RchiOBHm_Chr7g0185641

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000188
Physical Location & Seq
Reverse (-)
5720332 .. 5721694
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16568

Sequence Viewer

Length: 990 bp
ATGGCAAACGGTATAGAGAGCAGTTGTACAGATATTGTTAAAGAAGATCATGGGTTCAGAGTCATTCTTGAAGGATTGGAGAACACCATGACAGCAAAGTTTCGCAAGAACTCACTCTGGTCTGGTAAGAGCTGCATTTTCAGAGTTCCCGAAGTGCTTCGGAGGCATAAACCAGAGGCATATAGACCTGATGTTGTGTCAATCGGTCCCTTTCACCGAGGCGGTAAAAAATTTCGACCCATAGAAGATGTGAAACGATGGTACTTACAGAACCTTCTCTCTCGCATGAATATAAGCTTGAAAACCTTAATGGAAGGCATTGATAATATTATTGAGTTTGAGAAACGCGCCCGTGAATTTTATTCAGAACCCCCTCATCTTAGCCGGGATGACTTCATAGAAATGCTGATACTTGATGGTTGCTTTATAGTAGAACTATTTTGGAAGTATTTTTGTTGGTCGTTTATGCATTTCTTGAAGACAGATCTAGTTCCAGCTGAAGAACTCAATATTGATAATGACCCTATAATCAACAAGGACTGCATGATCCAATATATTTACCATGACCTTTTGCTACTAGAAAATCAGGTACCTTGGTTTGTTCTCGAGTGTTTATATAACCTTACTCTGGACAAATACTTCCCCTTTCCTCTTAAGAGAATTGTGCTTGCTTCCTTTTGCAAGCAAGAATCATTGTCTTGTATGTTGCAGTTCTATCTTAGTCACCGTCAGGATGATGATGATCACGATTATGATGCTGTTAGTGGTGATGCTGACGACTTTGATGGTGAGATTTTGCACATACTTGATCTAGTAAGAACTGCCACAACTTTCCGATTTAAGAATAAACCAATTCCCGGCTCAAAGGTAAAACTGTCTCCTGCAACAACTCTCTCAGAATCGGGTATTAAATTTAGAAAGAGCACTGATTCTGGCATAATTCCTTCATTCCTCCACGATTTTCTTTCTTGGCTTGGAGGATTCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

38.35

Weight (kDa)

5.72

Isoelectric Point (pI)

62.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 46 - 309 1.1e-52 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 589
AccB1I GGYRCC 1 cut(s) 589
AccII CGCG 1 cut(s) 348
AciI CCGC 1 cut(s) 222
AclWI GGATC 1 cut(s) 541
AcsI RAATTY 3 cut(s) 230, 356, 911
AcuI CTGAAG 1 cut(s) 519
AfaI GTAC 3 cut(s) 28, 263, 591
AfiI CCNNNNNNNGG 2 cut(s) 628, 857
AflII CTTAAG 1 cut(s) 653
AgsI TTSAA 3 cut(s) 71, 301, 478
AluBI AGCT 3 cut(s) 132, 297, 497
AluI AGCT 3 cut(s) 132, 297, 497
Alw21I GWGCWC 1 cut(s) 926
Alw26I GTCTC 1 cut(s) 882
AlwI GGATC 1 cut(s) 541
Ama87I CYCGRG 1 cut(s) 605
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 3 cut(s) 230, 356, 911
Asp700I GAANNNNTTC 1 cut(s) 156
Asp718I GGTACC 1 cut(s) 589
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 206
AsuC2I CCSGG 2 cut(s) 386, 858
AsuHPI GGTGA 4 cut(s) 206, 716, 779, 800
AvaI CYCGRG 1 cut(s) 605
AvaII GGWCC 1 cut(s) 206
BaeI ACNNNNGTAYC 2 cut(s) 581, 614
BanI GGYRCC 1 cut(s) 589
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 926
BbvI GCAGC 1 cut(s) 119
BccI CCATC 3 cut(s) 252, 410, 779
BcgI CGANNNNNNTGC 2 cut(s) 737, 771
BclI TGATCA 1 cut(s) 742
BcnI CCSGG 2 cut(s) 386, 858
BcoDI GTCTC 1 cut(s) 882
BfaI CTAG 3 cut(s) 488, 578, 812
BfrI CTTAAG 1 cut(s) 653
BglII AGATCT 1 cut(s) 484
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
Bme1390I CCNGG 2 cut(s) 386, 858
Bme18I GGWCC 1 cut(s) 206
BmeT110I CYCGRG 1 cut(s) 605
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 2 cut(s) 208, 591
BmrFI CCNGG 2 cut(s) 386, 858
BmsI GCATC 2 cut(s) 745, 760
BpiI GAAGAC 1 cut(s) 485
BpuMI CCSGG 2 cut(s) 386, 858
BsaBI GATNNNNATC 1 cut(s) 741
BsaJI CCNNGG 2 cut(s) 217, 593
Bsc4I CCNNNNNNNGG 2 cut(s) 628, 857
Bse8I GATNNNNATC 1 cut(s) 741
BseDI CCNNGG 2 cut(s) 217, 593
BseGI GGATG 2 cut(s) 394, 739
BseJI GATNNNNATC 1 cut(s) 741
BseLI CCNNNNNNNGG 2 cut(s) 628, 857
BseMII CTCAG 1 cut(s) 909
BseXI GCAGC 1 cut(s) 119
Bsh1236I CGCG 1 cut(s) 348
BshNI GGYRCC 1 cut(s) 589
BsiHKAI GWGCWC 1 cut(s) 926
BsiHKCI CYCGRG 1 cut(s) 605
BsiSI CCGG 2 cut(s) 385, 858
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 2 cut(s) 628, 857
BsmAI GTCTC 1 cut(s) 882
BsmFI GGGAC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 605
Bsp1286I GDGCHC 1 cut(s) 926
Bsp1407I TGTACA 1 cut(s) 26
Bsp143I GATC 5 cut(s) 46, 484, 546, 742, 808
BspACI CCGC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 908
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 2 cut(s) 208, 591
BspPI GGATC 1 cut(s) 541
BspT107I GGYRCC 1 cut(s) 589
BspTI CTTAAG 1 cut(s) 653
BsrGI TGTACA 1 cut(s) 26
BssECI CCNNGG 2 cut(s) 217, 593
BssMI GATC 5 cut(s) 46, 484, 546, 742, 808
BssT1I CCWWGG 1 cut(s) 593
Bst4CI ACNGT 3 cut(s) 11, 728, 876
BstAFI CTTAAG 1 cut(s) 653
BstAUI TGTACA 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 669, 683
BstDEI CTNAG 4 cut(s) 380, 719, 895, 987
BstF5I GGATG 2 cut(s) 394, 739
BstFNI CGCG 1 cut(s) 348
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 5 cut(s) 49, 487, 549, 745, 811
BstMAI GTCTC 1 cut(s) 882
BstMBI GATC 5 cut(s) 46, 484, 546, 742, 808
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstSCI CCNGG 2 cut(s) 384, 856
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BtsCI GGATG 2 cut(s) 394, 739
BtsIMutI CAGTG 1 cut(s) 924
Cac8I GCNNGC 2 cut(s) 669, 683
CfoI GCGC 1 cut(s) 350
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 3 cut(s) 27, 262, 590
CviAII CATG 5 cut(s) 50, 88, 286, 544, 563
CviJI RGCY 6 cut(s) 132, 297, 384, 497, 861, 973
CviKI_1 RGCY 6 cut(s) 132, 297, 384, 497, 861, 973
CviQI GTAC 3 cut(s) 27, 262, 590
DdeI CTNAG 4 cut(s) 380, 719, 895, 987
DpnI GATC 5 cut(s) 48, 486, 548, 744, 810
DpnII GATC 5 cut(s) 46, 484, 546, 742, 808
Eco130I CCWWGG 1 cut(s) 593
Eco47I GGWCC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 519
Eco88I CYCGRG 1 cut(s) 605
EcoT14I CCWWGG 1 cut(s) 593
EcoT22I ATGCAT 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 593
FaeI CATG 5 cut(s) 53, 91, 289, 547, 566
FaqI GGGAC 1 cut(s) 192
FatI CATG 5 cut(s) 49, 87, 285, 543, 562
FbaI TGATCA 1 cut(s) 742
Fnu4HI GCNGC 1 cut(s) 133
FokI GGATG 2 cut(s) 401, 746
Fsp4HI GCNGC 1 cut(s) 133
FspBI CTAG 3 cut(s) 488, 578, 812
GlaI GCGC 1 cut(s) 349
GluI GCNGC 1 cut(s) 133
HapII CCGG 2 cut(s) 385, 858
HhaI GCGC 1 cut(s) 350
Hin1II CATG 5 cut(s) 53, 91, 289, 547, 566
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HindIII AAGCTT 1 cut(s) 295
HinfI GANTC 5 cut(s) 60, 689, 899, 929, 981
HpaII CCGG 2 cut(s) 385, 858
HphI GGTGA 4 cut(s) 206, 716, 779, 800
Hpy188I TCNGA 6 cut(s) 59, 143, 162, 367, 836, 898
Hpy188III TCNNGA 7 cut(s) 68, 149, 475, 605, 629, 731, 746
HpyAV CCTTC 4 cut(s) 65, 284, 308, 954
HpyCH4III ACNGT 3 cut(s) 11, 728, 876
HpyCH4V TGCA 7 cut(s) 135, 469, 543, 681, 709, 799, 884
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 4 cut(s) 380, 719, 895, 987
Hsp92II CATG 5 cut(s) 53, 91, 289, 547, 566
HspAI GCGC 1 cut(s) 348
KpnI GGTACC 1 cut(s) 593
Ksp22I TGATCA 1 cut(s) 742
Kzo9I GATC 5 cut(s) 46, 484, 546, 742, 808
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 2 cut(s) 745, 760
MaeI CTAG 3 cut(s) 488, 578, 812
MaeIII GTNAC 1 cut(s) 722
MalI GATC 5 cut(s) 48, 486, 548, 744, 810
MboI GATC 5 cut(s) 46, 484, 546, 742, 808
MboII GAAGA 4 cut(s) 56, 257, 490, 512
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 1 cut(s) 926
MluCI AATT 6 cut(s) 230, 356, 660, 852, 911, 939
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 7 cut(s) 156, 169, 212, 384, 660, 962, 971
Mph1103I ATGCAT 1 cut(s) 471
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 5 cut(s) 39, 308, 654, 840, 909
MslI CAYNNNNRTG 2 cut(s) 401, 750
MspA1I CMGCKG 1 cut(s) 497
MspCI CTTAAG 1 cut(s) 653
MspI CCGG 2 cut(s) 385, 858
MspR9I CCNGG 2 cut(s) 386, 858
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 1 cut(s) 163
NciI CCSGG 2 cut(s) 386, 858
NdeII GATC 5 cut(s) 46, 484, 546, 742, 808
NlaIII CATG 5 cut(s) 53, 91, 289, 547, 566
NlaIV GGNNCC 2 cut(s) 208, 591
NmuCI GTSAC 1 cut(s) 722
NsiI ATGCAT 1 cut(s) 471
PaeR7I CTCGAG 1 cut(s) 605
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 4 cut(s) 689, 899, 929, 981
PkrI GCNGC 1 cut(s) 134
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 208, 591
PspPI GGNCC 1 cut(s) 206
PsuI RGATCY 1 cut(s) 484
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 3 cut(s) 28, 263, 591
RsaNI GTAC 3 cut(s) 27, 262, 590
RseI CAYNNNNRTG 2 cut(s) 401, 750
SaqAI TTAA 5 cut(s) 39, 308, 654, 840, 909
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 5 cut(s) 46, 484, 546, 742, 808
Sau96I GGNCC 1 cut(s) 206
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 2 cut(s) 386, 858
SduI GDGCHC 1 cut(s) 926
SfaNI GCATC 2 cut(s) 745, 760
Sfr274I CTCGAG 1 cut(s) 605
SinI GGWCC 1 cut(s) 206
SlaI CTCGAG 1 cut(s) 605
SmiMI CAYNNNNRTG 2 cut(s) 401, 750
SmlI CTYRAG 2 cut(s) 605, 653
SmoI CTYRAG 2 cut(s) 605, 653
Sse9I AATT 6 cut(s) 230, 356, 660, 852, 911, 939
SsiI CCGC 1 cut(s) 222
SspI AATATT 2 cut(s) 328, 511
SspMI CTAG 3 cut(s) 488, 578, 812
StyD4I CCNGG 2 cut(s) 384, 856
StyI CCWWGG 1 cut(s) 593
TaaI ACNGT 3 cut(s) 11, 728, 876
TaqI TCGA 2 cut(s) 235, 606
TaqII GACCGA 1 cut(s) 194
TasI AATT 6 cut(s) 230, 356, 660, 852, 911, 939
TatI WGTACW 1 cut(s) 26
TfiI GAWTC 4 cut(s) 689, 899, 929, 981
Tru1I TTAA 5 cut(s) 39, 308, 654, 840, 909
Tru9I TTAA 5 cut(s) 39, 308, 654, 840, 909
TscAI CASTG 1 cut(s) 931
TseFI GTSAC 1 cut(s) 722
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 1 cut(s) 722
TspDTI ATGAA 3 cut(s) 302, 385, 936
TspRI CASTG 1 cut(s) 931
Vha464I CTTAAG 1 cut(s) 653
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 3 cut(s) 230, 356, 911
XhoI CTCGAG 1 cut(s) 605
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 3 cut(s) 488, 578, 812
Zsp2I ATGCAT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.