MD09G1014000.v1.1

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000188
Physical Location & Seq
Reverse (-)
897669 .. 899006
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1014000.v1.1.491

Sequence Viewer

Length: 1338 bp
ATGGAAAGTAAGAGAGAAATTAACGAAGTTGATGATAGTATTTCAGTAGTTGTAGACAATGATGGTATTGTAGATGAATTGAGAAACCGCATCGAACGAAGGCTTCTCAGATATTCACCAATGCCAGCATTCCGCTCCATCTTCAAAGTTCCCGAGAAGATACGGAGCAAAAAAGAGCCAGCATACAAACCTGACATCGTCTCAATCGGACCCTATCACAGTGGCCCCCATGACGATTCTGGCAAAAAATTCCGACTCATGGAAAATGTGAAGCACTGGTACTTGCACTGCCTTCTCTCACGTGTTAACATAACTTTGGCAGGCTTGATCAAAGAAGTCATGGATTTAGAAGAGCTTGCTCGCGACTGTTACGCAGATCCAATCGATCCCAATATAAACTTCGTTGACATGATGGTACTCGACGGATGCTTCCTAATCGAACTATTTCTAAAAGGACCCGATTACAACGACATAAACGACCCTGTTTACAGTGTGTCCTGCACGCGGGATTATCTTTGCCATGACCTTATCCTGCTAGAAAATCAGCTTCCATGGTTTGTTCTCCAGCGGTTATACTATTTAACTGCCGTGGAGAATTTTCCTAGCGAAGAAAATGCCTCCTCCTCCCTCATCCACCTTGTCCTAGGATTCTTCGAACGCATCATCCCGAAGGACCCGAACAAGAGTATTCCAAACCCGAAACGCCCTGGCAAAATCCTGCACATACTCGATCTCATAAGAGCCGTGATCGTTGCCCCGTTTGAAGTCCCCAAAGAGCAGAGGAAGGAGAAGCAGACAATTCCAAACGTGACAACTCTGTCCAAAGCCGGCATTAGATTCCAAAAAGGTTCCAATGCCTGCATACTGGACATAAATTTCAAAAACGGGGTGTTCACTATTCCACCACTACCATTCGCCGAGACGACAGAGCCACTCTTCAGGAACCTCATCGCCTTCGAGCAATGCCACTGCAAACGCACCCACAAGATAACGTCTTACGCCGTCCTGATGGAGAGTTTCATTGATTCGAGCAAGGACATCGACCTTCTTTGTGAAAGGCAAATACTGGGGAACTGGCTGAGCGCGCAAGACGCTGCACAGTTCTTCAACTTGCTGTACAATGACGCAACGGTCGACAAATTCTTCTACAGCGGACTCTGCGCTGATGTGAATGACTATTACAACTCTAAATGGAACAAGTGGATGGGAAACCTGTGGCGCGAGTATCTTGATACACCGTGGGCGATTATTTCTTTGATTGCGGCGTTTATTCTGCTGGTTCTCACAACGTTGCAGACAGTATACACAATGCATCAGTATTATCATCCTCCTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

446

Amino Acids

51.47

Weight (kDa)

5.93

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 47 - 428 2.7e-112 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 817, 1130
AccBSI CCGCTC 1 cut(s) 135
AccI GTMKAC 3 cut(s) 54, 1134, 1302
AccII CGCG 4 cut(s) 363, 505, 1085, 1221
AciI CCGC 6 cut(s) 88, 133, 505, 568, 1152, 1262
AclI AACGTT 1 cut(s) 1289
AclWI GGATC 2 cut(s) 371, 380
AcsI RAATTY 4 cut(s) 248, 595, 874, 1139
AcuI CTGAAG 1 cut(s) 922
AcvI CACGTG 1 cut(s) 302
AfaI GTAC 3 cut(s) 281, 417, 1118
AfiI CCNNNNNNNGG 2 cut(s) 259, 504
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 4 cut(s) 145, 764, 880, 1108
AjnI CCWGG 1 cut(s) 706
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
AloI GAACNNNNNNTCC 2 cut(s) 648, 680
AluBI AGCT 2 cut(s) 355, 547
AluI AGCT 2 cut(s) 355, 547
Alw26I GTCTC 2 cut(s) 205, 914
AlwI GGATC 2 cut(s) 371, 380
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 1094
ApoI RAATTY 4 cut(s) 248, 595, 874, 1139
Asp700I GAANNNNTTC 1 cut(s) 444
AspA2I CCTAGG 1 cut(s) 643
AspLEI GCGC 4 cut(s) 1085, 1087, 1163, 1221
AspS9I GGNCC 4 cut(s) 209, 224, 455, 673
AsuHPI GGTGA 1 cut(s) 108
AsuII TTCGAA 1 cut(s) 654
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 3 cut(s) 209, 455, 673
AvrII CCTAGG 1 cut(s) 643
BarI GAAGNNNNNNTAC 2 cut(s) 263, 295
BbrPI CACGTG 1 cut(s) 302
BbvI GCAGC 1 cut(s) 1081
BccI CCATC 5 cut(s) 56, 146, 406, 1003, 1198
BceAI ACGGC 3 cut(s) 572, 728, 986
BcgI CGANNNNNNTGC 4 cut(s) 596, 630, 1021, 1055
BciT130I CCWGG 1 cut(s) 708
BclI TGATCA 1 cut(s) 327
BcoDI GTCTC 2 cut(s) 205, 914
BfaI CTAG 3 cut(s) 536, 603, 644
BfmI CTRYAG 1 cut(s) 1147
BisI GCNGC 2 cut(s) 1095, 1263
BlnI CCTAGG 1 cut(s) 643
BlpI GCTNAGC 1 cut(s) 1079
BlsI GCNGC 2 cut(s) 1096, 1264
Bme1390I CCNGG 1 cut(s) 708
Bme18I GGWCC 3 cut(s) 209, 455, 673
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 4 cut(s) 209, 224, 455, 673
BmiI GGNNCC 6 cut(s) 211, 226, 457, 675, 850, 944
BmrFI CCNGG 1 cut(s) 708
BmrI ACTGGG 1 cut(s) 1076
BmsI GCATC 4 cut(s) 99, 416, 669, 1321
BmuI ACTGGG 1 cut(s) 1076
BpmI CTGGAG 1 cut(s) 548
Bpu1102I GCTNAGC 1 cut(s) 1079
Bpu14I TTCGAA 1 cut(s) 654
Bsa29I ATCGAT 1 cut(s) 384
BsaAI YACGTR 1 cut(s) 302
BsaJI CCNNGG 5 cut(s) 551, 588, 643, 706, 1238
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 504
Bse118I RCCGGY 1 cut(s) 827
Bse1I ACTGG 4 cut(s) 281, 870, 1071, 1079
Bse3DI GCAATG 1 cut(s) 968
BseBI CCWGG 1 cut(s) 708
BseCI ATCGAT 1 cut(s) 384
BseDI CCNNGG 5 cut(s) 551, 588, 643, 706, 1238
BseGI GGATG 5 cut(s) 431, 630, 663, 1209, 1324
BseLI CCNNNNNNNGG 2 cut(s) 259, 504
BseMI GCAATG 1 cut(s) 968
BseMII CTCAG 2 cut(s) 121, 1070
BseNI ACTGG 4 cut(s) 281, 870, 1071, 1079
BsePI GCGCGC 1 cut(s) 1083
BseRI GAGGAG 2 cut(s) 610, 613
BseXI GCAGC 1 cut(s) 1081
BsgI GTGCAG 3 cut(s) 484, 704, 1080
Bsh1236I CGCG 4 cut(s) 363, 505, 1085, 1221
Bsh1285I CGRYCG 1 cut(s) 1134
BshFI GGCC 1 cut(s) 225
BshVI ATCGAT 1 cut(s) 384
BsiEI CGRYCG 1 cut(s) 1134
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 828
BslFI GGGAC 1 cut(s) 752
BslI CCNNNNNNNGG 2 cut(s) 259, 504
BsmAI GTCTC 2 cut(s) 205, 914
BsmBI CGTCTC 2 cut(s) 205, 914
BsmFI GGGAC 1 cut(s) 752
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 1 cut(s) 225
BsoBI CYCGRG 1 cut(s) 152
Bsp119I TTCGAA 1 cut(s) 654
Bsp1407I TGTACA 1 cut(s) 1116
Bsp143I GATC 5 cut(s) 327, 376, 385, 730, 747
Bsp1720I GCTNAGC 1 cut(s) 1079
Bsp19I CCATGG 1 cut(s) 551
Bsp68I TCGCGA 1 cut(s) 363
BspACI CCGC 6 cut(s) 88, 133, 505, 568, 1152, 1262
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 2 cut(s) 120, 1071
BspDI ATCGAT 1 cut(s) 384
BspFNI CGCG 4 cut(s) 363, 505, 1085, 1221
BspLI GGNNCC 6 cut(s) 211, 226, 457, 675, 850, 944
BspPI GGATC 2 cut(s) 371, 380
BspQI GCTCTTC 1 cut(s) 345
BspT104I TTCGAA 1 cut(s) 654
BsrBI CCGCTC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 968
BsrFI RCCGGY 1 cut(s) 827
BsrGI TGTACA 1 cut(s) 1116
BsrI ACTGG 4 cut(s) 281, 870, 1071, 1079
BssAI RCCGGY 1 cut(s) 827
BssECI CCNNGG 5 cut(s) 551, 588, 643, 706, 1238
BssHII GCGCGC 1 cut(s) 1083
BssMI GATC 5 cut(s) 327, 376, 385, 730, 747
BssNAI GTATAC 1 cut(s) 1303
BssT1I CCWWGG 2 cut(s) 551, 643
Bst1107I GTATAC 1 cut(s) 1303
Bst2UI CCWGG 1 cut(s) 708
Bst4CI ACNGT 7 cut(s) 221, 368, 491, 1101, 1132, 1239, 1300
Bst6I CTCTTC 2 cut(s) 345, 941
BstAUI TGTACA 1 cut(s) 1116
BstBAI YACGTR 1 cut(s) 302
BstBI TTCGAA 1 cut(s) 654
BstC8I GCNNGC 9 cut(s) 126, 180, 322, 357, 361, 503, 829, 859, 1085
BstDEI CTNAG 3 cut(s) 107, 1079, 1332
BstDSI CCRYGG 3 cut(s) 551, 588, 1238
BstF5I GGATG 5 cut(s) 431, 630, 663, 1209, 1324
BstFNI CGCG 4 cut(s) 363, 505, 1085, 1221
BstHHI GCGC 4 cut(s) 1085, 1087, 1163, 1221
BstKTI GATC 5 cut(s) 330, 379, 388, 733, 750
BstMAI GTCTC 2 cut(s) 205, 914
BstMBI GATC 5 cut(s) 327, 376, 385, 730, 747
BstMCI CGRYCG 1 cut(s) 1134
BstMWI GCNNNNNNNGC 3 cut(s) 1084, 1091, 1158
BstNI CCWGG 1 cut(s) 708
BstSCI CCNGG 1 cut(s) 706
BstSFI CTRYAG 1 cut(s) 1147
BstUI CGCG 4 cut(s) 363, 505, 1085, 1221
BstV1I GCAGC 1 cut(s) 1081
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BstZ17I GTATAC 1 cut(s) 1303
Bsu15I ATCGAT 1 cut(s) 384
BsuRI GGCC 1 cut(s) 225
BsuTUI ATCGAT 1 cut(s) 384
BtgI CCRYGG 3 cut(s) 551, 588, 1238
BtgZI GCGATG 1 cut(s) 934
BtsCI GGATG 5 cut(s) 431, 630, 663, 1209, 1324
BtsI GCAGTG 2 cut(s) 286, 967
BtsIMutI CAGTG 5 cut(s) 226, 274, 286, 496, 967
BtuMI TCGCGA 1 cut(s) 363
Cac8I GCNNGC 9 cut(s) 126, 180, 322, 357, 361, 503, 829, 859, 1085
CfoI GCGC 4 cut(s) 1085, 1087, 1163, 1221
Cfr10I RCCGGY 1 cut(s) 827
Cfr13I GGNCC 4 cut(s) 209, 224, 455, 673
ClaI ATCGAT 1 cut(s) 384
CseI GACGC 2 cut(s) 1100, 1133
Csp6I GTAC 3 cut(s) 280, 416, 1117
CviAII CATG 6 cut(s) 230, 259, 340, 409, 521, 552
CviQI GTAC 3 cut(s) 280, 416, 1117
DdeI CTNAG 3 cut(s) 107, 1079, 1332
DpnI GATC 5 cut(s) 329, 378, 387, 732, 749
DpnII GATC 5 cut(s) 327, 376, 385, 730, 747
DrdI GACNNNNNNGTC 2 cut(s) 817, 1130
DseDI GACNNNNNNGTC 2 cut(s) 817, 1130
Eam1104I CTCTTC 2 cut(s) 345, 941
EarI CTCTTC 2 cut(s) 345, 941
Eco130I CCWWGG 2 cut(s) 551, 643
Eco47I GGWCC 3 cut(s) 209, 455, 673
Eco57I CTGAAG 1 cut(s) 922
Eco72I CACGTG 1 cut(s) 302
Eco88I CYCGRG 1 cut(s) 152
EcoO109I RGGNCCY 2 cut(s) 455, 673
EcoRII CCWGG 1 cut(s) 706
EcoT14I CCWWGG 2 cut(s) 551, 643
EcoT22I ATGCAT 1 cut(s) 1314
ErhI CCWWGG 2 cut(s) 551, 643
Esp3I CGTCTC 2 cut(s) 205, 914
FaeI CATG 6 cut(s) 233, 262, 343, 412, 524, 555
FaqI GGGAC 1 cut(s) 752
FatI CATG 6 cut(s) 229, 258, 339, 408, 520, 551
FauI CCCGC 1 cut(s) 498
FbaI TGATCA 1 cut(s) 327
FblI GTMKAC 3 cut(s) 54, 1134, 1302
Fnu4HI GCNGC 2 cut(s) 1095, 1263
FokI GGATG 5 cut(s) 438, 617, 650, 1216, 1311
Fsp4HI GCNGC 2 cut(s) 1095, 1263
FspBI CTAG 3 cut(s) 536, 603, 644
GlaI GCGC 4 cut(s) 1084, 1086, 1162, 1220
GluI GCNGC 2 cut(s) 1095, 1263
GsuI CTGGAG 1 cut(s) 548
HaeIII GGCC 1 cut(s) 225
HapII CCGG 1 cut(s) 828
HgaI GACGC 2 cut(s) 1100, 1133
HhaI GCGC 4 cut(s) 1085, 1087, 1163, 1221
Hin1II CATG 6 cut(s) 233, 262, 343, 412, 524, 555
Hin6I GCGC 4 cut(s) 1083, 1085, 1161, 1219
HinP1I GCGC 4 cut(s) 1083, 1085, 1161, 1219
HincII GTYRAC 3 cut(s) 307, 406, 1135
HindII GTYRAC 3 cut(s) 307, 406, 1135
HinfI GANTC 6 cut(s) 236, 255, 648, 837, 1025, 1155
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 1 cut(s) 828
HphI GGTGA 1 cut(s) 108
Hpy166II GTNNAC 7 cut(s) 55, 307, 406, 487, 894, 1135, 1303
Hpy188I TCNGA 3 cut(s) 110, 209, 254
Hpy188III TCNNGA 6 cut(s) 152, 362, 667, 940, 1006, 1229
Hpy8I GTNNAC 7 cut(s) 55, 307, 406, 487, 894, 1135, 1303
Hpy99I CGWCG 1 cut(s) 425
HpyAV CCTTC 6 cut(s) 93, 302, 664, 778, 964, 1055
HpyCH4III ACNGT 7 cut(s) 221, 368, 491, 1101, 1132, 1239, 1300
HpyCH4IV ACGT 4 cut(s) 301, 807, 992, 1289
HpyCH4V TGCA 8 cut(s) 286, 501, 721, 861, 972, 1097, 1294, 1312
HpyF10VI GCNNNNNNNGC 3 cut(s) 1084, 1091, 1158
HpyF3I CTNAG 3 cut(s) 107, 1079, 1332
HpySE526I ACGT 4 cut(s) 301, 807, 992, 1289
Hsp92II CATG 6 cut(s) 233, 262, 343, 412, 524, 555
HspAI GCGC 4 cut(s) 1083, 1085, 1161, 1219
KroI GCCGGC 1 cut(s) 827
KroNI GCCGGC 1 cut(s) 829
Ksp22I TGATCA 1 cut(s) 327
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 5 cut(s) 327, 376, 385, 730, 747
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 2 cut(s) 140, 165
Lsp1109I GCAGC 1 cut(s) 1081
LweI GCATC 4 cut(s) 99, 416, 669, 1321
MaeI CTAG 3 cut(s) 536, 603, 644
MaeII ACGT 4 cut(s) 301, 807, 992, 1289
MaeIII GTNAC 2 cut(s) 368, 808
MalI GATC 5 cut(s) 329, 378, 387, 732, 749
MbiI CCGCTC 1 cut(s) 135
MboI GATC 5 cut(s) 327, 376, 385, 730, 747
MboII GAAGA 8 cut(s) 133, 169, 362, 620, 643, 928, 1096, 1135
MflI RGATCY 1 cut(s) 376
MluCI AATT 7 cut(s) 18, 77, 248, 595, 798, 874, 1139
MlyI GAGTC 2 cut(s) 249, 1149
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 7 cut(s) 628, 631, 634, 638, 774, 956, 1338
Mph1103I ATGCAT 1 cut(s) 1314
MroNI GCCGGC 1 cut(s) 827
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 3 cut(s) 21, 306, 581
MspA1I CMGCKG 2 cut(s) 568, 1152
MspI CCGG 1 cut(s) 828
MspR9I CCNGG 1 cut(s) 708
Mva1269I GAATGC 1 cut(s) 128
MvaI CCWGG 1 cut(s) 708
MvnI CGCG 4 cut(s) 363, 505, 1085, 1221
MwoI GCNNNNNNNGC 3 cut(s) 1084, 1091, 1158
NaeI GCCGGC 1 cut(s) 829
NcoI CCATGG 1 cut(s) 551
NdeII GATC 5 cut(s) 327, 376, 385, 730, 747
NgoMIV GCCGGC 1 cut(s) 827
NlaIII CATG 6 cut(s) 233, 262, 343, 412, 524, 555
NlaIV GGNNCC 6 cut(s) 211, 226, 457, 675, 850, 944
NmeAIII GCCGAG 1 cut(s) 943
NmuCI GTSAC 1 cut(s) 808
NruI TCGCGA 1 cut(s) 363
NsiI ATGCAT 1 cut(s) 1314
NspV TTCGAA 1 cut(s) 654
PauI GCGCGC 1 cut(s) 1083
PciSI GCTCTTC 1 cut(s) 345
PcsI WCGNNNNNNNCGW 2 cut(s) 474, 1131
PctI GAATGC 1 cut(s) 128
PdiI GCCGGC 1 cut(s) 829
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 4 cut(s) 236, 648, 837, 1025
PflFI GACNNNGTC 1 cut(s) 197
PkrI GCNGC 2 cut(s) 1096, 1264
PleI GAGTC 2 cut(s) 249, 1149
PmaCI CACGTG 1 cut(s) 302
PmlI CACGTG 1 cut(s) 302
PpsI GAGTC 2 cut(s) 249, 1149
Ppu21I YACGTR 1 cut(s) 302
PpuMI RGGWCCY 2 cut(s) 455, 673
Psp1406I AACGTT 1 cut(s) 1289
Psp5II RGGWCCY 2 cut(s) 455, 673
Psp6I CCWGG 1 cut(s) 706
PspCI CACGTG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 706
PspN4I GGNNCC 6 cut(s) 211, 226, 457, 675, 850, 944
PspPI GGNCC 4 cut(s) 209, 224, 455, 673
PspPPI RGGWCCY 2 cut(s) 455, 673
PsuI RGATCY 1 cut(s) 376
PsyI GACNNNGTC 1 cut(s) 197
PteI GCGCGC 1 cut(s) 1083
RruI TCGCGA 1 cut(s) 363
RsaI GTAC 3 cut(s) 281, 417, 1118
RsaNI GTAC 3 cut(s) 280, 416, 1117
SalI GTCGAC 1 cut(s) 1133
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 3 cut(s) 21, 306, 581
SatI GCNGC 2 cut(s) 1095, 1263
Sau3AI GATC 5 cut(s) 327, 376, 385, 730, 747
Sau96I GGNCC 4 cut(s) 209, 224, 455, 673
SchI GAGTC 2 cut(s) 249, 1149
ScrFI CCNGG 1 cut(s) 708
SfaNI GCATC 4 cut(s) 99, 416, 669, 1321
SfcI CTRYAG 1 cut(s) 1147
SfuI TTCGAA 1 cut(s) 654
SinI GGWCC 3 cut(s) 209, 455, 673
Sse9I AATT 7 cut(s) 18, 77, 248, 595, 798, 874, 1139
SsiI CCGC 6 cut(s) 88, 133, 505, 568, 1152, 1262
SspMI CTAG 3 cut(s) 536, 603, 644
StyD4I CCNGG 1 cut(s) 706
StyI CCWWGG 2 cut(s) 551, 643
TaaI ACNGT 7 cut(s) 221, 368, 491, 1101, 1132, 1239, 1300
TaiI ACGT 4 cut(s) 304, 810, 995, 1292
TasI AATT 7 cut(s) 18, 77, 248, 595, 798, 874, 1139
TatI WGTACW 1 cut(s) 1116
TauI GCSGC 1 cut(s) 1265
TfiI GAWTC 4 cut(s) 236, 648, 837, 1025
Tru1I TTAA 3 cut(s) 21, 306, 581
Tru9I TTAA 3 cut(s) 21, 306, 581
TscAI CASTG 5 cut(s) 226, 281, 293, 496, 974
TseFI GTSAC 1 cut(s) 808
TseI GCWGC 1 cut(s) 1094
Tsp45I GTSAC 1 cut(s) 808
TspDTI ATGAA 2 cut(s) 90, 1009
TspGWI ACGGA 2 cut(s) 178, 438
TspRI CASTG 5 cut(s) 226, 281, 293, 496, 974
Tth111I GACNNNGTC 1 cut(s) 197
VpaK11BI GGWCC 3 cut(s) 209, 455, 673
XapI RAATTY 4 cut(s) 248, 595, 874, 1139
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XmaJI CCTAGG 1 cut(s) 643
XmiI GTMKAC 3 cut(s) 54, 1134, 1302
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 3 cut(s) 536, 603, 644
Zsp2I ATGCAT 1 cut(s) 1314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.