI CTCTTC 1 cut(s) 777
Eco130I CCWWGG 2 cut(s) 554, 610
Eco24I GRGCYC 1 cut(s) 687
Eco47I GGWCC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 758
Eco88I CYCGRG 1 cut(s) 566
EcoT14I CCWWGG 2 cut(s) 554, 610
EcoT38I GRGCYC 1 cut(s) 687
ErhI CCWWGG 2 cut(s) 554, 610
Esp3I CGTCTC 1 cut(s) 202
FaeI CATG 5 cut(s) 259, 340, 415, 527, 558
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FatI CATG 5 cut(s) 255, 336, 411, 523, 554
FauI CCCGC 1 cut(s) 137
FbaI TGATCA 1 cut(s) 324
Fnu4HI GCNGC 5 cut(s) 133, 551, 627, 695, 768
FokI GGATG 1 cut(s) 441
FriOI GRGCYC 1 cut(s) 687
Fsp4HI GCNGC 5 cut(s) 133, 551, 627, 695, 768
FspBI CTAG 1 cut(s) 539
GlaI GCGC 2 cut(s) 353, 355
GluI GCNGC 5 cut(s) 133, 551, 627, 695, 768
GsuI CTGGAG 1 cut(s) 671
HaeIII GGCC 1 cut(s) 222
HapII CCGG 1 cut(s) 664
HhaI GCGC 2 cut(s) 354, 356
Hin1II CATG 5 cut(s) 259, 340, 415, 527, 558
Hin6I GCGC 2 cut(s) 352, 354
HinP1I GCGC 2 cut(s) 352, 354
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 4 cut(s) 157, 252, 635, 779
HpaI GTTAAC 1 cut(s) 304
HpaII CCGG 1 cut(s) 664
Hpy166II GTNNAC 3 cut(s) 304, 490, 730
Hpy188I TCNGA 2 cut(s) 206, 251
Hpy188III TCNNGA 5 cut(s) 149, 359, 391, 566, 776
Hpy8I GTNNAC 3 cut(s) 304, 490, 730
Hpy99I CGWCG 2 cut(s) 428, 756
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 2 cut(s) 218, 494
HpyCH4IV ACGT 1 cut(s) 643
HpyCH4V TGCA 4 cut(s) 135, 283, 504, 697
HpyF10VI GCNNNNNNNGC 3 cut(s) 228, 237, 691
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 643
Hsp92II CATG 5 cut(s) 259, 340, 415, 527, 558
HspAI GCGC 2 cut(s) 352, 354
KroI GCCGGC 1 cut(s) 663
KroNI GCCGGC 1 cut(s) 665
Ksp22I TGATCA 1 cut(s) 324
KspAI GTTAAC 1 cut(s) 304
Kzo9I GATC 2 cut(s) 324, 382
LguI GCTCTTC 1 cut(s) 777
LmnI GCTCC 1 cut(s) 690
Lsp1109I GCAGC 3 cut(s) 119, 537, 681
LweI GCATC 3 cut(s) 96, 144, 419
MaeI CTAG 1 cut(s) 539
MaeII ACGT 1 cut(s) 643
MaeIII GTNAC 1 cut(s) 644
MalI GATC 2 cut(s) 326, 384
MbiI CCGCTC 2 cut(s) 571, 770
MboI GATC 2 cut(s) 324, 382
MboII GAAGA 4 cut(s) 108, 130, 406, 764
MhlI GDGCHC 1 cut(s) 687
MluCI AATT 7 cut(s) 18, 74, 232, 245, 580, 672, 710
MluI ACGCGT 1 cut(s) 298
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 1 cut(s) 416
MroNI GCCGGC 1 cut(s) 663
MroXI GAANNNNTTC 2 cut(s) 401, 447
MseI TTAA 5 cut(s) 21, 303, 477, 584, 793
MspA1I CMGCKG 2 cut(s) 132, 550
MspI CCGG 1 cut(s) 664
Mva1269I GAATGC 1 cut(s) 667
MvnI CGCG 3 cut(s) 300, 354, 360
MwoI GCNNNNNNNGC 3 cut(s) 228, 237, 691
NaeI GCCGGC 1 cut(s) 665
NcoI CCATGG 1 cut(s) 554
NdeII GATC 2 cut(s) 324, 382
NgoMIV GCCGGC 1 cut(s) 663
NlaIII CATG 5 cut(s) 259, 340, 415, 527, 558
NlaIV GGNNCC 5 cut(s) 147, 208, 223, 460, 686
NmuCI GTSAC 1 cut(s) 644
NruI TCGCGA 1 cut(s) 360
NspV TTCGAA 1 cut(s) 451
PaeR7I CTCGAG 1 cut(s) 566
PauI GCGCGC 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 777
PcsI WCGNNNNNNNCGW 1 cut(s) 477
PctI GAATGC 1 cut(s) 667
PdiI GCCGGC 1 cut(s) 665
PdmI GAANNNNTTC 2 cut(s) 401, 447
PfeI GAWTC 3 cut(s) 157, 635, 779
PflFI GACNNNGTC 1 cut(s) 194
PkrI GCNGC 5 cut(s) 134, 552, 628, 696, 769
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
PspN4I GGNNCC 5 cut(s) 147, 208, 223, 460, 686
PspPI GGNCC 2 cut(s) 206, 221
PstNI CAGNNNCTG 1 cut(s) 694
PsyI GACNNNGTC 1 cut(s) 194
PteI GCGCGC 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 550
RruI TCGCGA 1 cut(s) 360
RsaI GTAC 2 cut(s) 278, 420
RsaNI GTAC 2 cut(s) 277, 419
SapI GCTCTTC 1 cut(s) 777
SaqAI TTAA 5 cut(s) 21, 303, 477, 584, 793
SatI GCNGC 5 cut(s) 133, 551, 627, 695, 768
Sau3AI GATC 2 cut(s) 324, 382
Sau96I GGNCC 2 cut(s) 206, 221
SchI GAGTC 1 cut(s) 246
SduI GDGCHC 1 cut(s) 687
SetI ASST 6 cut(s) 147, 190, 334, 531, 552, 646
SfaNI GCATC 3 cut(s) 96, 144, 419
Sfr274I CTCGAG 1 cut(s) 566
SfuI TTCGAA 1 cut(s) 451
SinI GGWCC 1 cut(s) 206
SlaI CTCGAG 1 cut(s) 566
SmlI CTYRAG 2 cut(s) 389, 566
SmoI CTYRAG 2 cut(s) 389, 566
Sse9I AATT 7 cut(s) 18, 74, 232, 245, 580, 672, 710
SsiI CCGC 4 cut(s) 130, 571, 627, 768
SspMI CTAG 1 cut(s) 539
StyI CCWWGG 2 cut(s) 554, 610
TaaI ACNGT 2 cut(s) 218, 494
TaiI ACGT 1 cut(s) 646
TaqI TCGA 7 cut(s) 90, 408, 423, 441, 451, 567, 751
TasI AATT 7 cut(s) 18, 74, 232, 245, 580, 672, 710
TauI GCSGC 2 cut(s) 629, 770
TfiI GAWTC 3 cut(s) 157, 635, 779
Tru1I TTAA 5 cut(s) 21, 303, 477, 584, 793
Tru9I TTAA 5 cut(s) 21, 303, 477, 584, 793
TscAI CASTG 6 cut(s) 112, 223, 278, 290, 499, 695
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 3 cut(s) 132, 550, 694
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 1 cut(s) 87
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 6 cut(s) 112, 223, 278, 290, 499, 695
Tth111I GACNNNGTC 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 2 cut(s) 245, 710
XhoI CTCGAG 1 cut(s) 566
XmnI GAANNNNTTC 2 cut(s) 401, 447
XspI CTAG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.