RchiOBHm_Chr3g0483151

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000188
Physical Location & Seq
Forward (+)
29329525 .. 29331069
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44792

Sequence Viewer

Length: 339 bp
ATGAGTATTGATTTCAAAGATGGAGTTCTCATGATTCCACAGCTTGCAATTGCAGAGATGAATGAACCTTTGTTCAGGAACCTCATAGCCTTCGAGCAATGCTATAATGGTCGCGGGCATAAAGTAACTTCTTATGCACTTTTAATGGATAACCTCATTGCTTCCAGTAAGGATGTTGTTTTTCTTTGTGACAAAGAAATAATCCATAATTGGTTGAGTGCTGAAGAAGCTTCCCAGTTGTTCAGTAAGCTTTATAGTGACACATTGATTGATGATTTTTGCTATGGCGGGCTCTGTGCTACAGTGAATAAATATTACAAAGATGGAAAAAGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.62

Weight (kDa)

4.82

Isoelectric Point (pI)

30.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 2 - 108 2.2e-31 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AciI CCGC 2 cut(s) 114, 288
AcuI CTGAAG 1 cut(s) 243
AgsI TTSAA 1 cut(s) 16
AluBI AGCT 3 cut(s) 43, 230, 250
AluI AGCT 3 cut(s) 43, 230, 250
BanII GRGCYC 1 cut(s) 294
BccI CCATC 2 cut(s) 14, 317
BfaI CTAG 1 cut(s) 337
BfmI CTRYAG 1 cut(s) 300
BmiI GGNNCC 1 cut(s) 80
BmrI ACTGGG 1 cut(s) 229
BmuI ACTGGG 1 cut(s) 229
Bse1I ACTGG 2 cut(s) 165, 235
Bse3DI GCAATG 2 cut(s) 104, 156
BseGI GGATG 1 cut(s) 178
BseMI GCAATG 2 cut(s) 104, 156
BseNI ACTGG 2 cut(s) 165, 235
Bsh1236I CGCG 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 294
BspACI CCGC 2 cut(s) 114, 288
BspFNI CGCG 1 cut(s) 114
BspHI TCATGA 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 80
BsrDI GCAATG 2 cut(s) 104, 156
BsrI ACTGG 2 cut(s) 165, 235
Bst4CI ACNGT 1 cut(s) 304
BstC8I GCNNGC 3 cut(s) 45, 116, 290
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstSFI CTRYAG 1 cut(s) 300
BstUI CGCG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 3 cut(s) 45, 116, 290
CciI TCATGA 1 cut(s) 30
CviAII CATG 1 cut(s) 31
CviJI RGCY 6 cut(s) 43, 89, 230, 250, 292, 336
CviKI_1 RGCY 6 cut(s) 43, 89, 230, 250, 292, 336
Eco24I GRGCYC 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 294
FaeI CATG 1 cut(s) 34
FaiI YATR 8 cut(s) 32, 86, 105, 120, 135, 207, 255, 285
FatI CATG 1 cut(s) 30
FauI CCCGC 2 cut(s) 107, 281
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 294
FspBI CTAG 1 cut(s) 337
Hin1II CATG 1 cut(s) 34
HindIII AAGCTT 2 cut(s) 228, 248
HinfI GANTC 1 cut(s) 34
Hpy188III TCNNGA 2 cut(s) 31, 76
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 3 cut(s) 47, 53, 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
Hsp92II CATG 1 cut(s) 34
LpnPI CCDG 3 cut(s) 61, 178, 248
MaeI CTAG 1 cut(s) 337
MaeIII GTNAC 3 cut(s) 124, 188, 257
MboII GAAGA 1 cut(s) 236
MfeI CAATTG 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 2 cut(s) 48, 208
MnlI CCTC 2 cut(s) 92, 164
MseI TTAA 1 cut(s) 143
MunI CAATTG 1 cut(s) 48
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 227
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 80
NmuCI GTSAC 2 cut(s) 188, 257
PagI TCATGA 1 cut(s) 30
PfeI GAWTC 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 143
SduI GDGCHC 1 cut(s) 294
SetI ASST 6 cut(s) 45, 70, 84, 156, 232, 252
SfcI CTRYAG 1 cut(s) 300
SgeI CNNG 9 cut(s) 43, 56, 88, 106, 125, 127, 177, 247, 301
Sse9I AATT 2 cut(s) 48, 208
SsiI CCGC 2 cut(s) 114, 288
SspI AATATT 1 cut(s) 314
SspMI CTAG 1 cut(s) 337
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 48, 208
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 2 cut(s) 188, 257
Tsp45I GTSAC 2 cut(s) 188, 257
TspDTI ATGAA 2 cut(s) 74, 78
TspRI CASTG 1 cut(s) 309
XspI CTAG 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.