Rroxscaffold_3G00269130

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000188
Physical Location & Seq
Forward (+)
62061161 .. 62062451
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00269130.1

Sequence Viewer

Length: 891 bp
ATGACGGAATTAACCGTCGTCATGGAAGATGATGGCAGTAGAAATATTGATGTTGAAGCATTGGAACAGAGCATGAAAGAAAAGCTTCGCAGTGATTCACCCTTGTCTGCCAAGTGTTGCATTTTCAGAGTCCCTGAATTACTCCGGAGACATAAACCAGAGGCATATGCACCAAATATTGTTTCAATCGGACCCTTTCATCACCGTAATGTGAAACAGTGGTATTTAAATTCGCTACTCTTAAGAAAGAAGATGACTTTGAAAGCTTTGATTCAAGGTATTGATAATATTACTGTGTTTGAGAAACGCGCCCGTGCTTATTATGCAGAATCAATTGATCTTGACCAGAATCAATTCATAGAAATTTTGATACTTGATGGCTGCTTCTTATTAGAACTATTTCAGAGAACTTCCTATAAGTTGCAAGATTCTATGGATAATGATCCCGTATTAAACATGGATTGCATGGTCCAGTATTATCTTTTCCATGATCTTCTGCTACTAGAAAATCAATTGCCTTGGTTTGTTCTCGAGTCTCTATATAACCTTATCTGCTACAAAAAAGTCCCCCTCAATAAGCTTGTGCTCAACTTCTTCAGCAGACTATCGTCAATGGATCATTATTGCAAGGTGCTGATCGAAGATGCTTCCCAGGTGTTCAGTAAGCTTGATAGTGACACATTTGTTAGTGATTTTCACTATGGCGGGCTCTGTGCTGCAGTGAATCAATATTACAGAGTTAGATGGAACCAGTGGCTGGCCCGATTGAAGCGTGATTACTTATCTACTCCATGGAAAATCACTTCTTTGGTTGCAGCCTTCATCCTTCTGGTTCTCACCCTATTGCAGACAACATATACCATTCAGCAATACTATTCTCCTCCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

296

Amino Acids

34.78

Weight (kDa)

6.99

Isoelectric Point (pI)

57.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 41 - 206 2e-43 Plant protein of unknown function
DUF247 PF03140 214 - 279 4e-14 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 757
AccII CGCG 1 cut(s) 309
AccIII TCCGGA 1 cut(s) 144
AciI CCGC 1 cut(s) 705
AclWI GGATC 2 cut(s) 437, 624
AcsI RAATTY 2 cut(s) 229, 363
AcuI CTGAAG 1 cut(s) 580
AfiI CCNNNNNNNGG 1 cut(s) 757
AflII CTTAAG 1 cut(s) 241
AgsI TTSAA 5 cut(s) 56, 186, 262, 275, 769
AjnI CCWGG 1 cut(s) 651
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 4 cut(s) 85, 266, 580, 667
AluI AGCT 4 cut(s) 85, 266, 580, 667
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 2 cut(s) 142, 540
AlwI GGATC 2 cut(s) 437, 624
AlwNI CAGNNNCTG 1 cut(s) 757
Ama87I CYCGRG 1 cut(s) 530
Aor13HI TCCGGA 1 cut(s) 144
AoxI GGCC 1 cut(s) 759
ApeKI GCWGC 3 cut(s) 381, 716, 815
ApoI RAATTY 2 cut(s) 229, 363
Asp700I GAANNNNTTC 3 cut(s) 84, 353, 399
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 3 cut(s) 191, 469, 760
AsuHPI GGTGA 3 cut(s) 90, 194, 829
AvaI CYCGRG 1 cut(s) 530
AvaII GGWCC 2 cut(s) 191, 469
BanII GRGCYC 1 cut(s) 711
BarI GAAGNNNNNNTAC 2 cut(s) 761, 793
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 3 cut(s) 368, 703, 827
BccI CCATC 3 cut(s) 26, 371, 738
BciT130I CCWGG 1 cut(s) 653
BcoDI GTCTC 2 cut(s) 142, 540
BfaI CTAG 1 cut(s) 503
BfmI CTRYAG 1 cut(s) 717
BfrI CTTAAG 1 cut(s) 241
BisI GCNGC 3 cut(s) 382, 717, 816
BlsI GCNGC 3 cut(s) 383, 718, 817
Bme1390I CCNGG 1 cut(s) 653
Bme18I GGWCC 2 cut(s) 191, 469
BmeT110I CYCGRG 1 cut(s) 530
BmgT120I GGNCC 3 cut(s) 191, 469, 760
BmiI GGNNCC 2 cut(s) 193, 749
BmrFI CCNGG 1 cut(s) 653
BmsI GCATC 1 cut(s) 634
BoxI GACNNNNGTC 1 cut(s) 607
BsaBI GATNNNNATC 1 cut(s) 441
BsaJI CCNNGG 3 cut(s) 518, 651, 791
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 757
Bse1I ACTGG 2 cut(s) 472, 751
Bse8I GATNNNNATC 1 cut(s) 441
BseAI TCCGGA 1 cut(s) 144
BseBI CCWGG 1 cut(s) 653
BseDI CCNNGG 3 cut(s) 518, 651, 791
BseGI GGATG 1 cut(s) 822
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 1 cut(s) 757
BseNI ACTGG 2 cut(s) 472, 751
BseRI GAGGAG 1 cut(s) 870
BseXI GCAGC 3 cut(s) 368, 703, 827
Bsh1236I CGCG 1 cut(s) 309
BshFI GGCC 1 cut(s) 761
BsiHKAI GWGCWC 1 cut(s) 588
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 2 cut(s) 116, 551
BslI CCNNNNNNNGG 1 cut(s) 757
BsmAI GTCTC 2 cut(s) 142, 540
BsmFI GGGAC 2 cut(s) 116, 551
BsnI GGCC 1 cut(s) 761
BsoBI CYCGRG 1 cut(s) 530
Bsp1286I GDGCHC 2 cut(s) 588, 711
Bsp13I TCCGGA 1 cut(s) 144
Bsp143I GATC 5 cut(s) 337, 442, 490, 616, 636
Bsp19I CCATGG 1 cut(s) 791
BspACI CCGC 1 cut(s) 705
BspANI GGCC 1 cut(s) 761
BspEI TCCGGA 1 cut(s) 144
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 2 cut(s) 193, 749
BspMAI CTGCAG 1 cut(s) 721
BspPI GGATC 2 cut(s) 437, 624
BspTI CTTAAG 1 cut(s) 241
BsrI ACTGG 2 cut(s) 472, 751
BssECI CCNNGG 3 cut(s) 518, 651, 791
BssMI GATC 5 cut(s) 337, 442, 490, 616, 636
BssT1I CCWWGG 2 cut(s) 518, 791
Bst2UI CCWGG 1 cut(s) 653
Bst4CI ACNGT 4 cut(s) 16, 206, 219, 295
BstAFI CTTAAG 1 cut(s) 241
BstC8I GCNNGC 2 cut(s) 707, 759
BstDEI CTNAG 1 cut(s) 885
BstDSI CCRYGG 1 cut(s) 791
BstF5I GGATG 1 cut(s) 822
BstFNI CGCG 1 cut(s) 309
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 5 cut(s) 340, 445, 493, 619, 639
BstMAI GTCTC 2 cut(s) 142, 540
BstMBI GATC 5 cut(s) 337, 442, 490, 616, 636
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 1 cut(s) 653
BstPAI GACNNNNGTC 1 cut(s) 607
BstSCI CCNGG 1 cut(s) 651
BstSFI CTRYAG 1 cut(s) 717
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 3 cut(s) 368, 703, 827
BsuRI GGCC 1 cut(s) 761
BtgI CCRYGG 1 cut(s) 791
BtsCI GGATG 1 cut(s) 822
BtsI GCAGTG 2 cut(s) 97, 726
BtsIMutI CAGTG 4 cut(s) 97, 224, 726, 758
Cac8I GCNNGC 2 cut(s) 707, 759
CaiI CAGNNNCTG 1 cut(s) 757
CfoI GCGC 1 cut(s) 311
Cfr13I GGNCC 3 cut(s) 191, 469, 760
CviAII CATG 6 cut(s) 22, 73, 457, 466, 488, 792
CviJI RGCY 9 cut(s) 85, 266, 381, 580, 667, 709, 757, 761, 818
CviKI_1 RGCY 9 cut(s) 85, 266, 381, 580, 667, 709, 757, 761, 818
DdeI CTNAG 1 cut(s) 885
DpnI GATC 5 cut(s) 339, 444, 492, 618, 638
DpnII GATC 5 cut(s) 337, 442, 490, 616, 636
DraI TTTAAA 1 cut(s) 228
Eco130I CCWWGG 2 cut(s) 518, 791
Eco24I GRGCYC 1 cut(s) 711
Eco47I GGWCC 2 cut(s) 191, 469
Eco57I CTGAAG 1 cut(s) 580
Eco88I CYCGRG 1 cut(s) 530
EcoRII CCWGG 1 cut(s) 651
EcoT14I CCWWGG 2 cut(s) 518, 791
EcoT38I GRGCYC 1 cut(s) 711
ErhI CCWWGG 2 cut(s) 518, 791
FaeI CATG 6 cut(s) 25, 76, 460, 469, 491, 795
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 2 cut(s) 116, 551
FatI CATG 6 cut(s) 21, 72, 456, 465, 487, 791
FauI CCCGC 1 cut(s) 698
FauNDI CATATG 1 cut(s) 166
Fnu4HI GCNGC 3 cut(s) 382, 717, 816
FokI GGATG 1 cut(s) 809
FriOI GRGCYC 1 cut(s) 711
Fsp4HI GCNGC 3 cut(s) 382, 717, 816
FspBI CTAG 1 cut(s) 503
GlaI GCGC 1 cut(s) 310
GluI GCNGC 3 cut(s) 382, 717, 816
HaeIII GGCC 1 cut(s) 761
HapII CCGG 1 cut(s) 145
HhaI GCGC 1 cut(s) 311
Hin1II CATG 6 cut(s) 25, 76, 460, 469, 491, 795
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HindIII AAGCTT 4 cut(s) 83, 264, 578, 665
HinfI GANTC 8 cut(s) 95, 129, 271, 329, 349, 428, 533, 724
HpaII CCGG 1 cut(s) 145
HphI GGTGA 3 cut(s) 90, 194, 829
Hpy188I TCNGA 3 cut(s) 128, 191, 405
Hpy188III TCNNGA 3 cut(s) 145, 341, 530
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 829, 836
HpyCH4III ACNGT 4 cut(s) 16, 206, 219, 295
HpyCH4V TGCA 9 cut(s) 120, 170, 326, 424, 465, 627, 719, 815, 847
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 1 cut(s) 885
Hsp92II CATG 6 cut(s) 25, 76, 460, 469, 491, 795
HspAI GCGC 1 cut(s) 309
Kpn2I TCCGGA 1 cut(s) 144
Kzo9I GATC 5 cut(s) 337, 442, 490, 616, 636
Lsp1109I GCAGC 3 cut(s) 368, 703, 827
LweI GCATC 1 cut(s) 634
MaeI CTAG 1 cut(s) 503
MaeIII GTNAC 1 cut(s) 674
MalI GATC 5 cut(s) 339, 444, 492, 618, 638
MboI GATC 5 cut(s) 337, 442, 490, 616, 636
MboII GAAGA 5 cut(s) 38, 262, 485, 586, 653
MfeI CAATTG 2 cut(s) 333, 512
MhlI GDGCHC 2 cut(s) 588, 711
MluCI AATT 7 cut(s) 8, 137, 229, 333, 353, 363, 512
MlyI GAGTC 2 cut(s) 138, 542
MnlI CCTC 3 cut(s) 154, 581, 891
MroI TCCGGA 1 cut(s) 144
MroXI GAANNNNTTC 3 cut(s) 84, 353, 399
MseI TTAA 4 cut(s) 11, 227, 242, 452
MslI CAYNNNNRTG 1 cut(s) 207
MspCI CTTAAG 1 cut(s) 241
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 653
MunI CAATTG 2 cut(s) 333, 512
MvaI CCWGG 1 cut(s) 653
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 323
NcoI CCATGG 1 cut(s) 791
NdeI CATATG 1 cut(s) 166
NdeII GATC 5 cut(s) 337, 442, 490, 616, 636
NlaIII CATG 6 cut(s) 25, 76, 460, 469, 491, 795
NlaIV GGNNCC 2 cut(s) 193, 749
NmuCI GTSAC 1 cut(s) 674
PaeR7I CTCGAG 1 cut(s) 530
PdmI GAANNNNTTC 3 cut(s) 84, 353, 399
PfeI GAWTC 6 cut(s) 95, 271, 329, 349, 428, 724
PflMI CCANNNNNTGG 1 cut(s) 757
PkrI GCNGC 3 cut(s) 383, 718, 817
PleI GAGTC 2 cut(s) 137, 541
PpsI GAGTC 2 cut(s) 137, 541
PshAI GACNNNNGTC 1 cut(s) 607
Psp6I CCWGG 1 cut(s) 651
PspGI CCWGG 1 cut(s) 651
PspN4I GGNNCC 2 cut(s) 193, 749
PspPI GGNCC 3 cut(s) 191, 469, 760
PstI CTGCAG 1 cut(s) 721
PstNI CAGNNNCTG 1 cut(s) 757
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 4 cut(s) 11, 227, 242, 452
SatI GCNGC 3 cut(s) 382, 717, 816
Sau3AI GATC 5 cut(s) 337, 442, 490, 616, 636
Sau96I GGNCC 3 cut(s) 191, 469, 760
SchI GAGTC 2 cut(s) 138, 542
ScrFI CCNGG 1 cut(s) 653
SduI GDGCHC 2 cut(s) 588, 711
SetI ASST 8 cut(s) 87, 268, 280, 549, 582, 633, 657, 669
SfaNI GCATC 1 cut(s) 634
SfcI CTRYAG 1 cut(s) 717
Sfr274I CTCGAG 1 cut(s) 530
SinI GGWCC 2 cut(s) 191, 469
SlaI CTCGAG 1 cut(s) 530
SmiI ATTTAAAT 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 2 cut(s) 241, 530
SmoI CTYRAG 2 cut(s) 241, 530
Sse9I AATT 7 cut(s) 8, 137, 229, 333, 353, 363, 512
SsiI CCGC 1 cut(s) 705
SspI AATATT 4 cut(s) 46, 178, 289, 731
SspMI CTAG 1 cut(s) 503
StyD4I CCNGG 1 cut(s) 651
StyI CCWWGG 2 cut(s) 518, 791
SwaI ATTTAAAT 1 cut(s) 228
TaaI ACNGT 4 cut(s) 16, 206, 219, 295
TaqI TCGA 2 cut(s) 531, 639
TasI AATT 7 cut(s) 8, 137, 229, 333, 353, 363, 512
TfiI GAWTC 6 cut(s) 95, 271, 329, 349, 428, 724
Tru1I TTAA 4 cut(s) 11, 227, 242, 452
Tru9I TTAA 4 cut(s) 11, 227, 242, 452
TscAI CASTG 4 cut(s) 97, 224, 726, 758
TseFI GTSAC 1 cut(s) 674
TseI GCWGC 3 cut(s) 381, 716, 815
Tsp45I GTSAC 1 cut(s) 674
TspDTI ATGAA 4 cut(s) 89, 188, 346, 811
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 4 cut(s) 97, 224, 726, 758
Van91I CCANNNNNTGG 1 cut(s) 757
Vha464I CTTAAG 1 cut(s) 241
VpaK11BI GGWCC 2 cut(s) 191, 469
XapI RAATTY 2 cut(s) 229, 363
XhoI CTCGAG 1 cut(s) 530
XmnI GAANNNNTTC 3 cut(s) 84, 353, 399
XspI CTAG 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.