RchiOBHm_Chr5g0041861

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000188
Physical Location & Seq
Forward (+)
36740152 .. 36741546
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32028

Sequence Viewer

Length: 1395 bp
ATGGGTAGCAGTGATATAGAAAAGGGTAAAGTGGATGAAAGCGTTTCAATTCATCAAGACCGGAGAGGTATGACTATTGAACAATGGAAACACACCTTCAATTATGAGCTTTTGGAGGCCAAATCATCACCTGTGCCTGTTTCATGTTGCATCTTCAAAGTTCCTGAGGTGCTACGAAGACAAGAAAAGGAGCCATACGAACCTGACGTAGTCTCAATCGGTCCCTTTCACCGAGGTGTTGATAAATTTCAACTCGTGGAAAATGTGAAAAAATGGTATTTAAACTGTCTTTTCTTGCCCCTGCGCCAGCGCCAGCGCCAGACAGTATTGAACATGGATAGCTTGATTGAAAGCATCAGGGGACAGGTAATACGCGCCCGGGGTTATTATTCAGACCCATGCTATCATCTTGACCAAAACGACTTCATAGAGATGCTCATACTCGATGGTTGTTTCTTAATAGAATTATTTCGGAAGGCACCTTCTGAGCATGCAGATCGACAAGATAAAGACGACCCTATCTTCAACATGCCTTGTATGCTCGAATACCTGTACCATGATCTTCTGTTGCTAGAAAATCAGCTACCTTGGTTTGTGCTCGAGTCTATCTATAACCTAATTGAGGATGGTAGCCCTATAGCACCCCTCAGTCAAGTAGTAATAGACTTCTTCAAAAATTCAGTGGCTGAACCTAAAATTTTTAGCTATCCCAATCCCAAGTCTCCCAAGGTTGAGATTCTTCACATACTTGATCTGATAAGAACTTCCCTCGTTCATGACCATCTGGAACATGCAAACCAACAGAAGACCCCGGCATCAAAGTTGGTAAACCACTTGCCACAGAGGATACCTAGTGCTGCTGCTCTTTCAGAGGCGGGAGTTAAATTTAGAGAGGGCCCCTCAGGTTGCATATTGAACATAACGTTCAAAGGTGGCGTTTTCACCATTCCTCCTCTGGCTATCGATGAAAGGACAGGTCCTATGTTCAGGAACCTTATGGCCTACGAACAGTGTTATGGCAGTTGCAAGCACATGATAACATCCTACGCGGTTTTGATGGATAACCTCATCGATACGAACAAGGATGTGGATCTTCTATGTGAAAAACATATACTAGCCAACTGGTTGAGTGCCGATGATGCTTCGAAGTTCTTCAACGATCTATACAATGACACCACAGTCATTGACTATGTCTACAAGGGAGTTTGCGATGAAGTGCATTCATATCGCAAAGTACCATGGCACAAGTGGAGAAAGAAATTGAAACGTGATTATTTTGAAACACCATGGTCTACTACCTCTTTTATTGCAGCTTTTGTCCTCCTGGTCCTTACCTTCTTGCAGACCATATACACACTCGAACCGTACTATCATCCCCGGCCCGCTCATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

464

Amino Acids

53.79

Weight (kDa)

5.95

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 51 - 444 2.9e-112 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1178
AccB1I GGYRCC 1 cut(s) 478
AccBSI CCGCTC 1 cut(s) 1385
AccI GTMKAC 2 cut(s) 1194, 1292
AccII CGCG 2 cut(s) 375, 1049
AciI CCGC 3 cut(s) 875, 1049, 1383
AclI AACGTT 1 cut(s) 923
AclWI GGATC 1 cut(s) 1098
AcsI RAATTY 4 cut(s) 245, 676, 696, 884
AfaI GTAC 3 cut(s) 554, 1236, 1367
AfiI CCNNNNNNNGG 1 cut(s) 622
AjnI CCWGG 1 cut(s) 1323
AleI CACNNNNGTG 1 cut(s) 234
AluBI AGCT 5 cut(s) 109, 342, 583, 705, 1313
AluI AGCT 5 cut(s) 109, 342, 583, 705, 1313
Alw21I GWGCWC 1 cut(s) 600
Alw26I GTCTC 2 cut(s) 217, 726
AlwI GGATC 1 cut(s) 1098
AlwNI CAGNNNCTG 1 cut(s) 686
Ama87I CYCGRG 2 cut(s) 378, 599
AoxI GGCC 4 cut(s) 117, 895, 999, 1379
ApaI GGGCCC 1 cut(s) 899
ApeKI GCWGC 3 cut(s) 857, 860, 1310
ApoI RAATTY 4 cut(s) 245, 676, 696, 884
Asp700I GAANNNNTTC 2 cut(s) 468, 1151
AspLEI GCGC 4 cut(s) 306, 312, 318, 377
AspS9I GGNCC 6 cut(s) 221, 895, 896, 977, 1327, 1380
AsuC2I CCSGG 4 cut(s) 379, 380, 812, 1378
AsuHPI GGTGA 3 cut(s) 120, 221, 934
AsuII TTCGAA 1 cut(s) 1145
AvaI CYCGRG 2 cut(s) 378, 599
AvaII GGWCC 3 cut(s) 221, 977, 1327
AxyI CCTNAGG 2 cut(s) 165, 901
BaeGI GKGCMC 1 cut(s) 899
BanI GGYRCC 1 cut(s) 478
BanII GRGCYC 1 cut(s) 899
BauI CACGAG 1 cut(s) 254
BbsI GAAGAC 2 cut(s) 184, 812
Bbv12I GWGCWC 1 cut(s) 600
BbvI GCAGC 3 cut(s) 844, 847, 1322
BccI CCATC 4 cut(s) 440, 620, 789, 1051
BcgI CGANNNNNNTGC 4 cut(s) 479, 513, 1208, 1242
BciT130I CCWGG 1 cut(s) 1325
BciVI GTATCC 1 cut(s) 840
BcnI CCSGG 4 cut(s) 379, 380, 812, 1378
BcoDI GTCTC 2 cut(s) 217, 726
BfaI CTAG 3 cut(s) 572, 852, 1115
BfmI CTRYAG 1 cut(s) 636
BfoI RGCGCY 2 cut(s) 313, 319
BfuI GTATCC 1 cut(s) 840
BisI GCNGC 3 cut(s) 858, 861, 1311
BlsI GCNGC 3 cut(s) 859, 862, 1312
Bme1390I CCNGG 5 cut(s) 379, 380, 812, 1325, 1378
Bme18I GGWCC 3 cut(s) 221, 977, 1327
BmeT110I CYCGRG 2 cut(s) 378, 599
BmgT120I GGNCC 6 cut(s) 221, 895, 896, 977, 1327, 1380
BmiI GGNNCC 6 cut(s) 192, 223, 480, 897, 898, 992
BmrFI CCNGG 5 cut(s) 379, 380, 812, 1325, 1378
BmsI GCATC 5 cut(s) 159, 363, 423, 824, 1129
BpiI GAAGAC 2 cut(s) 184, 812
BplI GAGNNNNNCTC 2 cut(s) 884, 916
Bpu14I TTCGAA 1 cut(s) 1145
BpuMI CCSGG 4 cut(s) 379, 380, 812, 1378
Bsa29I ATCGAT 2 cut(s) 963, 1071
BsaBI GATNNNNATC 1 cut(s) 1089
BsaJI CCNNGG 9 cut(s) 232, 378, 379, 587, 726, 810, 1238, 1286, 1376
BsaWI WCCGGW 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 934, 964
Bsc4I CCNNNNNNNGG 1 cut(s) 622
Bse1I ACTGG 1 cut(s) 1127
Bse21I CCTNAGG 2 cut(s) 165, 901
Bse8I GATNNNNATC 1 cut(s) 1089
BseBI CCWGG 1 cut(s) 1325
BseCI ATCGAT 2 cut(s) 963, 1071
BseDI CCNNGG 9 cut(s) 232, 378, 379, 587, 726, 810, 1238, 1286, 1376
BseGI GGATG 5 cut(s) 40, 631, 1040, 1090, 1372
BseJI GATNNNNATC 1 cut(s) 1089
BseLI CCNNNNNNNGG 1 cut(s) 622
BseMII CTCAG 4 cut(s) 156, 477, 661, 915
BseNI ACTGG 1 cut(s) 1127
BseRI GAGGAG 1 cut(s) 942
BseSI GKGCMC 1 cut(s) 899
BseXI GCAGC 3 cut(s) 844, 847, 1322
Bsh1236I CGCG 2 cut(s) 375, 1049
BshFI GGCC 4 cut(s) 119, 897, 1001, 1381
BshNI GGYRCC 1 cut(s) 478
BshVI ATCGAT 2 cut(s) 963, 1071
BsiHKAI GWGCWC 1 cut(s) 600
BsiHKCI CYCGRG 2 cut(s) 378, 599
BsiSI CCGG 4 cut(s) 61, 379, 812, 1378
BslFI GGGAC 2 cut(s) 207, 375
BslI CCNNNNNNNGG 1 cut(s) 622
BsmAI GTCTC 2 cut(s) 217, 726
BsmFI GGGAC 2 cut(s) 207, 375
BsmI GAATGC 1 cut(s) 1219
BsnI GGCC 4 cut(s) 119, 897, 1001, 1381
BsoBI CYCGRG 2 cut(s) 378, 599
Bsp119I TTCGAA 1 cut(s) 1145
Bsp120I GGGCCC 1 cut(s) 895
Bsp1286I GDGCHC 2 cut(s) 600, 899
Bsp143I GATC 5 cut(s) 496, 559, 751, 1090, 1159
Bsp19I CCATGG 2 cut(s) 1238, 1286
BspACI CCGC 3 cut(s) 875, 1049, 1383
BspANI GGCC 4 cut(s) 119, 897, 1001, 1381
BspCNI CTCAG 4 cut(s) 157, 478, 660, 914
BspDI ATCGAT 2 cut(s) 963, 1071
BspFNI CGCG 2 cut(s) 375, 1049
BspHI TCATGA 2 cut(s) 775, 1387
BspLI GGNNCC 6 cut(s) 192, 223, 480, 897, 898, 992
BspPI GGATC 1 cut(s) 1098
BspT104I TTCGAA 1 cut(s) 1145
BspT107I GGYRCC 1 cut(s) 478
BsrBI CCGCTC 1 cut(s) 1385
BsrI ACTGG 1 cut(s) 1127
BssECI CCNNGG 9 cut(s) 232, 378, 379, 587, 726, 810, 1238, 1286, 1376
BssMI GATC 5 cut(s) 496, 559, 751, 1090, 1159
BssSI CACGAG 1 cut(s) 254
BssT1I CCWWGG 4 cut(s) 587, 726, 1238, 1286
Bst2BI CACGAG 1 cut(s) 254
Bst2UI CCWGG 1 cut(s) 1325
Bst4CI ACNGT 5 cut(s) 287, 325, 1011, 1180, 1365
BstBI TTCGAA 1 cut(s) 1145
BstC8I GCNNGC 5 cut(s) 308, 314, 492, 1028, 1383
BstDEI CTNAG 4 cut(s) 165, 486, 647, 901
BstDSI CCRYGG 2 cut(s) 1238, 1286
BstENI CCTNNNNNAGG 1 cut(s) 620
BstF5I GGATG 5 cut(s) 40, 631, 1040, 1090, 1372
BstFNI CGCG 2 cut(s) 375, 1049
BstH2I RGCGCY 2 cut(s) 313, 319
BstHHI GCGC 4 cut(s) 306, 312, 318, 377
BstKTI GATC 5 cut(s) 499, 562, 754, 1093, 1162
BstMAI GTCTC 2 cut(s) 217, 726
BstMBI GATC 5 cut(s) 496, 559, 751, 1090, 1159
BstMWI GCNNNNNNNGC 2 cut(s) 538, 1139
BstNI CCWGG 1 cut(s) 1325
BstNSI RCATGY 3 cut(s) 494, 532, 794
BstSCI CCNGG 5 cut(s) 377, 378, 810, 1323, 1376
BstSFI CTRYAG 1 cut(s) 636
BstSLI GKGCMC 1 cut(s) 899
BstUI CGCG 2 cut(s) 375, 1049
BstV1I GCAGC 3 cut(s) 844, 847, 1322
BstV2I GAAGAC 2 cut(s) 184, 812
BstX2I RGATCY 1 cut(s) 1090
BstYI RGATCY 1 cut(s) 1090
Bsu15I ATCGAT 2 cut(s) 963, 1071
Bsu36I CCTNAGG 2 cut(s) 165, 901
BsuI GTATCC 1 cut(s) 840
BsuRI GGCC 4 cut(s) 119, 897, 1001, 1381
BsuTUI ATCGAT 2 cut(s) 963, 1071
BtgI CCRYGG 2 cut(s) 1238, 1286
BtgZI GCGATG 1 cut(s) 1224
BtsCI GGATG 5 cut(s) 40, 631, 1040, 1090, 1372
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 3 cut(s) 16, 687, 1016
Cac8I GCNNGC 5 cut(s) 308, 314, 492, 1028, 1383
CaiI CAGNNNCTG 1 cut(s) 686
CciI TCATGA 2 cut(s) 775, 1387
CfoI GCGC 4 cut(s) 306, 312, 318, 377
Cfr13I GGNCC 6 cut(s) 221, 895, 896, 977, 1327, 1380
Cfr9I CCCGGG 1 cut(s) 378
ClaI ATCGAT 2 cut(s) 963, 1071
Csp6I GTAC 3 cut(s) 553, 1235, 1366
CspCI CAANNNNNGTGG 2 cut(s) 1165, 1200
CviQI GTAC 3 cut(s) 553, 1235, 1366
DdeI CTNAG 4 cut(s) 165, 486, 647, 901
DpnI GATC 5 cut(s) 498, 561, 753, 1092, 1161
DpnII GATC 5 cut(s) 496, 559, 751, 1090, 1159
DraI TTTAAA 1 cut(s) 282
DrdI GACNNNNNNGTC 1 cut(s) 1178
DseDI GACNNNNNNGTC 1 cut(s) 1178
Eco130I CCWWGG 4 cut(s) 587, 726, 1238, 1286
Eco24I GRGCYC 1 cut(s) 899
Eco47I GGWCC 3 cut(s) 221, 977, 1327
Eco81I CCTNAGG 2 cut(s) 165, 901
Eco88I CYCGRG 2 cut(s) 378, 599
EcoNI CCTNNNNNAGG 1 cut(s) 620
EcoO109I RGGNCCY 3 cut(s) 895, 896, 977
EcoRII CCWGG 1 cut(s) 1323
EcoT14I CCWWGG 4 cut(s) 587, 726, 1238, 1286
EcoT38I GRGCYC 1 cut(s) 899
ErhI CCWWGG 4 cut(s) 587, 726, 1238, 1286
FaqI GGGAC 2 cut(s) 207, 375
FauI CCCGC 2 cut(s) 868, 1390
FblI GTMKAC 2 cut(s) 1194, 1292
Fnu4HI GCNGC 3 cut(s) 858, 861, 1311
FokI GGATG 5 cut(s) 47, 638, 1027, 1097, 1359
FriOI GRGCYC 1 cut(s) 899
Fsp4HI GCNGC 3 cut(s) 858, 861, 1311
FspBI CTAG 3 cut(s) 572, 852, 1115
GlaI GCGC 4 cut(s) 305, 311, 317, 376
GluI GCNGC 3 cut(s) 858, 861, 1311
HaeII RGCGCY 2 cut(s) 313, 319
HaeIII GGCC 4 cut(s) 119, 897, 1001, 1381
HapII CCGG 4 cut(s) 61, 379, 812, 1378
HhaI GCGC 4 cut(s) 306, 312, 318, 377
Hin6I GCGC 4 cut(s) 304, 310, 316, 375
HinP1I GCGC 4 cut(s) 304, 310, 316, 375
HinfI GANTC 2 cut(s) 602, 736
HpaII CCGG 4 cut(s) 61, 379, 812, 1378
HphI GGTGA 3 cut(s) 120, 221, 934
Hpy166II GTNNAC 3 cut(s) 829, 1195, 1293
Hpy188I TCNGA 5 cut(s) 394, 474, 487, 756, 871
Hpy188III TCNNGA 7 cut(s) 56, 164, 410, 776, 785, 988, 1388
Hpy8I GTNNAC 3 cut(s) 829, 1195, 1293
HpyAV CCTTC 4 cut(s) 106, 469, 492, 1345
HpyCH4III ACNGT 5 cut(s) 287, 325, 1011, 1180, 1365
HpyCH4IV ACGT 3 cut(s) 207, 923, 1267
HpyCH4V TGCA 8 cut(s) 150, 494, 794, 909, 1026, 1219, 1310, 1342
HpyF10VI GCNNNNNNNGC 2 cut(s) 538, 1139
HpyF3I CTNAG 4 cut(s) 165, 486, 647, 901
HpySE526I ACGT 3 cut(s) 207, 923, 1267
HspAI GCGC 4 cut(s) 304, 310, 316, 375
Kzo9I GATC 5 cut(s) 496, 559, 751, 1090, 1159
LmnI GCTCC 1 cut(s) 190
Lsp1109I GCAGC 3 cut(s) 844, 847, 1322
LweI GCATC 5 cut(s) 159, 363, 423, 824, 1129
MaeI CTAG 3 cut(s) 572, 852, 1115
MaeII ACGT 3 cut(s) 207, 923, 1267
MalI GATC 5 cut(s) 498, 561, 753, 1092, 1161
MbiI CCGCTC 1 cut(s) 1385
MboI GATC 5 cut(s) 496, 559, 751, 1090, 1159
MboII GAAGA 9 cut(s) 145, 189, 514, 554, 661, 731, 817, 1085, 1144
MflI RGATCY 1 cut(s) 1090
MhlI GDGCHC 2 cut(s) 600, 899
MluCI AATT 9 cut(s) 48, 100, 245, 464, 618, 676, 696, 884, 1259
MlyI GAGTC 1 cut(s) 611
MroXI GAANNNNTTC 2 cut(s) 468, 1151
MseI TTAA 3 cut(s) 281, 458, 882
MslI CAYNNNNRTG 2 cut(s) 234, 431
MspI CCGG 4 cut(s) 61, 379, 812, 1378
MspR9I CCNGG 5 cut(s) 379, 380, 812, 1325, 1378
Mva1269I GAATGC 1 cut(s) 1219
MvaI CCWGG 1 cut(s) 1325
MvnI CGCG 2 cut(s) 375, 1049
MwoI GCNNNNNNNGC 2 cut(s) 538, 1139
NciI CCSGG 4 cut(s) 379, 380, 812, 1378
NcoI CCATGG 2 cut(s) 1238, 1286
NdeII GATC 5 cut(s) 496, 559, 751, 1090, 1159
NlaIV GGNNCC 6 cut(s) 192, 223, 480, 897, 898, 992
NspI RCATGY 3 cut(s) 494, 532, 794
NspV TTCGAA 1 cut(s) 1145
OliI CACNNNNGTG 1 cut(s) 234
PaeI GCATGC 1 cut(s) 494
PaeR7I CTCGAG 1 cut(s) 599
PagI TCATGA 2 cut(s) 775, 1387
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PctI GAATGC 1 cut(s) 1219
PdmI GAANNNNTTC 2 cut(s) 468, 1151
PfeI GAWTC 1 cut(s) 736
PflFI GACNNNGTC 2 cut(s) 209, 1190
PkrI GCNGC 3 cut(s) 859, 862, 1312
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
PpuMI RGGWCCY 1 cut(s) 977
Psp1406I AACGTT 1 cut(s) 923
Psp5II RGGWCCY 1 cut(s) 977
Psp6I CCWGG 1 cut(s) 1323
PspGI CCWGG 1 cut(s) 1323
PspN4I GGNNCC 6 cut(s) 192, 223, 480, 897, 898, 992
PspOMI GGGCCC 1 cut(s) 895
PspPI GGNCC 6 cut(s) 221, 895, 896, 977, 1327, 1380
PspPPI RGGWCCY 1 cut(s) 977
PspXI VCTCGAGB 1 cut(s) 599
PstNI CAGNNNCTG 1 cut(s) 686
PsuI RGATCY 1 cut(s) 1090
PsyI GACNNNGTC 2 cut(s) 209, 1190
RsaI GTAC 3 cut(s) 554, 1236, 1367
RsaNI GTAC 3 cut(s) 553, 1235, 1366
RseI CAYNNNNRTG 2 cut(s) 234, 431
SaqAI TTAA 3 cut(s) 281, 458, 882
SatI GCNGC 3 cut(s) 858, 861, 1311
Sau3AI GATC 5 cut(s) 496, 559, 751, 1090, 1159
Sau96I GGNCC 6 cut(s) 221, 895, 896, 977, 1327, 1380
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 5 cut(s) 379, 380, 812, 1325, 1378
SduI GDGCHC 2 cut(s) 600, 899
SfaNI GCATC 5 cut(s) 159, 363, 423, 824, 1129
SfcI CTRYAG 1 cut(s) 636
Sfr274I CTCGAG 1 cut(s) 599
SfuI TTCGAA 1 cut(s) 1145
SinI GGWCC 3 cut(s) 221, 977, 1327
SlaI CTCGAG 1 cut(s) 599
SmaI CCCGGG 1 cut(s) 380
SmiMI CAYNNNNRTG 2 cut(s) 234, 431
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
SphI GCATGC 1 cut(s) 494
Sse9I AATT 9 cut(s) 48, 100, 245, 464, 618, 676, 696, 884, 1259
SsiI CCGC 3 cut(s) 875, 1049, 1383
SspMI CTAG 3 cut(s) 572, 852, 1115
StyD4I CCNGG 5 cut(s) 377, 378, 810, 1323, 1376
StyI CCWWGG 4 cut(s) 587, 726, 1238, 1286
TaaI ACNGT 5 cut(s) 287, 325, 1011, 1180, 1365
TaiI ACGT 3 cut(s) 210, 926, 1270
TaqI TCGA 8 cut(s) 444, 499, 543, 600, 963, 1071, 1145, 1359
TaqII GACCGA 1 cut(s) 209
TasI AATT 9 cut(s) 48, 100, 245, 464, 618, 676, 696, 884, 1259
TfiI GAWTC 1 cut(s) 736
Tru1I TTAA 3 cut(s) 281, 458, 882
Tru9I TTAA 3 cut(s) 281, 458, 882
TscAI CASTG 3 cut(s) 16, 687, 1016
TseI GCWGC 3 cut(s) 857, 860, 1310
TspDTI ATGAA 8 cut(s) 41, 51, 132, 415, 764, 981, 1212, 1227
TspMI CCCGGG 1 cut(s) 378
TspRI CASTG 3 cut(s) 16, 687, 1016
Tth111I GACNNNGTC 2 cut(s) 209, 1190
VpaK11BI GGWCC 3 cut(s) 221, 977, 1327
XagI CCTNNNNNAGG 1 cut(s) 620
XapI RAATTY 4 cut(s) 245, 676, 696, 884
XceI RCATGY 3 cut(s) 494, 532, 794
XcmI CCANNNNNNNNNTGG 2 cut(s) 952, 1245
XhoI CTCGAG 1 cut(s) 599
XmaI CCCGGG 1 cut(s) 378
XmiI GTMKAC 2 cut(s) 1194, 1292
XmnI GAANNNNTTC 2 cut(s) 468, 1151
XspI CTAG 3 cut(s) 572, 852, 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.