Rorug02G0581200

calcium-binding protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
70514332 .. 70515920
1589 bp
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UTR
Exon/CDS
Intron
Rorug02G0581200.1

Sequence Viewer

Length: 537 bp
ATGGAGGGGGTGAGAAGGGGGTTTGGTTCTGGTTCAGCTGTGGCGGCTGTGGTGCTTTTGGCCTTGGTTTTGGTAATGGTTCCAGAAGCCTCAGCTGCTCGTATTACTGTGGGAGGTAACAAGGGCTGGTCTCCCAATTTTAACTACACAATTTGGGCGCAAGACAAGCACTTCTACAATGGAGATTGGCTCTTTTTTGTGTATGATAGGAACCAGCAGAATATCCTAGAGGTGAACAAGACAAACTATGAGACATGCAATTCAGATCATCCACTTCACAATTGGACCACAGGAGCTGGAAGAGATGTGGTTCCACTAAATGTGACCAGGCACTACTATTTCGTAAGTGGCAATGGCTTCTGCTTCAGTGGCATGAAGATGGCTGTTCAGGTTGAAAAACTACCTCCACCTCCCAAGGCTGCTCCGGTGGCGAGCAAGGGCAGCACTCCATTAGCGCCTGTCTTTAGATCCCAATTTGTGTTGCCAGCCATTTTTGCTATTGGTGCAGTTTGGGATGCATTTCTTAGGTTCTGCTAG

Protein Analysis

178

Amino Acids

19.6

Weight (kDa)

9.07

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 43 - 125 1.2e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 44
AclWI GGATC 1 cut(s) 462
AcuI CTGAAG 1 cut(s) 349
AgsI TTSAA 1 cut(s) 395
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 3 cut(s) 38, 95, 296
AluI AGCT 3 cut(s) 38, 95, 296
Alw26I GTCTC 2 cut(s) 135, 245
AlwI GGATC 1 cut(s) 462
AlwNI CAGNNNCTG 1 cut(s) 296
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 3 cut(s) 95, 419, 441
AspLEI GCGC 2 cut(s) 160, 457
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 2 cut(s) 22, 244
AvaII GGWCC 1 cut(s) 285
BbvCI CCTCAGC 1 cut(s) 91
BbvI GCAGC 3 cut(s) 82, 406, 453
BccI CCATC 1 cut(s) 373
BciT130I CCWGG 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 135, 245
BfaI CTAG 2 cut(s) 227, 535
BfoI RGCGCY 1 cut(s) 458
BisI GCNGC 4 cut(s) 45, 96, 420, 442
BlsI GCNGC 4 cut(s) 46, 97, 421, 443
Bme1390I CCNGG 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 3 cut(s) 81, 212, 312
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 505
BplI GAGNNNNNCTC 2 cut(s) 174, 206
Bpu10I CCTNAGC 1 cut(s) 91
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 63, 414
BsaWI WCCGGW 1 cut(s) 424
Bse3DI GCAATG 1 cut(s) 358
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 63, 414
BseGI GGATG 2 cut(s) 268, 520
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 105
BseXI GCAGC 3 cut(s) 82, 406, 453
BsgI GTGCAG 1 cut(s) 525
BshFI GGCC 1 cut(s) 62
BsiSI CCGG 1 cut(s) 425
BsmAI GTCTC 2 cut(s) 135, 245
BsnI GGCC 1 cut(s) 62
Bso31I GGTCTC 1 cut(s) 135
Bsp143I GATC 2 cut(s) 265, 467
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 104
BspLI GGNNCC 3 cut(s) 81, 212, 312
BspPI GGATC 1 cut(s) 462
BspTNI GGTCTC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 358
BssECI CCNNGG 2 cut(s) 63, 414
BssMI GATC 2 cut(s) 265, 467
BssT1I CCWWGG 2 cut(s) 63, 414
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 433, 486
BstDEI CTNAG 2 cut(s) 91, 524
BstF5I GGATG 2 cut(s) 268, 520
BstH2I RGCGCY 1 cut(s) 458
BstHHI GCGC 2 cut(s) 160, 457
BstKTI GATC 2 cut(s) 268, 470
BstMAI GTCTC 2 cut(s) 135, 245
BstMBI GATC 2 cut(s) 265, 467
BstMWI GCNNNNNNNGC 8 cut(s) 44, 95, 166, 369, 428, 441, 494, 503
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 326
BstV1I GCAGC 3 cut(s) 82, 406, 453
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 1 cut(s) 62
BtsCI GGATG 2 cut(s) 268, 520
BtsIMutI CAGTG 1 cut(s) 373
Cac8I GCNNGC 2 cut(s) 433, 486
CaiI CAGNNNCTG 1 cut(s) 296
CfoI GCGC 2 cut(s) 160, 457
Cfr13I GGNCC 1 cut(s) 285
CviAII CATG 2 cut(s) 255, 373
DdeI CTNAG 2 cut(s) 91, 524
DpnI GATC 2 cut(s) 267, 469
DpnII GATC 2 cut(s) 265, 467
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Eco130I CCWWGG 2 cut(s) 63, 414
Eco31I GGTCTC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 2 cut(s) 63, 414
EcoT22I ATGCAT 1 cut(s) 520
ErhI CCWWGG 2 cut(s) 63, 414
FaeI CATG 2 cut(s) 258, 376
FaiI YATR 4 cut(s) 204, 249, 256, 374
FatI CATG 2 cut(s) 254, 372
Fnu4HI GCNGC 4 cut(s) 45, 96, 420, 442
FokI GGATG 2 cut(s) 255, 527
Fsp4HI GCNGC 4 cut(s) 45, 96, 420, 442
FspBI CTAG 2 cut(s) 227, 535
GlaI GCGC 2 cut(s) 159, 456
GluI GCNGC 4 cut(s) 45, 96, 420, 442
HaeII RGCGCY 1 cut(s) 458
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 425
HhaI GCGC 2 cut(s) 160, 457
Hin1II CATG 2 cut(s) 258, 376
Hin6I GCGC 2 cut(s) 158, 455
HinP1I GCGC 2 cut(s) 158, 455
HpaII CCGG 1 cut(s) 425
HphI GGTGA 2 cut(s) 22, 244
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 9
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 258, 506, 518
HpyF10VI GCNNNNNNNGC 8 cut(s) 44, 95, 166, 369, 428, 441, 494, 503
HpyF3I CTNAG 2 cut(s) 91, 524
Hsp92II CATG 2 cut(s) 258, 376
HspAI GCGC 2 cut(s) 158, 455
Kzo9I GATC 2 cut(s) 265, 467
LmnI GCTCC 2 cut(s) 293, 427
Lsp1109I GCAGC 3 cut(s) 82, 406, 453
LweI GCATC 1 cut(s) 505
MaeI CTAG 2 cut(s) 227, 535
MaeIII GTNAC 2 cut(s) 116, 322
MalI GATC 2 cut(s) 267, 469
MboI GATC 2 cut(s) 265, 467
MboII GAAGA 2 cut(s) 312, 388
MfeI CAATTG 1 cut(s) 280
MflI RGATCY 1 cut(s) 467
MluCI AATT 5 cut(s) 136, 150, 259, 280, 473
MnlI CCTC 5 cut(s) 100, 107, 223, 414, 420
Mph1103I ATGCAT 1 cut(s) 520
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 377
MspA1I CMGCKG 2 cut(s) 38, 95
MspI CCGG 1 cut(s) 425
MspR9I CCNGG 1 cut(s) 328
MunI CAATTG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 328
MwoI GCNNNNNNNGC 8 cut(s) 44, 95, 166, 369, 428, 441, 494, 503
NdeII GATC 2 cut(s) 265, 467
NlaIII CATG 2 cut(s) 258, 376
NlaIV GGNNCC 3 cut(s) 81, 212, 312
NmuCI GTSAC 1 cut(s) 322
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 1 cut(s) 258
PkrI GCNGC 4 cut(s) 46, 97, 421, 443
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 3 cut(s) 81, 212, 312
PspPI GGNCC 1 cut(s) 285
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 1 cut(s) 467
PvuII CAGCTG 2 cut(s) 38, 95
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 4 cut(s) 45, 96, 420, 442
Sau3AI GATC 2 cut(s) 265, 467
Sau96I GGNCC 1 cut(s) 285
ScrFI CCNGG 1 cut(s) 328
SetI ASST 9 cut(s) 40, 97, 118, 234, 298, 393, 406, 412, 530
SfaNI GCATC 1 cut(s) 505
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 377
Sse9I AATT 5 cut(s) 136, 150, 259, 280, 473
SsiI CCGC 1 cut(s) 44
SspMI CTAG 2 cut(s) 227, 535
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 2 cut(s) 63, 414
TaaI ACNGT 1 cut(s) 109
TasI AATT 5 cut(s) 136, 150, 259, 280, 473
TauI GCSGC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 3 cut(s) 95, 419, 441
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 389
TspRI CASTG 1 cut(s) 373
VpaK11BI GGWCC 1 cut(s) 285
XceI RCATGY 1 cut(s) 258
XcmI CCANNNNNNNNNTGG 1 cut(s) 279
XspI CTAG 2 cut(s) 227, 535
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.