RchiOBHm_Chr7g0185611

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000188
Physical Location & Seq
Reverse (-)
5718484 .. 5718786
303 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16565

Sequence Viewer

Length: 303 bp
ATGGATTTTCTTGGTACGAAAGACATAATCGGTAACCGGTTTAGTTCCGAAAATGCTTCCCAACTCTTCAACAAGCTTTGCGACAATACAACTCTCAACAGTTGCTATTATGGGGAACTGTGCACTAAAGTGATCGAGTATAACAACGTTTCATGGAACAGGTGGCTAGAAAACTTGAAGCGCGATTACTTATCTAACCCATGGAAGATTACTTCTTTGGTTGCAGCCTTTACTCTTCTGGCTCTCACCTTATTGCAGACCACATATACCATTCAGCAATACTACTATTCTCCTCGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.74

Weight (kDa)

7.65

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 2 - 82 4e-19 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 183
AclI AACGTT 1 cut(s) 147
AfaI GTAC 1 cut(s) 16
AgeI ACCGGT 1 cut(s) 36
AgsI TTSAA 2 cut(s) 70, 178
AleI CACNNNNGTG 1 cut(s) 128
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw21I GWGCWC 1 cut(s) 125
Alw44I GTGCAC 1 cut(s) 121
ApaLI GTGCAC 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 224
AsiGI ACCGGT 1 cut(s) 36
AspLEI GCGC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 238
BaeGI GKGCMC 1 cut(s) 125
BarI GAAGNNNNNNTAC 2 cut(s) 170, 202
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 236
BfaI CTAG 1 cut(s) 167
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 36
Bse118I RCCGGY 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 282
BseSI GKGCMC 1 cut(s) 125
BseXI GCAGC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 183
BshTI ACCGGT 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 132
Bsp19I CCATGG 1 cut(s) 200
BspFNI CGCG 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 36
BssAI RCCGGY 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 101, 120
Bst6I CTCTTC 2 cut(s) 71, 240
BstDSI CCRYGG 1 cut(s) 200
BstEII GGTNACC 1 cut(s) 32
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstPI GGTNACC 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 125
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 236
BtgI CCRYGG 1 cut(s) 200
CfoI GCGC 1 cut(s) 183
Cfr10I RCCGGY 1 cut(s) 36
Csp6I GTAC 1 cut(s) 15
CspAI ACCGGT 1 cut(s) 36
CviAII CATG 2 cut(s) 153, 201
CviJI RGCY 4 cut(s) 76, 166, 227, 242
CviKI_1 RGCY 4 cut(s) 76, 166, 227, 242
CviQI GTAC 1 cut(s) 15
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
Eam1104I CTCTTC 2 cut(s) 71, 240
EarI CTCTTC 2 cut(s) 71, 240
Eco130I CCWWGG 1 cut(s) 200
Eco91I GGTNACC 1 cut(s) 32
EcoO65I GGTNACC 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 2 cut(s) 156, 204
FaiI YATR 7 cut(s) 26, 111, 141, 154, 202, 265, 267
FatI CATG 2 cut(s) 152, 200
Fnu4HI GCNGC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 1 cut(s) 167
GlaI GCGC 1 cut(s) 182
GluI GCNGC 1 cut(s) 225
HapII CCGG 1 cut(s) 37
HhaI GCGC 1 cut(s) 183
Hin1II CATG 2 cut(s) 156, 204
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 74
HpaII CCGG 1 cut(s) 37
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 1 cut(s) 49
Hpy8I GTNNAC 1 cut(s) 123
HpyCH4III ACNGT 2 cut(s) 101, 120
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 123, 224, 256
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 2 cut(s) 156, 204
HspAI GCGC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 132
LpnPI CCDG 3 cut(s) 50, 145, 224
Lsp1109I GCAGC 1 cut(s) 236
MaeI CTAG 1 cut(s) 167
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 32
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 3 cut(s) 58, 217, 227
MhlI GDGCHC 1 cut(s) 125
MnlI CCTC 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 1 cut(s) 37
MvnI CGCG 1 cut(s) 183
NcoI CCATGG 1 cut(s) 200
NdeII GATC 1 cut(s) 132
NlaIII CATG 2 cut(s) 156, 204
OliI CACNNNNGTG 1 cut(s) 128
PinAI ACCGGT 1 cut(s) 36
PkrI GCNGC 1 cut(s) 226
Psp1406I AACGTT 1 cut(s) 147
PspEI GGTNACC 1 cut(s) 32
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 128
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 1 cut(s) 132
SduI GDGCHC 1 cut(s) 125
SetI ASST 4 cut(s) 78, 150, 164, 251
SmiMI CAYNNNNRTG 1 cut(s) 128
SspMI CTAG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 2 cut(s) 101, 120
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 135
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 141
VneI GTGCAC 1 cut(s) 121
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.