RchiOBHm_Chr5g0070431

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000188
Physical Location & Seq
Reverse (-)
76154975 .. 76155905
931 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34566

Sequence Viewer

Length: 396 bp
ATGATTGCATTCGAGCAGTGCTATTACAATTACCTGCCCCTGATAACCTCCTACGTGGTTTTGATGACTAACCTTATTCATTCGAGCAAGGATTTGGAGCTTCTATATGGGAAAGGAATAGTGGCCTACTCCATGACTTCACCACAATTTGGATGGTTCTCCTATGTGGACCTTTTTGAAAAAGTCCAAGATTATTATGAAAATCAGTTGGACAAATGTTTACCAAGACCAAAAAGATACGAGTGGATCAAGATATTGAAGCGTGACTATTTTAGTACACCATGGAAAGTTCTTTCTCTGATTGCAGCTTTTATCCTCCTTGTTCTCACCTTACTACAAACCATATACACACTATTAGGGAAATTACAATCCCTTGCATCAAGGCTCACAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

131

Amino Acids

15.46

Weight (kDa)

9.0

Isoelectric Point (pI)

29.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 109 1.8e-20 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 42
AccB7I CCANNNNNTGG 1 cut(s) 149
AclWI GGATC 1 cut(s) 254
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 2 cut(s) 179, 259
AluBI AGCT 2 cut(s) 100, 308
AluI AGCT 2 cut(s) 100, 308
AlwI GGATC 1 cut(s) 254
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 2 cut(s) 132, 319
AvaII GGWCC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 317
BccI CCATC 1 cut(s) 147
BfuAI ACCTGC 1 cut(s) 42
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmsI GCATC 1 cut(s) 386
BsaAI YACGTR 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 317
BshFI GGCC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 149
BsmI GAATGC 1 cut(s) 8
BsnI GGCC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 246
Bsp19I CCATGG 1 cut(s) 281
BspANI GGCC 1 cut(s) 125
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 281
BstBAI YACGTR 1 cut(s) 55
BstDSI CCRYGG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 158
BstKTI GATC 1 cut(s) 249
BstMBI GATC 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 317
BsuRI GGCC 1 cut(s) 125
BtgI CCRYGG 1 cut(s) 281
BtsCI GGATG 1 cut(s) 158
BtsI GCAGTG 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 23
BveI ACCTGC 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 276
CviAII CATG 2 cut(s) 133, 282
CviJI RGCY 4 cut(s) 100, 125, 308, 385
CviKI_1 RGCY 4 cut(s) 100, 125, 308, 385
CviQI GTAC 1 cut(s) 276
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 2 cut(s) 136, 285
FaiI YATR 8 cut(s) 106, 108, 134, 165, 198, 283, 344, 346
FatI CATG 2 cut(s) 132, 281
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 306
GluI GCNGC 1 cut(s) 306
HaeIII GGCC 1 cut(s) 125
Hin1II CATG 2 cut(s) 136, 285
HphI GGTGA 2 cut(s) 132, 319
Hpy166II GTNNAC 3 cut(s) 169, 221, 278
Hpy188I TCNGA 1 cut(s) 300
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 3 cut(s) 169, 221, 278
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 3 cut(s) 8, 305, 377
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 2 cut(s) 136, 285
Kzo9I GATC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 2 cut(s) 47, 53
Lsp1109I GCAGC 1 cut(s) 317
LweI GCATC 1 cut(s) 386
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 263
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MluCI AATT 3 cut(s) 28, 146, 362
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 2 cut(s) 58, 326
Mva1269I GAATGC 1 cut(s) 8
NcoI CCATGG 1 cut(s) 281
NdeII GATC 1 cut(s) 246
NlaIII CATG 2 cut(s) 136, 285
NmuCI GTSAC 1 cut(s) 263
PctI GAATGC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 149
PkrI GCNGC 1 cut(s) 307
Ppu21I YACGTR 1 cut(s) 55
PspPI GGNCC 1 cut(s) 169
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 1 cut(s) 169
SetI ASST 8 cut(s) 36, 50, 57, 75, 102, 174, 310, 332
SfaNI GCATC 1 cut(s) 386
SinI GGWCC 1 cut(s) 169
Sse9I AATT 3 cut(s) 28, 146, 362
StyI CCWWGG 1 cut(s) 281
TaiI ACGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 12, 83
TasI AATT 3 cut(s) 28, 146, 362
TatI WGTACW 1 cut(s) 275
TscAI CASTG 1 cut(s) 23
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 2 cut(s) 68, 213
TspRI CASTG 1 cut(s) 23
Van91I CCANNNNNTGG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.