RchiOBHm_Chr7g0185581

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000188
Physical Location & Seq
Reverse (-)
5700473 .. 5700811
339 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16563

Sequence Viewer

Length: 339 bp
ATGAATTACCACATCAGCTCCAGCAAGGATATGGATTTCCTTTGCAACAAAGGAATAATGGTTAATTGGTTGAACTCTGAAGATGCTTCCCAATTTTTCAACAAGCTTTACAATGACACTGTTCTCAAGCAATTCTACTATGGTGGACTCTGTGCTGAAGTGAATAGATATTACAAAGTTATATGGAACAAGTGGCTGGAAAAATTGAAGAGTGATTATTTATGTAATCCATGGAAAATTACTTCTTTGGTTGCAGCCTTCATCCTTCTGGTTCTCTCACCCTATTGCAAACCACATACACCATTCTGGAATACTATTATCCTTGATCATAGTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

13.27

Weight (kDa)

7.65

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 92 7e-24 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 99, 177
AgsI TTSAA 3 cut(s) 73, 100, 208
AluBI AGCT 2 cut(s) 18, 106
AluI AGCT 2 cut(s) 18, 106
ApeKI GCWGC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 270
BbvI GCAGC 1 cut(s) 266
BclI TGATCA 1 cut(s) 325
BfaI CTAG 1 cut(s) 337
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
BmsI GCATC 1 cut(s) 73
BpmI CTGGAG 1 cut(s) 4
BpuEI CTTGAG 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 230
BsaXI ACNNNNNCTCC 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 230
BseGI GGATG 1 cut(s) 261
BseXI GCAGC 1 cut(s) 266
Bsp143I GATC 1 cut(s) 325
Bsp19I CCATGG 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 203
BstDSI CCRYGG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 261
BstKTI GATC 1 cut(s) 328
BstMBI GATC 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 266
BtgI CCRYGG 1 cut(s) 230
BtsCI GGATG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 117
CviAII CATG 1 cut(s) 231
CviJI RGCY 4 cut(s) 18, 106, 196, 257
CviKI_1 RGCY 4 cut(s) 18, 106, 196, 257
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco130I CCWWGG 1 cut(s) 230
Eco57I CTGAAG 2 cut(s) 99, 177
EcoT14I CCWWGG 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 1 cut(s) 234
FaiI YATR 8 cut(s) 32, 141, 182, 184, 223, 232, 297, 330
FatI CATG 1 cut(s) 230
FbaI TGATCA 1 cut(s) 325
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 1 cut(s) 337
GluI GCNGC 1 cut(s) 255
GsuI CTGGAG 1 cut(s) 4
Hin1II CATG 1 cut(s) 234
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 1 cut(s) 147
HphI GGTGA 1 cut(s) 270
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 307
Hpy8I GTNNAC 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 268, 275
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 3 cut(s) 45, 254, 288
Hsp92II CATG 1 cut(s) 234
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 1 cut(s) 325
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 4 cut(s) 34, 182, 254, 292
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 1 cut(s) 73
MaeI CTAG 1 cut(s) 337
MaeIII GTNAC 1 cut(s) 332
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MboII GAAGA 2 cut(s) 92, 220
MluCI AATT 6 cut(s) 4, 64, 92, 131, 203, 237
MlyI GAGTC 1 cut(s) 141
MseI TTAA 1 cut(s) 63
NcoI CCATGG 1 cut(s) 230
NdeII GATC 1 cut(s) 325
NlaIII CATG 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 1 cut(s) 325
SchI GAGTC 1 cut(s) 141
SetI ASST 2 cut(s) 20, 108
SfaNI GCATC 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 6 cut(s) 4, 64, 92, 131, 203, 237
SspMI CTAG 1 cut(s) 337
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 121
TasI AATT 6 cut(s) 4, 64, 92, 131, 203, 237
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 2 cut(s) 17, 250
TspRI CASTG 1 cut(s) 124
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XspI CTAG 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.