Rroxscaffold_3G00268790

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000188
Physical Location & Seq
Forward (+)
61846666 .. 61848827
2162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00268790.1

Sequence Viewer

Length: 438 bp
ATGGTTAATTGGTTGAACACTGAAGATGCATCCCAATTTTTCAACAAGCTTTACAATGACACTGTTCTCAAGCAATTCTACTATGGTGGACTCTGTGCTGAAGTGAATAGATATTACAAAGTTACATGGAACAAGTGGCTGGAAAAATTGAAGCGTGATTATTTATGTAATCCATGGAAAATTACTTCTTTGGTTGCAGCCTTCATCCTTCTGCATAACGAACATAGAATTAAAAGATGGGATTCTTACAATGCCCAAGTTGACTATTGTAGAGTTGACAGAATTCTCATTGCCCTTGAACAATGCTATCACGGCCGCTCGCCTAAGATAACTTCTTATGCCCTTTTGGTGGATAACCTCATCGGTTCTAGCAAGGACATTGATTTTCTCTGTGAGAAAAAAATCAAGATCATCAATAACTGGCTTGAGTTCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

17.44

Weight (kDa)

8.92

Isoelectric Point (pI)

32.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 2 - 71 2.7e-16 Plant protein of unknown function
DUF247 PF03140 96 - 142 4.8e-09 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 318
AciI CCGC 1 cut(s) 316
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 2 cut(s) 42, 120
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 4 cut(s) 16, 43, 151, 299
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 282
BbvI GCAGC 1 cut(s) 209
BccI CCATC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 328
BfaI CTAG 1 cut(s) 369
BisI GCNGC 2 cut(s) 198, 316
BlsI GCNGC 2 cut(s) 199, 317
BmsI GCATC 2 cut(s) 16, 38
BpuEI CTTGAG 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse1I ACTGG 1 cut(s) 425
Bse3DI GCAATG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 173
BseGI GGATG 2 cut(s) 29, 204
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMI GCAATG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 425
BseX3I CGGCCG 1 cut(s) 313
BseXI GCAGC 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 316
BshFI GGCC 1 cut(s) 315
BsiEI CGRYCG 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 349
BsnI GGCC 1 cut(s) 315
Bsp143I GATC 1 cut(s) 408
Bsp19I CCATGG 1 cut(s) 173
BspACI CCGC 1 cut(s) 316
BspANI GGCC 1 cut(s) 315
BsrBI CCGCTC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 288
BsrI ACTGG 1 cut(s) 425
BssECI CCNNGG 1 cut(s) 173
BssMI GATC 1 cut(s) 408
BssT1I CCWWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 324
BstDSI CCRYGG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 29, 204
BstKTI GATC 1 cut(s) 411
BstMBI GATC 1 cut(s) 408
BstMCI CGRYCG 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 209
BstZI CGGCCG 1 cut(s) 313
BsuRI GGCC 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 173
BtsCI GGATG 2 cut(s) 29, 204
BtsIMutI CAGTG 2 cut(s) 18, 60
Cac8I GCNNGC 1 cut(s) 320
CviAII CATG 2 cut(s) 126, 174
CviJI RGCY 5 cut(s) 49, 139, 200, 315, 424
CviKI_1 RGCY 5 cut(s) 49, 139, 200, 315, 424
DdeI CTNAG 1 cut(s) 324
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
EaeI YGGCCR 1 cut(s) 313
EagI CGGCCG 1 cut(s) 313
EclXI CGGCCG 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 173
Eco52I CGGCCG 1 cut(s) 313
Eco57I CTGAAG 2 cut(s) 42, 120
EcoRI GAATTC 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 2 cut(s) 129, 177
FaiI YATR 7 cut(s) 84, 127, 166, 175, 216, 225, 339
FatI CATG 2 cut(s) 125, 173
Fnu4HI GCNGC 2 cut(s) 198, 316
FokI GGATG 2 cut(s) 16, 191
Fsp4HI GCNGC 2 cut(s) 198, 316
FspBI CTAG 1 cut(s) 369
GluI GCNGC 2 cut(s) 198, 316
HaeIII GGCC 1 cut(s) 315
Hin1II CATG 2 cut(s) 129, 177
HincII GTYRAC 2 cut(s) 262, 277
HindII GTYRAC 2 cut(s) 262, 277
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 2 cut(s) 90, 242
Hpy166II GTNNAC 3 cut(s) 89, 262, 277
Hpy188I TCNGA 1 cut(s) 434
Hpy188III TCNNGA 1 cut(s) 406
Hpy8I GTNNAC 3 cut(s) 89, 262, 277
HpyAV CCTTC 2 cut(s) 211, 218
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 3 cut(s) 29, 197, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 312
HpyF3I CTNAG 1 cut(s) 324
Hsp92II CATG 2 cut(s) 129, 177
Kzo9I GATC 1 cut(s) 408
LpnPI CCDG 2 cut(s) 125, 406
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 2 cut(s) 16, 38
MaeI CTAG 1 cut(s) 369
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 410
MbiI CCGCTC 1 cut(s) 318
MboI GATC 1 cut(s) 408
MboII GAAGA 1 cut(s) 35
MluCI AATT 7 cut(s) 7, 35, 74, 146, 180, 228, 282
MlyI GAGTC 1 cut(s) 84
MnlI CCTC 1 cut(s) 368
Mph1103I ATGCAT 1 cut(s) 31
MseI TTAA 2 cut(s) 6, 231
MwoI GCNNNNNNNGC 1 cut(s) 312
NcoI CCATGG 1 cut(s) 173
NdeII GATC 1 cut(s) 408
NlaIII CATG 2 cut(s) 129, 177
NsiI ATGCAT 1 cut(s) 31
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 2 cut(s) 199, 317
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 6, 231
SatI GCNGC 2 cut(s) 198, 316
Sau3AI GATC 1 cut(s) 408
SchI GAGTC 1 cut(s) 84
SetI ASST 2 cut(s) 51, 360
SfaNI GCATC 2 cut(s) 16, 38
SmlI CTYRAG 2 cut(s) 68, 425
SmoI CTYRAG 2 cut(s) 68, 425
Sse9I AATT 7 cut(s) 7, 35, 74, 146, 180, 228, 282
SsiI CCGC 1 cut(s) 316
SspMI CTAG 1 cut(s) 369
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 1 cut(s) 64
TasI AATT 7 cut(s) 7, 35, 74, 146, 180, 228, 282
TauI GCSGC 1 cut(s) 318
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 2 cut(s) 6, 231
Tru9I TTAA 2 cut(s) 6, 231
TscAI CASTG 2 cut(s) 25, 67
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 193
TspRI CASTG 2 cut(s) 25, 67
XapI RAATTY 1 cut(s) 282
XspI CTAG 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.