Rmu_sc0003226.1_g000096

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003226.1
OG0000188
Physical Location & Seq
Forward (+)
333150 .. 334352
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003226.1_g000096.1.cds

Sequence Viewer

Length: 516 bp
atggaaaattatgttgacaatagtaccaatctcgatacttcgaataatatcactgaagttcatgagtgcagaattaatgttgaagcattgaaaaactccatgacagcaaagcttcgtagtgaatcacccttgcctgctaactgctctatcttcagagttccacaagtgctccggcgacacaagtcagaggcatatggacctgatgttgtctcaatcggaccctttcaccgaggtgggcttgatctactcgaatctcacctaactggacaagtgtcacaatcccatgtccagcatggccatgaacgtgggttaagggcgatgatcagtttcaccttggacatccaagacggtggcagatcatacgctgaaccgaccagtcaacccaatggagaggagataaaccccacatctaagatcctaccccaccccggatttcaacggaaccctgttgacttgatgcaaatgaaattttgcatcaacaaaatggtgccgtctgtgggaaggctggacgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.0

Weight (kDa)

6.43

Isoelectric Point (pI)

54.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 487
AclWI GGATC 1 cut(s) 409
AcoI YGGCCR 1 cut(s) 295
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 2 cut(s) 75, 136
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 2 cut(s) 428, 497
AgsI TTSAA 3 cut(s) 83, 91, 437
AleI CACNNNNGTG 1 cut(s) 231
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 1 cut(s) 409
AoxI GGCC 1 cut(s) 295
ApoI RAATTY 1 cut(s) 467
AseI ATTAAT 1 cut(s) 75
AspS9I GGNCC 2 cut(s) 197, 218
AsuC2I CCSGG 1 cut(s) 429
AsuHPI GGTGA 4 cut(s) 117, 218, 248, 322
AsuII TTCGAA 1 cut(s) 41
AvaII GGWCC 2 cut(s) 197, 218
BaeI ACNNNNGTAYC 2 cut(s) 7, 40
BalI TGGCCA 1 cut(s) 297
BanI GGYRCC 1 cut(s) 487
Bbv12I GWGCWC 1 cut(s) 171
BceAI ACGGC 1 cut(s) 475
BclI TGATCA 1 cut(s) 321
BcnI CCSGG 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 429
Bme18I GGWCC 2 cut(s) 197, 218
BmgT120I GGNCC 2 cut(s) 197, 218
BmiI GGNNCC 3 cut(s) 220, 443, 489
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 2 cut(s) 447, 483
BoxI GACNNNNGTC 2 cut(s) 181, 271
Bpu14I TTCGAA 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 429
BsaJI CCNNGG 3 cut(s) 229, 333, 427
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 2 cut(s) 428, 497
Bse1I ACTGG 2 cut(s) 268, 375
BseDI CCNNGG 3 cut(s) 229, 333, 427
BseGI GGATG 1 cut(s) 339
BseLI CCNNNNNNNGG 2 cut(s) 428, 497
BseNI ACTGG 2 cut(s) 268, 375
BseRI GAGGAG 1 cut(s) 407
BsgI GTGCAG 1 cut(s) 88
BshFI GGCC 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 2 cut(s) 172, 429
BslI CCNNNNNNNGG 2 cut(s) 428, 497
BsmAI GTCTC 1 cut(s) 214
BsnI GGCC 1 cut(s) 297
Bsp119I TTCGAA 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 4 cut(s) 241, 321, 356, 414
BspANI GGCC 1 cut(s) 297
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 3 cut(s) 220, 443, 489
BspPI GGATC 1 cut(s) 409
BspT104I TTCGAA 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 487
BsrI ACTGG 2 cut(s) 268, 375
BssECI CCNNGG 3 cut(s) 229, 333, 427
BssMI GATC 4 cut(s) 241, 321, 356, 414
BssT1I CCWWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 411, 513
BstF5I GGATG 1 cut(s) 339
BstKTI GATC 4 cut(s) 244, 324, 359, 417
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 4 cut(s) 241, 321, 356, 414
BstPAI GACNNNNGTC 2 cut(s) 181, 271
BstSCI CCNGG 1 cut(s) 427
BstX2I RGATCY 1 cut(s) 414
BstXI CCANNNNNNTGG 2 cut(s) 305, 350
BstYI RGATCY 1 cut(s) 414
BsuRI GGCC 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 332
BtsCI GGATG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 135
CciI TCATGA 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 197, 218
Csp6I GTAC 1 cut(s) 24
CviAII CATG 5 cut(s) 62, 100, 284, 293, 299
CviJI RGCY 4 cut(s) 112, 238, 297, 505
CviKI_1 RGCY 4 cut(s) 112, 238, 297, 505
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 2 cut(s) 411, 513
DpnI GATC 4 cut(s) 243, 323, 358, 416
DpnII GATC 4 cut(s) 241, 321, 356, 414
EaeI YGGCCR 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 333
Eco47I GGWCC 2 cut(s) 197, 218
Eco57I CTGAAG 2 cut(s) 75, 136
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 5 cut(s) 65, 103, 287, 296, 302
FaiI YATR 9 cut(s) 12, 63, 101, 193, 195, 285, 294, 300, 361
FatI CATG 5 cut(s) 61, 99, 283, 292, 298
FauNDI CATATG 1 cut(s) 193
FbaI TGATCA 1 cut(s) 321
FokI GGATG 1 cut(s) 326
HaeIII GGCC 1 cut(s) 297
HapII CCGG 2 cut(s) 172, 429
Hin1II CATG 5 cut(s) 65, 103, 287, 296, 302
HincII GTYRAC 3 cut(s) 16, 380, 451
HindII GTYRAC 3 cut(s) 16, 380, 451
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 2 cut(s) 122, 251
HpaII CCGG 2 cut(s) 172, 429
HphI GGTGA 4 cut(s) 117, 218, 248, 322
Hpy166II GTNNAC 3 cut(s) 16, 380, 451
Hpy188I TCNGA 3 cut(s) 155, 187, 218
Hpy188III TCNNGA 2 cut(s) 32, 62
Hpy8I GTNNAC 3 cut(s) 16, 380, 451
HpyAV CCTTC 1 cut(s) 495
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 3 cut(s) 69, 460, 474
HpyF3I CTNAG 2 cut(s) 411, 513
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 5 cut(s) 65, 103, 287, 296, 302
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 4 cut(s) 241, 321, 356, 414
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 9 cut(s) 147, 185, 213, 249, 302, 388, 442, 459, 491
LweI GCATC 2 cut(s) 447, 483
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 273
MalI GATC 4 cut(s) 243, 323, 358, 416
MboI GATC 4 cut(s) 241, 321, 356, 414
MboII GAAGA 1 cut(s) 142
MflI RGATCY 1 cut(s) 414
MhlI GDGCHC 1 cut(s) 171
MlsI TGGCCA 1 cut(s) 297
MluCI AATT 3 cut(s) 7, 72, 467
MluNI TGGCCA 1 cut(s) 297
MnlI CCTC 3 cut(s) 181, 224, 385
Mox20I TGGCCA 1 cut(s) 297
MscI TGGCCA 1 cut(s) 297
MseI TTAA 2 cut(s) 75, 311
MslI CAYNNNNRTG 3 cut(s) 231, 297, 303
Msp20I TGGCCA 1 cut(s) 297
MspI CCGG 2 cut(s) 172, 429
MspR9I CCNGG 1 cut(s) 429
NciI CCSGG 1 cut(s) 429
NdeI CATATG 1 cut(s) 193
NdeII GATC 4 cut(s) 241, 321, 356, 414
NlaIII CATG 5 cut(s) 65, 103, 287, 296, 302
NlaIV GGNNCC 3 cut(s) 220, 443, 489
NmuCI GTSAC 1 cut(s) 273
NspV TTCGAA 1 cut(s) 41
OliI CACNNNNGTG 1 cut(s) 231
PagI TCATGA 1 cut(s) 61
PfeI GAWTC 2 cut(s) 122, 251
PshAI GACNNNNGTC 2 cut(s) 181, 271
PshBI ATTAAT 1 cut(s) 75
PspN4I GGNNCC 3 cut(s) 220, 443, 489
PspPI GGNCC 2 cut(s) 197, 218
PsuI RGATCY 1 cut(s) 414
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
RseI CAYNNNNRTG 3 cut(s) 231, 297, 303
SaqAI TTAA 2 cut(s) 75, 311
Sau3AI GATC 4 cut(s) 241, 321, 356, 414
Sau96I GGNCC 2 cut(s) 197, 218
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 1 cut(s) 171
SetI ASST 6 cut(s) 114, 202, 235, 261, 307, 335
SfaNI GCATC 2 cut(s) 447, 483
SfuI TTCGAA 1 cut(s) 41
SinI GGWCC 2 cut(s) 197, 218
SmiMI CAYNNNNRTG 3 cut(s) 231, 297, 303
Sse9I AATT 3 cut(s) 7, 72, 467
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 350
TaiI ACGT 1 cut(s) 307
TaqI TCGA 3 cut(s) 33, 41, 249
TasI AATT 3 cut(s) 7, 72, 467
TfiI GAWTC 2 cut(s) 122, 251
Tru1I TTAA 2 cut(s) 75, 311
Tru9I TTAA 2 cut(s) 75, 311
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 273
Tsp45I GTSAC 1 cut(s) 273
TspDTI ATGAA 3 cut(s) 50, 315, 479
TspGWI ACGGA 1 cut(s) 454
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 2 cut(s) 197, 218
VspI ATTAAT 1 cut(s) 75
XapI RAATTY 1 cut(s) 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.