Rmu_sc0006027.1_g000005

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006027.1
OG0000188
Physical Location & Seq
Forward (+)
12228 .. 15162
2935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006027.1_g000005.1.cds

Sequence Viewer

Length: 1809 bp
atggaaatttggagtgaatcgagtgatatagaaaatggtcaagtggatgaagatgaacaatggaaaagaaccttcgatataaagcttttgaatgccaaatcacctttgccttctacatgttgcatcttcaaagttcccgaggtgctacgacgacaaaacaaacaagcatacgaacctgatatagtctcaatcggaccctttcaccgaggtgctggtgaaaaaattaaacttgtgggaaatgtgaaagaatggtatttaaagtgccttctctcgcgtacgaagacaataaccttggatagcttgattgaaagcatcaagggactgggactggaaaaacaagcccgaggttgttatgaaccatgctttcatcttgaccaaaaccacttcatagagatgctcatactcgatggttgtttcttgatagaattatttcagaaggcacattctaaagacaaacaagatagtgacgaccctatttttcacgtgtcttgtatgctggaatacctataccatgatcttctgttgctagaaaatcagctaccttggtttgtgctcgagtttttctataacctaactgagccaggtagccctgaatcccttagtaatgtggtaatagacttcttcagatatgcaatggctgatcctaaaattttcagcgatcccaatcccaagtctcctggtaagatccttcccaatcccaagtctcctggtaagatccttcacatacttgatctgattagaactgccctcgttgaaaatcatctccaaagttcgccagaagcctccaaatcaaaccacttgccacagaggataccttgtgctactgctctttcagaggcaggagttaaatttgaaaagggctccccaggttgcatattggacattgcgttcaaagatggcgttttcaccattcctcctctggctatcgatgagaggacgggtcctttgttcaggaacctaatggccttcgagcagtgttatcacagtcacgagcacaagataacatcctacgcggttttgatggataacctcatcgatacgaacaaggatgtggattttctatgtgagaaagaaatagtagccaactggttgagtgccgatgatgcttcgaagttcttcaacgatctatacaatgacaccacagtcgttgactttttctacaagaaactctgcgatgatgttaataattatcacaaaaagcgatggaataagtatagagagaaactgaaacgtgattattttggtacaccatggtctactatctcttttgttgcagcttctgtcctcctggtcctcaccgtcttgcagaccatatacacaatccacccatactattatcctcgggactccggtgaccagtggccgaccggggactcctgtggcggactccggcgactggtgacccgactccagcgaccggtgactggaatccggcgaccgaagcggtcggggagtggttgtgtaaggggagcggagtcgaatcgggctgggatcgaagtcagatcggcattggggttgagttgtggcaatgggccttggattggtggtttgggtgacggtggcgctcgaaggttgaaaccgagactactccttgctcccatttacaacaccatctacgttgtcgtctccgattgtgatttcggacgagctcgactgcgcgagcagcagcgactgggatggtgggctttgacagtgggctcaaggtcgacgaagattgcgcctgggatgtgcttgccggcgccagtctcaaagaaaaaggtgtcgaaggcgttgtcgccactaccgacggtcttgtcgatcagcatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

602

Amino Acids

67.97

Weight (kDa)

8.31

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1142, 1792
AccB1I GGYRCC 1 cut(s) 1738
AccBSI CCGCTC 1 cut(s) 1472
AccI GTMKAC 2 cut(s) 1256, 1706
AccII CGCG 3 cut(s) 274, 1013, 1659
AciI CCGC 4 cut(s) 1013, 1383, 1444, 1472
AclWI GGATC 5 cut(s) 635, 653, 679, 709, 1499
AcoI YGGCCR 1 cut(s) 1361
AcsI RAATTY 3 cut(s) 6, 648, 848
AcuI CTGAAG 1 cut(s) 607
AcvI CACGTG 1 cut(s) 484
AcyI GRCGYC 1 cut(s) 1739
AfaI GTAC 2 cut(s) 277, 1246
AfiI CCNNNNNNNGG 4 cut(s) 1396, 1417, 1424, 1541
AflIII ACRYGT 2 cut(s) 116, 483
AgeI ACCGGT 1 cut(s) 1417
AgsI TTSAA 8 cut(s) 91, 130, 308, 755, 854, 892, 1120, 1576
AjnI CCWGG 6 cut(s) 580, 676, 706, 865, 1287, 1720
AleI CACNNNNGTG 1 cut(s) 207
AloI GAACNNNNNNTCC 2 cut(s) 872, 904
AluBI AGCT 5 cut(s) 85, 300, 538, 1277, 1649
AluI AGCT 5 cut(s) 85, 300, 538, 1277, 1649
Alw21I GWGCWC 3 cut(s) 555, 996, 1651
Alw26I GTCTC 6 cut(s) 190, 678, 708, 1576, 1630, 1750
AlwI GGATC 5 cut(s) 635, 653, 679, 709, 1499
AlwNI CAGNNNCTG 2 cut(s) 1280, 1672
Ama87I CYCGRG 4 cut(s) 137, 342, 554, 1341
AoxI GGCC 3 cut(s) 963, 1361, 1532
ApeKI GCWGC 3 cut(s) 1274, 1663, 1666
ApoI RAATTY 3 cut(s) 6, 648, 848
ArsI GACNNNNNNTTYG 4 cut(s) 928, 960, 1757, 1789
AsiGI ACCGGT 1 cut(s) 1417
Asp700I GAANNNNTTC 2 cut(s) 429, 1115
AspLEI GCGC 4 cut(s) 1565, 1659, 1720, 1741
AspS9I GGNCC 4 cut(s) 194, 941, 1291, 1532
AsuC2I CCSGG 1 cut(s) 1369
AsuHPI GGTGA 9 cut(s) 93, 194, 227, 898, 1288, 1364, 1411, 1432, 1565
AsuII TTCGAA 1 cut(s) 1109
AvaI CYCGRG 4 cut(s) 137, 342, 554, 1341
AvaII GGWCC 3 cut(s) 194, 941, 1291
BanI GGYRCC 1 cut(s) 1738
BanII GRGCYC 3 cut(s) 863, 1651, 1700
BauI CACGAG 1 cut(s) 989
BbrPI CACGTG 1 cut(s) 484
BbsI GAAGAC 1 cut(s) 287
Bbv12I GWGCWC 3 cut(s) 555, 996, 1651
BbvI GCAGC 3 cut(s) 1286, 1675, 1678
BccI CCATC 6 cut(s) 401, 890, 1015, 1197, 1619, 1671
BciT130I CCWGG 6 cut(s) 582, 678, 708, 867, 1289, 1722
BciVI GTATCC 1 cut(s) 804
BcnI CCSGG 1 cut(s) 1369
BcoDI GTCTC 6 cut(s) 190, 678, 708, 1576, 1630, 1750
BfaI CTAG 2 cut(s) 527, 1807
BfoI RGCGCY 2 cut(s) 1566, 1742
BfuI GTATCC 1 cut(s) 804
BisI GCNGC 3 cut(s) 1275, 1664, 1667
BlsI GCNGC 3 cut(s) 1276, 1665, 1668
Bme1390I CCNGG 7 cut(s) 582, 678, 708, 867, 1289, 1369, 1722
Bme18I GGWCC 3 cut(s) 194, 941, 1291
BmeT110I CYCGRG 4 cut(s) 137, 342, 554, 1341
BmgT120I GGNCC 4 cut(s) 194, 941, 1291, 1532
BmiI GGNNCC 5 cut(s) 196, 862, 942, 956, 1740
BmrFI CCNGG 7 cut(s) 582, 678, 708, 867, 1289, 1369, 1722
BmrI ACTGGG 2 cut(s) 332, 1682
BmsI GCATC 4 cut(s) 132, 321, 384, 1093
BmuI ACTGGG 2 cut(s) 332, 1682
BpiI GAAGAC 1 cut(s) 287
BpmI CTGGAG 1 cut(s) 1394
Bpu14I TTCGAA 1 cut(s) 1109
BpuEI CTTGAG 1 cut(s) 1684
BpuMI CCSGG 1 cut(s) 1369
Bsa29I ATCGAT 2 cut(s) 927, 1035
BsaAI YACGTR 1 cut(s) 484
BsaBI GATNNNNATC 2 cut(s) 663, 1802
BsaHI GRCGYC 1 cut(s) 1739
BsaWI WCCGGW 2 cut(s) 1349, 1417
BsaXI ACNNNNNCTCC 4 cut(s) 898, 928, 1444, 1474
Bsc4I CCNNNNNNNGG 4 cut(s) 1396, 1417, 1424, 1541
Bse118I RCCGGY 2 cut(s) 1417, 1735
Bse1I ACTGG 8 cut(s) 327, 333, 1091, 1357, 1401, 1429, 1677, 1742
Bse3DI GCAATG 3 cut(s) 639, 882, 1534
Bse8I GATNNNNATC 2 cut(s) 663, 1802
BseBI CCWGG 6 cut(s) 582, 678, 708, 867, 1289, 1722
BseCI ATCGAT 2 cut(s) 927, 1035
BseGI GGATG 5 cut(s) 52, 1004, 1054, 1682, 1731
BseJI GATNNNNATC 2 cut(s) 663, 1802
BseLI CCNNNNNNNGG 4 cut(s) 1396, 1417, 1424, 1541
BseMI GCAATG 3 cut(s) 639, 882, 1534
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 8 cut(s) 327, 333, 1091, 1357, 1401, 1429, 1677, 1742
BseRI GAGGAG 1 cut(s) 906
BseXI GCAGC 3 cut(s) 1286, 1675, 1678
BseYI CCCAGC 1 cut(s) 1487
Bsh1236I CGCG 3 cut(s) 274, 1013, 1659
Bsh1285I CGRYCG 4 cut(s) 1368, 1418, 1439, 1448
BshFI GGCC 3 cut(s) 965, 1363, 1534
BshNI GGYRCC 1 cut(s) 1738
BshTI ACCGGT 1 cut(s) 1417
BshVI ATCGAT 2 cut(s) 927, 1035
BsiEI CGRYCG 4 cut(s) 1368, 1418, 1439, 1448
BsiHKAI GWGCWC 3 cut(s) 555, 996, 1651
BsiHKCI CYCGRG 4 cut(s) 137, 342, 554, 1341
BsiSI CCGG 6 cut(s) 1350, 1368, 1390, 1418, 1432, 1736
BsiWI CGTACG 1 cut(s) 275
BslFI GGGAC 4 cut(s) 333, 339, 1358, 1385
BslI CCNNNNNNNGG 4 cut(s) 1396, 1417, 1424, 1541
BsmAI GTCTC 6 cut(s) 190, 678, 708, 1576, 1630, 1750
BsmBI CGTCTC 1 cut(s) 1630
BsmFI GGGAC 4 cut(s) 333, 339, 1358, 1385
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 3 cut(s) 965, 1363, 1534
BsoBI CYCGRG 4 cut(s) 137, 342, 554, 1341
Bsp119I TTCGAA 1 cut(s) 1109
Bsp1286I GDGCHC 5 cut(s) 555, 863, 996, 1651, 1700
Bsp19I CCATGG 1 cut(s) 1250
BspACI CCGC 4 cut(s) 1013, 1383, 1444, 1472
BspANI GGCC 3 cut(s) 965, 1363, 1534
BspCNI CTCAG 1 cut(s) 568
BspDI ATCGAT 2 cut(s) 927, 1035
BspFNI CGCG 3 cut(s) 274, 1013, 1659
BspLI GGNNCC 5 cut(s) 196, 862, 942, 956, 1740
BspPI GGATC 5 cut(s) 635, 653, 679, 709, 1499
BspT104I TTCGAA 1 cut(s) 1109
BspT107I GGYRCC 1 cut(s) 1738
BsrBI CCGCTC 1 cut(s) 1472
BsrDI GCAATG 3 cut(s) 639, 882, 1534
BsrFI RCCGGY 2 cut(s) 1417, 1735
BsrI ACTGG 8 cut(s) 327, 333, 1091, 1357, 1401, 1429, 1677, 1742
BssAI RCCGGY 2 cut(s) 1417, 1735
BssNI GRCGYC 1 cut(s) 1739
BssSI CACGAG 1 cut(s) 989
BssT1I CCWWGG 4 cut(s) 291, 542, 1250, 1535
Bst2BI CACGAG 1 cut(s) 989
Bst2UI CCWGG 6 cut(s) 582, 678, 708, 867, 1289, 1722
Bst4CI ACNGT 6 cut(s) 986, 1144, 1300, 1559, 1693, 1789
BstACI GRCGYC 1 cut(s) 1739
BstBAI YACGTR 1 cut(s) 484
BstBI TTCGAA 1 cut(s) 1109
BstC8I GCNNGC 3 cut(s) 1661, 1733, 1737
BstDEI CTNAG 2 cut(s) 576, 599
BstDSI CCRYGG 1 cut(s) 1250
BstEII GGTNACC 2 cut(s) 1352, 1399
BstF5I GGATG 5 cut(s) 52, 1004, 1054, 1682, 1731
BstFNI CGCG 3 cut(s) 274, 1013, 1659
BstH2I RGCGCY 2 cut(s) 1566, 1742
BstHHI GCGC 4 cut(s) 1565, 1659, 1720, 1741
BstMAI GTCTC 6 cut(s) 190, 678, 708, 1576, 1630, 1750
BstMCI CGRYCG 4 cut(s) 1368, 1418, 1439, 1448
BstMWI GCNNNNNNNGC 3 cut(s) 1103, 1441, 1663
BstNI CCWGG 6 cut(s) 582, 678, 708, 867, 1289, 1722
BstNSI RCATGY 1 cut(s) 120
BstPI GGTNACC 2 cut(s) 1352, 1399
BstSCI CCNGG 7 cut(s) 580, 676, 706, 865, 1287, 1367, 1720
BstUI CGCG 3 cut(s) 274, 1013, 1659
BstV1I GCAGC 3 cut(s) 1286, 1675, 1678
BstV2I GAAGAC 1 cut(s) 287
BstX2I RGATCY 2 cut(s) 684, 714
BstYI RGATCY 2 cut(s) 684, 714
Bsu15I ATCGAT 2 cut(s) 927, 1035
BsuI GTATCC 1 cut(s) 804
BsuRI GGCC 3 cut(s) 965, 1363, 1534
BsuTUI ATCGAT 2 cut(s) 927, 1035
BtgI CCRYGG 1 cut(s) 1250
BtgZI GCGATG 2 cut(s) 1188, 1216
BtsCI GGATG 5 cut(s) 52, 1004, 1054, 1682, 1731
BtsI GCAGTG 1 cut(s) 980
BtsIMutI CAGTG 3 cut(s) 980, 1364, 1698
Cac8I GCNNGC 3 cut(s) 1661, 1733, 1737
CaiI CAGNNNCTG 2 cut(s) 1280, 1672
CfoI GCGC 4 cut(s) 1565, 1659, 1720, 1741
Cfr10I RCCGGY 2 cut(s) 1417, 1735
Cfr13I GGNCC 4 cut(s) 194, 941, 1291, 1532
ClaI ATCGAT 2 cut(s) 927, 1035
Csp6I GTAC 2 cut(s) 276, 1245
CspAI ACCGGT 1 cut(s) 1417
CspCI CAANNNNNGTGG 2 cut(s) 1129, 1164
CviAII CATG 4 cut(s) 117, 360, 512, 1251
CviQI GTAC 2 cut(s) 276, 1245
DdeI CTNAG 2 cut(s) 576, 599
DinI GGCGCC 1 cut(s) 1740
DraI TTTAAA 1 cut(s) 258
DrdI GACNNNNNNGTC 2 cut(s) 1142, 1792
DseDI GACNNNNNNGTC 2 cut(s) 1142, 1792
EaeI YGGCCR 1 cut(s) 1361
EciI GGCGGA 1 cut(s) 1398
Ecl136II GAGCTC 1 cut(s) 1649
Eco130I CCWWGG 4 cut(s) 291, 542, 1250, 1535
Eco24I GRGCYC 3 cut(s) 863, 1651, 1700
Eco47I GGWCC 3 cut(s) 194, 941, 1291
Eco53kI GAGCTC 1 cut(s) 1649
Eco57I CTGAAG 1 cut(s) 607
Eco72I CACGTG 1 cut(s) 484
Eco88I CYCGRG 4 cut(s) 137, 342, 554, 1341
Eco91I GGTNACC 2 cut(s) 1352, 1399
EcoICRI GAGCTC 1 cut(s) 1649
EcoO109I RGGNCCY 1 cut(s) 941
EcoO65I GGTNACC 2 cut(s) 1352, 1399
EcoRII CCWGG 6 cut(s) 580, 676, 706, 865, 1287, 1720
EcoT14I CCWWGG 4 cut(s) 291, 542, 1250, 1535
EcoT38I GRGCYC 3 cut(s) 863, 1651, 1700
EgeI GGCGCC 1 cut(s) 1740
EheI GGCGCC 1 cut(s) 1740
ErhI CCWWGG 4 cut(s) 291, 542, 1250, 1535
Esp3I CGTCTC 1 cut(s) 1630
FaeI CATG 4 cut(s) 120, 363, 515, 1254
FaqI GGGAC 4 cut(s) 333, 339, 1358, 1385
FatI CATG 4 cut(s) 116, 359, 511, 1250
FblI GTMKAC 2 cut(s) 1256, 1706
Fnu4HI GCNGC 3 cut(s) 1275, 1664, 1667
FokI GGATG 5 cut(s) 59, 991, 1061, 1689, 1738
FriOI GRGCYC 3 cut(s) 863, 1651, 1700
Fsp4HI GCNGC 3 cut(s) 1275, 1664, 1667
FspBI CTAG 2 cut(s) 527, 1807
GlaI GCGC 4 cut(s) 1564, 1658, 1719, 1740
GluI GCNGC 3 cut(s) 1275, 1664, 1667
GsaI CCCAGC 1 cut(s) 1491
GsuI CTGGAG 1 cut(s) 1394
HaeII RGCGCY 2 cut(s) 1566, 1742
HaeIII GGCC 3 cut(s) 965, 1363, 1534
HapII CCGG 6 cut(s) 1350, 1368, 1390, 1418, 1432, 1736
HhaI GCGC 4 cut(s) 1565, 1659, 1720, 1741
Hin1I GRCGYC 1 cut(s) 1739
Hin1II CATG 4 cut(s) 120, 363, 515, 1254
Hin6I GCGC 4 cut(s) 1563, 1657, 1718, 1739
HinP1I GCGC 4 cut(s) 1563, 1657, 1718, 1739
HincII GTYRAC 2 cut(s) 1150, 1707
HindII GTYRAC 2 cut(s) 1150, 1707
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 9 cut(s) 17, 593, 1346, 1373, 1386, 1407, 1428, 1475, 1480
HpaII CCGG 6 cut(s) 1350, 1368, 1390, 1418, 1432, 1736
HphI GGTGA 9 cut(s) 93, 194, 227, 898, 1288, 1364, 1411, 1432, 1565
Hpy166II GTNNAC 4 cut(s) 1150, 1247, 1257, 1707
Hpy188I TCNGA 8 cut(s) 194, 435, 626, 735, 835, 1502, 1630, 1643
Hpy188III TCNNGA 6 cut(s) 137, 371, 418, 952, 989, 1343
Hpy8I GTNNAC 4 cut(s) 1150, 1247, 1257, 1707
Hpy99I CGWCG 3 cut(s) 153, 1711, 1789
HpyAV CCTTC 9 cut(s) 82, 120, 275, 430, 698, 728, 976, 1563, 1759
HpyCH4III ACNGT 6 cut(s) 986, 1144, 1300, 1559, 1693, 1789
HpyCH4IV ACGT 3 cut(s) 483, 1231, 1617
HpyCH4V TGCA 5 cut(s) 123, 632, 873, 1274, 1306
HpyF10VI GCNNNNNNNGC 3 cut(s) 1103, 1441, 1663
HpyF3I CTNAG 2 cut(s) 576, 599
HpySE526I ACGT 3 cut(s) 483, 1231, 1617
Hsp92I GRCGYC 1 cut(s) 1739
Hsp92II CATG 4 cut(s) 120, 363, 515, 1254
HspAI GCGC 4 cut(s) 1563, 1657, 1718, 1739
KasI GGCGCC 1 cut(s) 1738
KroI GCCGGC 1 cut(s) 1735
KroNI GCCGGC 1 cut(s) 1737
LmnI GCTCC 3 cut(s) 866, 1469, 1600
Lsp1109I GCAGC 3 cut(s) 1286, 1675, 1678
LweI GCATC 4 cut(s) 132, 321, 384, 1093
MaeI CTAG 2 cut(s) 527, 1807
MaeII ACGT 3 cut(s) 483, 1231, 1617
MaeIII GTNAC 6 cut(s) 464, 986, 1352, 1399, 1420, 1553
MbiI CCGCTC 1 cut(s) 1472
MboII GAAGA 7 cut(s) 62, 118, 292, 509, 613, 1108, 1723
MflI RGATCY 2 cut(s) 684, 714
MhlI GDGCHC 5 cut(s) 555, 863, 996, 1651, 1700
MluCI AATT 6 cut(s) 6, 222, 425, 648, 848, 1186
Mly113I GGCGCC 1 cut(s) 1739
MlyI GAGTC 5 cut(s) 1340, 1367, 1380, 1401, 1484
MroNI GCCGGC 1 cut(s) 1735
MroXI GAANNNNTTC 2 cut(s) 429, 1115
MseI TTAA 4 cut(s) 225, 257, 846, 1182
MslI CAYNNNNRTG 2 cut(s) 207, 392
MspI CCGG 6 cut(s) 1350, 1368, 1390, 1418, 1432, 1736
MspR9I CCNGG 7 cut(s) 582, 678, 708, 867, 1289, 1369, 1722
Mva1269I GAATGC 1 cut(s) 97
MvaI CCWGG 6 cut(s) 582, 678, 708, 867, 1289, 1722
MvnI CGCG 3 cut(s) 274, 1013, 1659
MwoI GCNNNNNNNGC 3 cut(s) 1103, 1441, 1663
NaeI GCCGGC 1 cut(s) 1737
NarI GGCGCC 1 cut(s) 1739
NciI CCSGG 1 cut(s) 1369
NcoI CCATGG 1 cut(s) 1250
NgoMIV GCCGGC 1 cut(s) 1735
NlaIII CATG 4 cut(s) 120, 363, 515, 1254
NlaIV GGNNCC 5 cut(s) 196, 862, 942, 956, 1740
NmuCI GTSAC 6 cut(s) 464, 986, 1352, 1399, 1420, 1553
NspI RCATGY 1 cut(s) 120
NspV TTCGAA 1 cut(s) 1109
OliI CACNNNNGTG 1 cut(s) 207
PaeR7I CTCGAG 1 cut(s) 554
PciI ACATGT 1 cut(s) 116
PcsI WCGNNNNNNNCGW 2 cut(s) 1781, 1793
PctI GAATGC 1 cut(s) 97
PdiI GCCGGC 1 cut(s) 1737
PdmI GAANNNNTTC 2 cut(s) 429, 1115
PfeI GAWTC 4 cut(s) 17, 593, 1428, 1480
Pfl23II CGTACG 1 cut(s) 275
PinAI ACCGGT 1 cut(s) 1417
PkrI GCNGC 3 cut(s) 1276, 1665, 1668
PleI GAGTC 5 cut(s) 1340, 1367, 1380, 1401, 1483
PluTI GGCGCC 1 cut(s) 1742
PmaCI CACGTG 1 cut(s) 484
PmlI CACGTG 1 cut(s) 484
PpsI GAGTC 5 cut(s) 1340, 1367, 1380, 1401, 1483
Ppu21I YACGTR 1 cut(s) 484
PpuMI RGGWCCY 1 cut(s) 941
PscI ACATGT 1 cut(s) 116
Psp124BI GAGCTC 1 cut(s) 1651
Psp5II RGGWCCY 1 cut(s) 941
Psp6I CCWGG 6 cut(s) 580, 676, 706, 865, 1287, 1720
PspCI CACGTG 1 cut(s) 484
PspEI GGTNACC 2 cut(s) 1352, 1399
PspFI CCCAGC 1 cut(s) 1487
PspGI CCWGG 6 cut(s) 580, 676, 706, 865, 1287, 1720
PspLI CGTACG 1 cut(s) 275
PspN4I GGNNCC 5 cut(s) 196, 862, 942, 956, 1740
PspPI GGNCC 4 cut(s) 194, 941, 1291, 1532
PspPPI RGGWCCY 1 cut(s) 941
PspXI VCTCGAGB 1 cut(s) 554
PstNI CAGNNNCTG 2 cut(s) 1280, 1672
PsuI RGATCY 2 cut(s) 684, 714
RsaI GTAC 2 cut(s) 277, 1246
RsaNI GTAC 2 cut(s) 276, 1245
RseI CAYNNNNRTG 2 cut(s) 207, 392
SacI GAGCTC 1 cut(s) 1651
SalI GTCGAC 1 cut(s) 1705
SaqAI TTAA 4 cut(s) 225, 257, 846, 1182
SatI GCNGC 3 cut(s) 1275, 1664, 1667
Sau96I GGNCC 4 cut(s) 194, 941, 1291, 1532
SchI GAGTC 5 cut(s) 1340, 1367, 1380, 1401, 1484
ScrFI CCNGG 7 cut(s) 582, 678, 708, 867, 1289, 1369, 1722
SduI GDGCHC 5 cut(s) 555, 863, 996, 1651, 1700
SfaNI GCATC 4 cut(s) 132, 321, 384, 1093
SfoI GGCGCC 1 cut(s) 1740
Sfr274I CTCGAG 1 cut(s) 554
SfuI TTCGAA 1 cut(s) 1109
SinI GGWCC 3 cut(s) 194, 941, 1291
SlaI CTCGAG 1 cut(s) 554
SmiMI CAYNNNNRTG 2 cut(s) 207, 392
SmlI CTYRAG 2 cut(s) 554, 1699
SmoI CTYRAG 2 cut(s) 554, 1699
Sse9I AATT 6 cut(s) 6, 222, 425, 648, 848, 1186
SsiI CCGC 4 cut(s) 1013, 1383, 1444, 1472
SspDI GGCGCC 1 cut(s) 1738
SspMI CTAG 2 cut(s) 527, 1807
SstI GAGCTC 1 cut(s) 1651
StyD4I CCNGG 7 cut(s) 580, 676, 706, 865, 1287, 1367, 1720
StyI CCWWGG 4 cut(s) 291, 542, 1250, 1535
TaaI ACNGT 6 cut(s) 986, 1144, 1300, 1559, 1693, 1789
TaiI ACGT 3 cut(s) 486, 1234, 1620
TaqII GACCGA 1 cut(s) 1453
TasI AATT 6 cut(s) 6, 222, 425, 648, 848, 1186
TfiI GAWTC 4 cut(s) 17, 593, 1428, 1480
Tru1I TTAA 4 cut(s) 225, 257, 846, 1182
Tru9I TTAA 4 cut(s) 225, 257, 846, 1182
TscAI CASTG 3 cut(s) 980, 1364, 1698
TseFI GTSAC 6 cut(s) 464, 986, 1352, 1399, 1420, 1553
TseI GCWGC 3 cut(s) 1274, 1663, 1666
Tsp45I GTSAC 6 cut(s) 464, 986, 1352, 1399, 1420, 1553
TspDTI ATGAA 5 cut(s) 63, 69, 356, 369, 376
TspRI CASTG 3 cut(s) 980, 1364, 1698
VpaK11BI GGWCC 3 cut(s) 194, 941, 1291
XapI RAATTY 3 cut(s) 6, 648, 848
XceI RCATGY 1 cut(s) 120
XcmI CCANNNNNNNNNTGG 1 cut(s) 916
XhoI CTCGAG 1 cut(s) 554
XmiI GTMKAC 2 cut(s) 1256, 1706
XmnI GAANNNNTTC 2 cut(s) 429, 1115
XspI CTAG 2 cut(s) 527, 1807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.