Rh4DG160000

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000188
Physical Location & Seq
Reverse (-)
31816613 .. 31826657
10045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG160000.1

Sequence Viewer

Length: 498 bp
ATGGACAACCTCATCGGTTCTAGCAAGGACATGGAGTTTCTCTGTGAGAAAAAAATAATAGATAACTGGCTCAGCGCTGAGGATGCTTCAAAGTTCTTCGTCAAGCTTTACTATGACACTGTGCTCAATAAGTTCTACTATGGTGGACTCTGCTCTAAACTCAATAAACACTATGATCACAAATGGAAAACGTGGCAAGAAAAGTTCAAGCGCACATACTGTTCTGATCCATGGAAATTTATATCTTTGACGGCAGCCTTTATCCTTCTTCTTCTCACTCTGTTGCAGACCATATATACTGTCGCGCAAACTTGCAATACTTTGTCAAGATTTGCAGTTGATCTCATTTGGCTTTGTCAAGCTATGAGTGAAATAGTTTTGGCATTCAGTCAGTGGGTTGATCCATTGCTCTTAAGAAGGGACCTGTTCAAATCTCAGTTTCAGTGGGTTGAAGGAAAGGAGGTTGTGTATATGGATGGAAAATGTGATGCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

165

Amino Acids

19.49

Weight (kDa)

8.15

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 92 3.3e-24 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 305
AclWI GGATC 2 cut(s) 221, 395
AcsI RAATTY 1 cut(s) 236
AfeI AGCGCT 1 cut(s) 76
AflII CTTAAG 1 cut(s) 412
AgsI TTSAA 4 cut(s) 90, 208, 430, 452
AluBI AGCT 2 cut(s) 106, 362
AluI AGCT 2 cut(s) 106, 362
Alw21I GWGCWC 1 cut(s) 126
AlwI GGATC 2 cut(s) 221, 395
Aor51HI AGCGCT 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 1 cut(s) 236
AspLEI GCGC 3 cut(s) 77, 213, 307
AspS9I GGNCC 1 cut(s) 421
AvaII GGWCC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 126
BbvCI CCTCAGC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 266
BccI CCATC 1 cut(s) 470
BceAI ACGGC 1 cut(s) 267
BclI TGATCA 1 cut(s) 175
BfaI CTAG 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 78
BfrI CTTAAG 1 cut(s) 412
BisI GCNGC 1 cut(s) 255
BlpI GCTNAGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 421
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 1 cut(s) 422
BmsI GCATC 2 cut(s) 73, 478
Bpu10I CCTNAGC 1 cut(s) 78
Bpu1102I GCTNAGC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bse1I ACTGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 404
BseDI CCNNGG 1 cut(s) 230
BseGI GGATG 2 cut(s) 88, 481
BseMI GCAATG 1 cut(s) 404
BseMII CTCAG 3 cut(s) 69, 85, 449
BseNI ACTGG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 266
Bsh1236I CGCG 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 126
BslFI GGGAC 1 cut(s) 434
BsmFI GGGAC 1 cut(s) 434
BsmI GAATGC 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 4 cut(s) 175, 226, 340, 400
Bsp1720I GCTNAGC 1 cut(s) 71
Bsp19I CCATGG 1 cut(s) 230
BspCNI CTCAG 3 cut(s) 70, 84, 448
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 1 cut(s) 422
BspPI GGATC 2 cut(s) 221, 395
BspTI CTTAAG 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 404
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 4 cut(s) 175, 226, 340, 400
BssT1I CCWWGG 1 cut(s) 230
Bst4CI ACNGT 3 cut(s) 121, 221, 301
BstAFI CTTAAG 1 cut(s) 412
BstDEI CTNAG 3 cut(s) 71, 78, 435
BstDSI CCRYGG 1 cut(s) 230
BstF5I GGATG 2 cut(s) 88, 481
BstFNI CGCG 1 cut(s) 305
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 3 cut(s) 77, 213, 307
BstKTI GATC 4 cut(s) 178, 229, 343, 403
BstMBI GATC 4 cut(s) 175, 226, 340, 400
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstUI CGCG 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 266
BtgI CCRYGG 1 cut(s) 230
BtsCI GGATG 2 cut(s) 88, 481
BtsIMutI CAGTG 3 cut(s) 117, 398, 449
CfoI GCGC 3 cut(s) 77, 213, 307
Cfr13I GGNCC 1 cut(s) 421
CviAII CATG 2 cut(s) 31, 231
CviJI RGCY 5 cut(s) 70, 106, 257, 352, 362
CviKI_1 RGCY 5 cut(s) 70, 106, 257, 352, 362
DdeI CTNAG 3 cut(s) 71, 78, 435
DpnI GATC 4 cut(s) 177, 228, 342, 402
DpnII GATC 4 cut(s) 175, 226, 340, 400
Eco130I CCWWGG 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 421
Eco47III AGCGCT 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 2 cut(s) 34, 234
FaqI GGGAC 1 cut(s) 434
FatI CATG 2 cut(s) 30, 230
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 2 cut(s) 95, 488
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 1 cut(s) 21
GlaI GCGC 3 cut(s) 76, 212, 306
GluI GCNGC 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 78
HhaI GCGC 3 cut(s) 77, 213, 307
Hin1II CATG 2 cut(s) 34, 234
Hin6I GCGC 3 cut(s) 75, 211, 305
HinP1I GCGC 3 cut(s) 75, 211, 305
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 1 cut(s) 327
Hpy8I GTNNAC 1 cut(s) 146
HpyAV CCTTC 3 cut(s) 275, 411, 446
HpyCH4III ACNGT 3 cut(s) 121, 221, 301
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 4 cut(s) 286, 315, 335, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 3 cut(s) 71, 78, 435
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 2 cut(s) 34, 234
HspAI GCGC 3 cut(s) 75, 211, 305
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 4 cut(s) 175, 226, 340, 400
LpnPI CCDG 2 cut(s) 52, 437
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 2 cut(s) 73, 478
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 191
MalI GATC 4 cut(s) 177, 228, 342, 402
MboI GATC 4 cut(s) 175, 226, 340, 400
MboII GAAGA 3 cut(s) 88, 260, 263
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 1 cut(s) 236
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 3 cut(s) 20, 73, 454
MseI TTAA 1 cut(s) 413
MspCI CTTAAG 1 cut(s) 412
Mva1269I GAATGC 1 cut(s) 383
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 83
NcoI CCATGG 1 cut(s) 230
NdeII GATC 4 cut(s) 175, 226, 340, 400
NlaIII CATG 2 cut(s) 34, 234
NlaIV GGNNCC 1 cut(s) 422
PctI GAATGC 1 cut(s) 383
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
PpuMI RGGWCCY 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 422
PspPI GGNCC 1 cut(s) 421
PspPPI RGGWCCY 1 cut(s) 421
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 4 cut(s) 175, 226, 340, 400
Sau96I GGNCC 1 cut(s) 421
SchI GAGTC 1 cut(s) 141
SduI GDGCHC 1 cut(s) 126
SetI ASST 6 cut(s) 12, 108, 194, 364, 426, 465
SfaNI GCATC 2 cut(s) 73, 478
SinI GGWCC 1 cut(s) 421
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
Sse9I AATT 1 cut(s) 236
SspMI CTAG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 3 cut(s) 121, 221, 301
TaiI ACGT 1 cut(s) 194
TasI AATT 1 cut(s) 236
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TscAI CASTG 3 cut(s) 124, 398, 449
TseI GCWGC 1 cut(s) 254
TspRI CASTG 3 cut(s) 124, 398, 449
Vha464I CTTAAG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 421
XapI RAATTY 1 cut(s) 236
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.