FvH4_6g53260

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000188
Physical Location & Seq
Reverse (-)
39080596 .. 39084823
4228 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53260.t2

Sequence Viewer

Length: 1461 bp
ATGCCGGCGCCGGCCATGTGGTGGATTTGGAGGCAGGGAGAGAGAGAGAGAGGAGGCATGGCAAGTGGGAATGATATAGAAAAGGGTCAAGTGAATGGAAGCGATTCAATTAATGCAGAACGCGGAGGCATAAATGTTGGACAATTGAAATTCACCTTAAACACAAGCCTTTGGGAGGCCGACTCACCTTTGCCTTTTTCATGTTGCATCTTCAGAGTCCCCGAGGTTCTACGACGACGAAAGGTACAAGCATACGAACCTGACATAGTCTCAATCGGACCCCTTCACCGTAGTGCTGATCCAAAATTCAAACTTGTGGAAAAGGTGAAAGAATGGTATCTAAAATGCCTTCTCGAGCGTCCGACGACAACAATAACCTTGGATAGCTTGATCGAAGGCATGAAGGAACTTGAAAGAGAAGCCCGAGGTCGCTATTCAGACCCACGCAATGATCTTGACCAAAACGACTTCATACGGATGCTCATACTCGACGGTTGTTTCTTGATAGAATTGTTTCGGAAGGCACGTGATGAAAGTCGACAAGATTATGACGACCCCATTTTCAACGCGCCTTGTATGCTCGAGTATCTATACCATGATCTTCTGTTGCTAGAAAATCAGCTTCCTTGGTCTGTGCTTAAGTATTTCTATGACCTAATCGAGAGCGGTAACCCTGGGGCTGAACCCCTCAGTAAAGTGGTGATTGACTTCTTCAGAGATTCAGTGGCTGATCCTAGCATTTTCAGCGACCGCAAATCCGAATCTACTCCTGAGATTCTTCACATTGTTGATCTAATCAGAACTTCTCTCGTTCAGGAACATAAAGACGAACCTGATGAAGACCCGAAGGCAGCTCCCCTCCCATCAAACCACTTGCCACAGAGGATACCTAGTGCTGCTACTCTTACAGAAGCAGGCGTTACATTTAGAATACCCAAAGAACCCAAGGCAGGTTCGCCAGGAGGTTGCATACTGAACATAACGTTCAAAGACGGCGTGTTCAGCATTCCTCCTCTGGCTATCGATGAGAGGACAGATCCTTTGTTCAGGAACCTCATGGCCTACGAGCAGTGTTATCACAGTTGCACCCACAAGATAACATCCTACGCGGTTTTGATGGATAATCTCATTGATACGGCAAAGGACGTGGATCTTCTATGTGAGAAAGGGATAGTAGCCAACTGGTTGAGTTCTGAGGATGCTTCCAAGTTCTTCAACGATCTATACGATAATACTACAGTCATCGACTTTGTCTACAAGAGACTCTGCACGAGGGTGAATGACTATCACAGATCTGCATGGATGAGGAGAACATGGATCAGGTGGAAAAACAAATTGAGAAGTGATTATTTTGATACACCATGGTCGACCATCTCTTTCTTTGCAGCTTTTGTGCTCCTGGTCCTCACCTTCTTGCAGACCGTATACACAATCCAGCAATACCGTCATTCTCCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

487

Amino Acids

55.99

Weight (kDa)

5.39

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 51 - 450 3.1e-111 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 941
AccB1I GGYRCC 1 cut(s) 7
AccB7I CCANNNNNTGG 1 cut(s) 21
AccBSI CCGCTC 1 cut(s) 666
AccI GTMKAC 4 cut(s) 538, 1254, 1367, 1425
AccII CGCG 3 cut(s) 123, 569, 1109
AciI CCGC 4 cut(s) 123, 666, 751, 1109
AclI AACGTT 1 cut(s) 983
AclWI GGATC 5 cut(s) 293, 725, 1031, 1158, 1325
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 2 cut(s) 149, 305
AcuI CTGAAG 2 cut(s) 196, 697
AcvI CACGTG 1 cut(s) 527
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 3 cut(s) 21, 175, 950
AflII CTTAAG 1 cut(s) 638
AgsI TTSAA 7 cut(s) 108, 148, 310, 413, 565, 988, 1216
AjiI CACGTC 1 cut(s) 1147
AjnI CCWGG 3 cut(s) 673, 958, 1398
AleI CACNNNNGTG 2 cut(s) 291, 1274
AluBI AGCT 4 cut(s) 387, 622, 854, 1388
AluI AGCT 4 cut(s) 387, 622, 854, 1388
Alw21I GWGCWC 1 cut(s) 1398
Alw26I GTCTC 2 cut(s) 274, 1255
AlwI GGATC 5 cut(s) 293, 725, 1031, 1158, 1325
AlwNI CAGNNNCTG 1 cut(s) 728
Ama87I CYCGRG 4 cut(s) 221, 353, 423, 581
AoxI GGCC 3 cut(s) 12, 177, 1059
ApeKI GCWGC 3 cut(s) 851, 896, 1385
ApoI RAATTY 2 cut(s) 149, 305
ArsI GACNNNNNNTTYG 2 cut(s) 1024, 1056
AseI ATTAAT 1 cut(s) 111
Asp700I GAANNNNTTC 2 cut(s) 103, 513
AspLEI GCGC 2 cut(s) 10, 571
AspS9I GGNCC 2 cut(s) 278, 1402
AsuHPI GGTGA 7 cut(s) 145, 177, 278, 337, 712, 1288, 1399
AvaI CYCGRG 4 cut(s) 221, 353, 423, 581
AvaII GGWCC 2 cut(s) 278, 1402
BanI GGYRCC 1 cut(s) 7
BauI CACGAG 1 cut(s) 1270
BbrPI CACGTG 1 cut(s) 527
BbsI GAAGAC 1 cut(s) 846
Bbv12I GWGCWC 1 cut(s) 1398
BbvI GCAGC 3 cut(s) 863, 883, 1397
BccI CCATC 3 cut(s) 871, 1111, 1379
BceAI ACGGC 2 cut(s) 1009, 1152
BciT130I CCWGG 3 cut(s) 675, 960, 1400
BciVI GTATCC 1 cut(s) 879
BcoDI GTCTC 2 cut(s) 274, 1255
BfaI CTAG 3 cut(s) 611, 735, 891
BfmI CTRYAG 1 cut(s) 1236
BfoI RGCGCY 1 cut(s) 11
BfrI CTTAAG 1 cut(s) 638
BfuAI ACCTGC 1 cut(s) 941
BfuI GTATCC 1 cut(s) 879
BglII AGATCT 1 cut(s) 1292
BisI GCNGC 3 cut(s) 852, 897, 1386
BlsI GCNGC 3 cut(s) 853, 898, 1387
Bme1390I CCNGG 3 cut(s) 675, 960, 1400
Bme18I GGWCC 2 cut(s) 278, 1402
BmeT110I CYCGRG 4 cut(s) 221, 353, 423, 581
BmgBI CACGTC 1 cut(s) 1147
BmgT120I GGNCC 2 cut(s) 278, 1402
BmiI GGNNCC 3 cut(s) 9, 280, 1052
BmrFI CCNGG 3 cut(s) 675, 960, 1400
BmsI GCATC 3 cut(s) 216, 468, 1189
BpiI GAAGAC 1 cut(s) 846
BplI GAGNNNNNCTC 2 cut(s) 167, 199
Bsa29I ATCGAT 1 cut(s) 1023
BsaAI YACGTR 1 cut(s) 527
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 8 cut(s) 222, 378, 424, 626, 673, 674, 945, 1361
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 175, 950
Bse118I RCCGGY 2 cut(s) 4, 10
Bse1I ACTGG 1 cut(s) 1187
Bse3DI GCAATG 1 cut(s) 454
BseBI CCWGG 3 cut(s) 675, 960, 1400
BseCI ATCGAT 1 cut(s) 1023
BseDI CCNNGG 8 cut(s) 222, 378, 424, 626, 673, 674, 945, 1361
BseGI GGATG 4 cut(s) 483, 1100, 1204, 1308
BseLI CCNNNNNNNGG 3 cut(s) 21, 175, 950
BseMI GCAATG 1 cut(s) 454
BseMII CTCAG 3 cut(s) 703, 762, 1185
BseNI ACTGG 1 cut(s) 1187
BseRI GAGGAG 3 cut(s) 66, 1002, 1321
BseXI GCAGC 3 cut(s) 863, 883, 1397
BsgI GTGCAG 1 cut(s) 1252
Bsh1236I CGCG 3 cut(s) 123, 569, 1109
Bsh1285I CGRYCG 1 cut(s) 751
BshFI GGCC 3 cut(s) 14, 179, 1061
BshNI GGYRCC 1 cut(s) 7
BshVI ATCGAT 1 cut(s) 1023
BsiEI CGRYCG 1 cut(s) 751
BsiHKAI GWGCWC 1 cut(s) 1398
BsiHKCI CYCGRG 4 cut(s) 221, 353, 423, 581
BsiSI CCGG 2 cut(s) 5, 11
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 3 cut(s) 21, 175, 950
BsmAI GTCTC 2 cut(s) 274, 1255
BsmFI GGGAC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 1005
BsnI GGCC 3 cut(s) 14, 179, 1061
BsoBI CYCGRG 4 cut(s) 221, 353, 423, 581
Bsp1286I GDGCHC 1 cut(s) 1398
Bsp19I CCATGG 1 cut(s) 1361
BspACI CCGC 4 cut(s) 123, 666, 751, 1109
BspANI GGCC 3 cut(s) 14, 179, 1061
BspCNI CTCAG 3 cut(s) 702, 763, 1186
BspDI ATCGAT 1 cut(s) 1023
BspFNI CGCG 3 cut(s) 123, 569, 1109
BspLI GGNNCC 3 cut(s) 9, 280, 1052
BspMI ACCTGC 1 cut(s) 941
BspPI GGATC 5 cut(s) 293, 725, 1031, 1158, 1325
BspT107I GGYRCC 1 cut(s) 7
BspTI CTTAAG 1 cut(s) 638
BsrBI CCGCTC 1 cut(s) 666
BsrDI GCAATG 1 cut(s) 454
BsrFI RCCGGY 2 cut(s) 4, 10
BsrI ACTGG 1 cut(s) 1187
BssAI RCCGGY 2 cut(s) 4, 10
BssECI CCNNGG 8 cut(s) 222, 378, 424, 626, 673, 674, 945, 1361
BssNAI GTATAC 1 cut(s) 1426
BssNI GRCGYC 1 cut(s) 8
BssSI CACGAG 1 cut(s) 1270
BssT1I CCWWGG 4 cut(s) 378, 626, 945, 1361
Bst1107I GTATAC 1 cut(s) 1426
Bst2BI CACGAG 1 cut(s) 1270
Bst2UI CCWGG 3 cut(s) 675, 960, 1400
Bst4CI ACNGT 6 cut(s) 290, 494, 1082, 1240, 1423, 1445
BstACI GRCGYC 1 cut(s) 8
BstAFI CTTAAG 1 cut(s) 638
BstBAI YACGTR 1 cut(s) 527
BstC8I GCNNGC 3 cut(s) 6, 12, 916
BstDEI CTNAG 3 cut(s) 689, 771, 1194
BstDSI CCRYGG 1 cut(s) 1361
BstEII GGTNACC 1 cut(s) 668
BstENI CCTNNNNNAGG 1 cut(s) 173
BstF5I GGATG 4 cut(s) 483, 1100, 1204, 1308
BstFNI CGCG 3 cut(s) 123, 569, 1109
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 2 cut(s) 10, 571
BstMAI GTCTC 2 cut(s) 274, 1255
BstMCI CGRYCG 1 cut(s) 751
BstMWI GCNNNNNNNGC 3 cut(s) 577, 744, 1002
BstNI CCWGG 3 cut(s) 675, 960, 1400
BstPI GGTNACC 1 cut(s) 668
BstSCI CCNGG 3 cut(s) 673, 958, 1398
BstSFI CTRYAG 1 cut(s) 1236
BstUI CGCG 3 cut(s) 123, 569, 1109
BstV1I GCAGC 3 cut(s) 863, 883, 1397
BstV2I GAAGAC 1 cut(s) 846
BstX2I RGATCY 3 cut(s) 1036, 1150, 1292
BstYI RGATCY 3 cut(s) 1036, 1150, 1292
BstZ17I GTATAC 1 cut(s) 1426
Bsu15I ATCGAT 1 cut(s) 1023
BsuI GTATCC 1 cut(s) 879
BsuRI GGCC 3 cut(s) 14, 179, 1061
BsuTUI ATCGAT 1 cut(s) 1023
BtgI CCRYGG 1 cut(s) 1361
BtrI CACGTC 1 cut(s) 1147
BtsCI GGATG 4 cut(s) 483, 1100, 1204, 1308
BtsI GCAGTG 1 cut(s) 1076
BtsIMutI CAGTG 2 cut(s) 729, 1076
BveI ACCTGC 1 cut(s) 941
Cac8I GCNNGC 3 cut(s) 6, 12, 916
CaiI CAGNNNCTG 1 cut(s) 728
CfoI GCGC 2 cut(s) 10, 571
Cfr10I RCCGGY 2 cut(s) 4, 10
Cfr13I GGNCC 2 cut(s) 278, 1402
ClaI ATCGAT 1 cut(s) 1023
CseI GACGC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 245
CspCI CAANNNNNGTGG 2 cut(s) 1128, 1163
CviAII CATG 9 cut(s) 16, 58, 201, 400, 596, 1057, 1299, 1314, 1362
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 3 cut(s) 689, 771, 1194
DinI GGCGCC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 12
Eco130I CCWWGG 4 cut(s) 378, 626, 945, 1361
Eco47I GGWCC 2 cut(s) 278, 1402
Eco57I CTGAAG 2 cut(s) 196, 697
Eco72I CACGTG 1 cut(s) 527
Eco88I CYCGRG 4 cut(s) 221, 353, 423, 581
Eco91I GGTNACC 1 cut(s) 668
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoO65I GGTNACC 1 cut(s) 668
EcoRII CCWGG 3 cut(s) 673, 958, 1398
EcoT14I CCWWGG 4 cut(s) 378, 626, 945, 1361
EgeI GGCGCC 1 cut(s) 9
EheI GGCGCC 1 cut(s) 9
ErhI CCWWGG 4 cut(s) 378, 626, 945, 1361
FaeI CATG 9 cut(s) 19, 61, 204, 403, 599, 1060, 1302, 1317, 1365
FaqI GGGAC 1 cut(s) 203
FatI CATG 9 cut(s) 15, 57, 200, 399, 595, 1056, 1298, 1313, 1361
FblI GTMKAC 4 cut(s) 538, 1254, 1367, 1425
Fnu4HI GCNGC 3 cut(s) 852, 897, 1386
FokI GGATG 4 cut(s) 490, 1087, 1211, 1315
Fsp4HI GCNGC 3 cut(s) 852, 897, 1386
FspBI CTAG 3 cut(s) 611, 735, 891
GlaI GCGC 2 cut(s) 9, 570
GluI GCNGC 3 cut(s) 852, 897, 1386
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 3 cut(s) 14, 179, 1061
HapII CCGG 2 cut(s) 5, 11
HgaI GACGC 1 cut(s) 347
HhaI GCGC 2 cut(s) 10, 571
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 9 cut(s) 19, 61, 204, 403, 599, 1060, 1302, 1317, 1365
Hin6I GCGC 2 cut(s) 8, 569
HinP1I GCGC 2 cut(s) 8, 569
HincII GTYRAC 2 cut(s) 539, 1368
HindII GTYRAC 2 cut(s) 539, 1368
HinfI GANTC 7 cut(s) 104, 182, 216, 719, 761, 775, 1263
HpaII CCGG 2 cut(s) 5, 11
HphI GGTGA 7 cut(s) 145, 177, 278, 337, 712, 1288, 1399
Hpy166II GTNNAC 4 cut(s) 539, 1255, 1368, 1426
Hpy188I TCNGA 9 cut(s) 215, 278, 363, 439, 519, 716, 760, 800, 1195
Hpy188III TCNNGA 7 cut(s) 353, 455, 502, 661, 770, 815, 1048
Hpy8I GTNNAC 4 cut(s) 539, 1255, 1368, 1426
Hpy99I CGWCG 4 cut(s) 237, 240, 367, 494
HpyAV CCTTC 7 cut(s) 293, 359, 389, 397, 514, 841, 1420
HpyCH4III ACNGT 6 cut(s) 290, 494, 1082, 1240, 1423, 1445
HpyCH4IV ACGT 3 cut(s) 526, 983, 1146
HpyCH4V TGCA 8 cut(s) 116, 207, 969, 1086, 1269, 1298, 1385, 1417
HpyF10VI GCNNNNNNNGC 3 cut(s) 577, 744, 1002
HpyF3I CTNAG 3 cut(s) 689, 771, 1194
HpySE526I ACGT 3 cut(s) 526, 983, 1146
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 9 cut(s) 19, 61, 204, 403, 599, 1060, 1302, 1317, 1365
HspAI GCGC 2 cut(s) 8, 569
KasI GGCGCC 1 cut(s) 7
KroI GCCGGC 2 cut(s) 4, 10
KroNI GCCGGC 2 cut(s) 6, 12
LmnI GCTCC 2 cut(s) 859, 1401
Lsp1109I GCAGC 3 cut(s) 863, 883, 1397
LweI GCATC 3 cut(s) 216, 468, 1189
MaeI CTAG 3 cut(s) 611, 735, 891
MaeII ACGT 3 cut(s) 526, 983, 1146
MaeIII GTNAC 2 cut(s) 668, 919
MbiI CCGCTC 1 cut(s) 666
MboII GAAGA 7 cut(s) 202, 593, 703, 770, 851, 1145, 1204
MfeI CAATTG 1 cut(s) 143
MflI RGATCY 3 cut(s) 1036, 1150, 1292
MhlI GDGCHC 1 cut(s) 1398
MluCI AATT 7 cut(s) 108, 143, 149, 305, 509, 1334, 1456
Mly113I GGCGCC 1 cut(s) 8
MlyI GAGTC 3 cut(s) 176, 225, 1257
MmeI TCCRAC 2 cut(s) 118, 386
MroNI GCCGGC 2 cut(s) 4, 10
MroXI GAANNNNTTC 2 cut(s) 103, 513
MseI TTAA 4 cut(s) 111, 158, 639, 1459
MslI CAYNNNNRTG 3 cut(s) 291, 476, 1274
MspCI CTTAAG 1 cut(s) 638
MspI CCGG 2 cut(s) 5, 11
MspR9I CCNGG 3 cut(s) 675, 960, 1400
MunI CAATTG 1 cut(s) 143
Mva1269I GAATGC 1 cut(s) 1005
MvaI CCWGG 3 cut(s) 675, 960, 1400
MvnI CGCG 3 cut(s) 123, 569, 1109
MwoI GCNNNNNNNGC 3 cut(s) 577, 744, 1002
NaeI GCCGGC 2 cut(s) 6, 12
NarI GGCGCC 1 cut(s) 8
NcoI CCATGG 1 cut(s) 1361
NgoMIV GCCGGC 2 cut(s) 4, 10
NlaIII CATG 9 cut(s) 19, 61, 204, 403, 599, 1060, 1302, 1317, 1365
NlaIV GGNNCC 3 cut(s) 9, 280, 1052
OliI CACNNNNGTG 2 cut(s) 291, 1274
PaeR7I CTCGAG 2 cut(s) 353, 581
PasI CCCWGGG 1 cut(s) 674
PcsI WCGNNNNNNNCGW 2 cut(s) 523, 1224
PctI GAATGC 1 cut(s) 1005
PdiI GCCGGC 2 cut(s) 6, 12
PdmI GAANNNNTTC 2 cut(s) 103, 513
PfeI GAWTC 4 cut(s) 104, 719, 761, 775
PflFI GACNNNGTC 2 cut(s) 266, 1250
PflMI CCANNNNNTGG 1 cut(s) 21
PkrI GCNGC 3 cut(s) 853, 898, 1387
PleI GAGTC 3 cut(s) 176, 224, 1257
PluTI GGCGCC 1 cut(s) 11
PmaCI CACGTG 1 cut(s) 527
PmlI CACGTG 1 cut(s) 527
PpsI GAGTC 3 cut(s) 176, 224, 1257
Ppu21I YACGTR 1 cut(s) 527
PshBI ATTAAT 1 cut(s) 111
Psp1406I AACGTT 1 cut(s) 983
Psp6I CCWGG 3 cut(s) 673, 958, 1398
PspCI CACGTG 1 cut(s) 527
PspEI GGTNACC 1 cut(s) 668
PspGI CCWGG 3 cut(s) 673, 958, 1398
PspN4I GGNNCC 3 cut(s) 9, 280, 1052
PspPI GGNCC 2 cut(s) 278, 1402
PspXI VCTCGAGB 1 cut(s) 581
PstNI CAGNNNCTG 1 cut(s) 728
PsuI RGATCY 3 cut(s) 1036, 1150, 1292
PsyI GACNNNGTC 2 cut(s) 266, 1250
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
RseI CAYNNNNRTG 3 cut(s) 291, 476, 1274
SalI GTCGAC 2 cut(s) 537, 1366
SaqAI TTAA 4 cut(s) 111, 158, 639, 1459
SatI GCNGC 3 cut(s) 852, 897, 1386
Sau96I GGNCC 2 cut(s) 278, 1402
SchI GAGTC 3 cut(s) 176, 225, 1257
ScrFI CCNGG 3 cut(s) 675, 960, 1400
SduI GDGCHC 1 cut(s) 1398
SfaNI GCATC 3 cut(s) 216, 468, 1189
SfcI CTRYAG 1 cut(s) 1236
SfoI GGCGCC 1 cut(s) 9
Sfr274I CTCGAG 2 cut(s) 353, 581
SinI GGWCC 2 cut(s) 278, 1402
SlaI CTCGAG 2 cut(s) 353, 581
SmiMI CAYNNNNRTG 3 cut(s) 291, 476, 1274
SmlI CTYRAG 3 cut(s) 353, 581, 638
SmoI CTYRAG 3 cut(s) 353, 581, 638
Sse9I AATT 7 cut(s) 108, 143, 149, 305, 509, 1334, 1456
SsiI CCGC 4 cut(s) 123, 666, 751, 1109
SspDI GGCGCC 1 cut(s) 7
SspMI CTAG 3 cut(s) 611, 735, 891
StyD4I CCNGG 3 cut(s) 673, 958, 1398
StyI CCWWGG 4 cut(s) 378, 626, 945, 1361
TaaI ACNGT 6 cut(s) 290, 494, 1082, 1240, 1423, 1445
TaiI ACGT 3 cut(s) 529, 986, 1149
TaqI TCGA 9 cut(s) 354, 393, 489, 538, 582, 660, 1023, 1245, 1367
TasI AATT 7 cut(s) 108, 143, 149, 305, 509, 1334, 1456
TfiI GAWTC 4 cut(s) 104, 719, 761, 775
Tru1I TTAA 4 cut(s) 111, 158, 639, 1459
Tru9I TTAA 4 cut(s) 111, 158, 639, 1459
TscAI CASTG 2 cut(s) 729, 1076
TseI GCWGC 3 cut(s) 851, 896, 1385
TspDTI ATGAA 5 cut(s) 189, 416, 460, 546, 852
TspGWI ACGGA 1 cut(s) 490
TspRI CASTG 2 cut(s) 729, 1076
Tth111I GACNNNGTC 2 cut(s) 266, 1250
Van91I CCANNNNNTGG 1 cut(s) 21
Vha464I CTTAAG 1 cut(s) 638
VpaK11BI GGWCC 2 cut(s) 278, 1402
VspI ATTAAT 1 cut(s) 111
XagI CCTNNNNNAGG 1 cut(s) 173
XapI RAATTY 2 cut(s) 149, 305
XhoI CTCGAG 2 cut(s) 353, 581
XmiI GTMKAC 4 cut(s) 538, 1254, 1367, 1425
XmnI GAANNNNTTC 2 cut(s) 103, 513
XspI CTAG 3 cut(s) 611, 735, 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.