FvH4_5g11900

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000188
Physical Location & Seq
Forward (+)
6744273 .. 6746166
1894 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11900.t1

Sequence Viewer

Length: 1374 bp
ATGGCAAATGATATAGAAAGCAGTAAAAGCACCTGTTCAGAGATTGAAACTTCGGATAGTGTTACAGAAGATTACGAGTGCAAAGCTATTGTTGAGGCATTGAACACTGCAGCAAAGCTTCGCATTGATTCACTATGGTCTGCTAAGTGGTGCATTTTCAGAGTCCCCAAAGTGCTTCAGAGGCATAAACCTGAGGCATATAGACCTCATGTTGTCTCAATCGGTCCCTTCCACCACAGAGGTGAACAATTTCAACCCATTCAAGCTGTGAAGCAATGGTATTTACATAACCTTCTCTCACTCCGGAACATGAGTTTGAAAACATTGATCCAAGGCATTGATAATATCTCTGAGTTTGAGAAACGTGCTCGTGAATGTTATGCAGAACCACTTGACCTTAACCACGATGAATTCATAGAAATGATGGTAATTGATGGTTGCTTCCTGATAGAACTATTTCGGAAACATTTCTATTGGTCATATAGGAAGGTCATTAAGAAAGATCTAGTTCCAGCTGAAGAACTAAATATCGACAAGGACCCTATATTCAACATGGATTGCATGCTCCAATATATTTTTCAAGACCTTATGCTACTAGAAAATCAGTTACCTTGGTTTGTTCTTGAGTGTTTATTTGGTCTTACCATGGAAAAACACGTCAGCTATTCTCTCAATGAACTTGTGCTTGTTGCCTTTAGGTCACAGCGATCACTGGCATGTAATCTGGAGTTCTATCTTCGTCACACTAATGATGATGACGGTGATGAAGTTTTGCACATACTTGATCTGGTAAGATCTGCAACAACTTATGGATTCAAAAACCGTGAGCTAATAACCAGCTCAGAGTTAATATTGCCTCCTGCAACTCTTCTCTCAAAGGCAGGTATTAAATTCATAGAGAGCACTGATTGTGGCATAATGGACATGGATTTCAAAGATGGTGTTTTTGCTATTCCACAACTGTCCATTATAGAGTCCACAGAACCATTGTTGAGGAACCTCATTGCCTTTGAGCAATGTTGTCAGGGTCGCTCTCCGAAAGTGACATCTTATGTTAGTATAATGAACAGCCTCATCACTACCAGCAAAGATATGGATCTTCTTTGTAGGAAAGGTATAATCCGGCACTATGATCCCATGTTCTTCAACAAGCTTCTCAATGATACGAAACTCAACAATTTCTACTTCACTGGACTGTGTAATGAAGTGAACAAACATTATATTGTTTCATGGAACAAGTGGCTAGAAAAGTTGAAGCGAGATTACTTCTCCAACCCATGGGCAATCACTTCTTTGGTTGCAGCCTCCATCTTTCTGGTTCTGACCTTATTGCAGACCACATATACCATTCGGCAATACTATTCTCCTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

458

Amino Acids

53.25

Weight (kDa)

5.89

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 52 - 441 3.3e-104 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 872
AccB7I CCANNNNNTGG 1 cut(s) 1278
AccIII TCCGGA 1 cut(s) 303
AclWI GGATC 3 cut(s) 322, 1104, 1127
AcsI RAATTY 2 cut(s) 410, 890
AcuI CTGAAG 2 cut(s) 161, 537
AfiI CCNNNNNNNGG 1 cut(s) 1278
AflIII ACRYGT 1 cut(s) 655
AjiI CACGTC 1 cut(s) 658
AjuI GAANNNNNNNTTGG 2 cut(s) 561, 593
AleI CACNNNNGTG 1 cut(s) 240
AluBI AGCT 8 cut(s) 86, 118, 266, 515, 663, 829, 840, 1153
AluI AGCT 8 cut(s) 86, 118, 266, 515, 663, 829, 840, 1153
Alw21I GWGCWC 2 cut(s) 370, 905
Alw26I GTCTC 1 cut(s) 220
AlwI GGATC 3 cut(s) 322, 1104, 1127
Aor13HI TCCGGA 1 cut(s) 303
ApeKI GCWGC 2 cut(s) 110, 1301
ApoI RAATTY 2 cut(s) 410, 890
Asp700I GAANNNNTTC 3 cut(s) 249, 456, 467
AspS9I GGNCC 2 cut(s) 224, 538
AsuHPI GGTGA 2 cut(s) 254, 773
AvaII GGWCC 2 cut(s) 224, 538
AxyI CCTNAGG 1 cut(s) 192
BarI GAAGNNNNNNTAC 2 cut(s) 1247, 1279
BauI CACGAG 1 cut(s) 369
Bbv12I GWGCWC 2 cut(s) 370, 905
BbvI GCAGC 2 cut(s) 122, 1313
BccI CCATC 4 cut(s) 418, 428, 932, 1316
BcoDI GTCTC 1 cut(s) 220
BfaI CTAG 4 cut(s) 506, 596, 1244, 1372
BfmI CTRYAG 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 872
BglII AGATCT 2 cut(s) 502, 794
BisI GCNGC 2 cut(s) 111, 1302
BlsI GCNGC 2 cut(s) 112, 1303
Bme18I GGWCC 2 cut(s) 224, 538
BmgBI CACGTC 1 cut(s) 658
BmgT120I GGNCC 2 cut(s) 224, 538
BmiI GGNNCC 3 cut(s) 226, 540, 998
BpmI CTGGAG 1 cut(s) 746
BpuEI CTTGAG 1 cut(s) 644
BsaBI GATNNNNATC 1 cut(s) 1095
BsaJI CCNNGG 4 cut(s) 331, 611, 645, 1277
BsaWI WCCGGW 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 1278
Bse1I ACTGG 2 cut(s) 717, 1195
Bse21I CCTNAGG 1 cut(s) 192
Bse3DI GCAATG 3 cut(s) 281, 1002, 1022
Bse8I GATNNNNATC 1 cut(s) 1095
BseAI TCCGGA 1 cut(s) 303
BseDI CCNNGG 4 cut(s) 331, 611, 645, 1277
BseJI GATNNNNATC 1 cut(s) 1095
BseLI CCNNNNNNNGG 1 cut(s) 1278
BseMI GCAATG 3 cut(s) 281, 1002, 1022
BseMII CTCAG 3 cut(s) 183, 342, 855
BseNI ACTGG 2 cut(s) 717, 1195
BseRI GAGGAG 1 cut(s) 1356
BseXI GCAGC 2 cut(s) 122, 1313
BsiHKAI GWGCWC 2 cut(s) 370, 905
BsiSI CCGG 2 cut(s) 304, 1123
BslFI GGGAC 2 cut(s) 149, 210
BslI CCNNNNNNNGG 1 cut(s) 1278
BsmAI GTCTC 1 cut(s) 220
BsmFI GGGAC 2 cut(s) 149, 210
Bsp1286I GDGCHC 2 cut(s) 370, 905
Bsp13I TCCGGA 1 cut(s) 303
Bsp143I GATC 7 cut(s) 327, 502, 707, 784, 794, 1096, 1132
Bsp19I CCATGG 2 cut(s) 645, 1277
BspCNI CTCAG 3 cut(s) 184, 343, 854
BspEI TCCGGA 1 cut(s) 303
BspLI GGNNCC 3 cut(s) 226, 540, 998
BspMAI CTGCAG 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 872
BspPI GGATC 3 cut(s) 322, 1104, 1127
BsrDI GCAATG 3 cut(s) 281, 1002, 1022
BsrI ACTGG 2 cut(s) 717, 1195
BssECI CCNNGG 4 cut(s) 331, 611, 645, 1277
BssMI GATC 7 cut(s) 327, 502, 707, 784, 794, 1096, 1132
BssSI CACGAG 1 cut(s) 369
BssT1I CCWWGG 4 cut(s) 331, 611, 645, 1277
Bst2BI CACGAG 1 cut(s) 369
Bst4CI ACNGT 4 cut(s) 761, 824, 963, 1197
Bst6I CTCTTC 1 cut(s) 873
BstC8I GCNNGC 1 cut(s) 563
BstDEI CTNAG 4 cut(s) 144, 192, 351, 841
BstDSI CCRYGG 2 cut(s) 645, 1277
BstKTI GATC 7 cut(s) 330, 505, 710, 787, 797, 1099, 1135
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 7 cut(s) 327, 502, 707, 784, 794, 1096, 1132
BstMWI GCNNNNNNNGC 2 cut(s) 27, 181
BstNSI RCATGY 2 cut(s) 565, 720
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 122, 1313
BstX2I RGATCY 3 cut(s) 502, 794, 1096
BstXI CCANNNNNNTGG 1 cut(s) 1315
BstYI RGATCY 3 cut(s) 502, 794, 1096
Bsu36I CCTNAGG 1 cut(s) 192
BtgI CCRYGG 2 cut(s) 645, 1277
BtrI CACGTC 1 cut(s) 658
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 4 cut(s) 105, 710, 903, 1188
BveI ACCTGC 1 cut(s) 872
Cac8I GCNNGC 1 cut(s) 563
Cfr13I GGNCC 2 cut(s) 224, 538
DdeI CTNAG 4 cut(s) 144, 192, 351, 841
DpnI GATC 7 cut(s) 329, 504, 709, 786, 796, 1098, 1134
DpnII GATC 7 cut(s) 327, 502, 707, 784, 794, 1096, 1132
Eam1104I CTCTTC 1 cut(s) 873
EarI CTCTTC 1 cut(s) 873
Eco130I CCWWGG 4 cut(s) 331, 611, 645, 1277
Eco47I GGWCC 2 cut(s) 224, 538
Eco57I CTGAAG 2 cut(s) 161, 537
Eco81I CCTNAGG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 538
EcoRI GAATTC 1 cut(s) 410
EcoT14I CCWWGG 4 cut(s) 331, 611, 645, 1277
ErhI CCWWGG 4 cut(s) 331, 611, 645, 1277
FaqI GGGAC 2 cut(s) 149, 210
Fnu4HI GCNGC 2 cut(s) 111, 1302
Fsp4HI GCNGC 2 cut(s) 111, 1302
FspBI CTAG 4 cut(s) 506, 596, 1244, 1372
GluI GCNGC 2 cut(s) 111, 1302
GsuI CTGGAG 1 cut(s) 746
HapII CCGG 2 cut(s) 304, 1123
HindIII AAGCTT 2 cut(s) 116, 1151
HinfI GANTC 4 cut(s) 128, 162, 813, 974
HpaII CCGG 2 cut(s) 304, 1123
HphI GGTGA 2 cut(s) 254, 773
Hpy166II GTNNAC 3 cut(s) 245, 978, 1210
Hpy188I TCNGA 9 cut(s) 40, 55, 161, 180, 352, 462, 844, 1038, 1323
Hpy188III TCNNGA 6 cut(s) 304, 371, 445, 581, 623, 725
Hpy8I GTNNAC 3 cut(s) 245, 978, 1210
HpyAV CCTTC 3 cut(s) 238, 302, 481
HpyCH4III ACNGT 4 cut(s) 761, 824, 963, 1197
HpyCH4IV ACGT 2 cut(s) 364, 657
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 181
HpyF3I CTNAG 4 cut(s) 144, 192, 351, 841
HpySE526I ACGT 2 cut(s) 364, 657
Kpn2I TCCGGA 1 cut(s) 303
Kzo9I GATC 7 cut(s) 327, 502, 707, 784, 794, 1096, 1132
LmnI GCTCC 1 cut(s) 570
Lsp1109I GCAGC 2 cut(s) 122, 1313
MaeI CTAG 4 cut(s) 506, 596, 1244, 1372
MaeII ACGT 2 cut(s) 364, 657
MaeIII GTNAC 5 cut(s) 61, 606, 699, 740, 1042
MalI GATC 7 cut(s) 329, 504, 709, 786, 796, 1098, 1134
MboI GATC 7 cut(s) 327, 502, 707, 784, 794, 1096, 1132
MboII GAAGA 6 cut(s) 80, 530, 728, 860, 1091, 1135
MflI RGATCY 3 cut(s) 502, 794, 1096
MhlI GDGCHC 2 cut(s) 370, 905
MluCI AATT 5 cut(s) 248, 410, 429, 890, 1177
MlyI GAGTC 2 cut(s) 171, 983
MmeI TCCRAC 1 cut(s) 1296
MroI TCCGGA 1 cut(s) 303
MroXI GAANNNNTTC 3 cut(s) 249, 456, 467
MseI TTAA 4 cut(s) 399, 495, 848, 888
MslI CAYNNNNRTG 4 cut(s) 240, 419, 715, 747
MspA1I CMGCKG 1 cut(s) 515
MspI CCGG 2 cut(s) 304, 1123
MwoI GCNNNNNNNGC 2 cut(s) 27, 181
NcoI CCATGG 2 cut(s) 645, 1277
NdeII GATC 7 cut(s) 327, 502, 707, 784, 794, 1096, 1132
NlaIV GGNNCC 3 cut(s) 226, 540, 998
NmuCI GTSAC 3 cut(s) 699, 740, 1042
NspI RCATGY 2 cut(s) 565, 720
OliI CACNNNNGTG 1 cut(s) 240
PaeI GCATGC 1 cut(s) 565
PdmI GAANNNNTTC 3 cut(s) 249, 456, 467
PfeI GAWTC 2 cut(s) 128, 813
PflMI CCANNNNNTGG 1 cut(s) 1278
PkrI GCNGC 2 cut(s) 112, 1303
PleI GAGTC 2 cut(s) 170, 982
PpsI GAGTC 2 cut(s) 170, 982
PpuMI RGGWCCY 1 cut(s) 538
Psp5II RGGWCCY 1 cut(s) 538
PspN4I GGNNCC 3 cut(s) 226, 540, 998
PspPI GGNCC 2 cut(s) 224, 538
PspPPI RGGWCCY 1 cut(s) 538
PstI CTGCAG 1 cut(s) 112
PsuI RGATCY 3 cut(s) 502, 794, 1096
PvuII CAGCTG 1 cut(s) 515
RseI CAYNNNNRTG 4 cut(s) 240, 419, 715, 747
SaqAI TTAA 4 cut(s) 399, 495, 848, 888
SatI GCNGC 2 cut(s) 111, 1302
Sau3AI GATC 7 cut(s) 327, 502, 707, 784, 794, 1096, 1132
Sau96I GGNCC 2 cut(s) 224, 538
SchI GAGTC 2 cut(s) 171, 983
SduI GDGCHC 2 cut(s) 370, 905
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 2 cut(s) 224, 538
SmiMI CAYNNNNRTG 4 cut(s) 240, 419, 715, 747
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
SphI GCATGC 1 cut(s) 565
Sse9I AATT 5 cut(s) 248, 410, 429, 890, 1177
SspI AATATT 1 cut(s) 852
SspMI CTAG 4 cut(s) 506, 596, 1244, 1372
StyI CCWWGG 4 cut(s) 331, 611, 645, 1277
TaaI ACNGT 4 cut(s) 761, 824, 963, 1197
TaiI ACGT 2 cut(s) 367, 660
TaqI TCGA 1 cut(s) 531
TaqII GACCGA 1 cut(s) 212
TasI AATT 5 cut(s) 248, 410, 429, 890, 1177
TfiI GAWTC 2 cut(s) 128, 813
Tru1I TTAA 4 cut(s) 399, 495, 848, 888
Tru9I TTAA 4 cut(s) 399, 495, 848, 888
TscAI CASTG 4 cut(s) 112, 717, 910, 1195
TseFI GTSAC 3 cut(s) 699, 740, 1042
TseI GCWGC 2 cut(s) 110, 1301
Tsp45I GTSAC 3 cut(s) 699, 740, 1042
TspDTI ATGAA 8 cut(s) 403, 423, 690, 780, 883, 1079, 1218, 1218
TspRI CASTG 4 cut(s) 112, 717, 910, 1195
Van91I CCANNNNNTGG 1 cut(s) 1278
VpaK11BI GGWCC 2 cut(s) 224, 538
XapI RAATTY 2 cut(s) 410, 890
XceI RCATGY 2 cut(s) 565, 720
XcmI CCANNNNNNNNNTGG 1 cut(s) 1090
XmnI GAANNNNTTC 3 cut(s) 249, 456, 467
XspI CTAG 4 cut(s) 506, 596, 1244, 1372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.