Rw5G026420

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000188
Physical Location & Seq
Reverse (-)
38201974 .. 38204232
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G026420.1

Sequence Viewer

Length: 1401 bp
ATGTTGGCTTCATTATTCAACTTAGATCAGATGGGTAGCAGTGATATAGAAAAGGGTAAAGAGGATGAAAGCGTTTCAATTCATCAAGACAGGAGAGGTATGACTATTGAACAATGGAAACACACCTTCAATTCTGAGCTTTTGGAGGCCAAATCATCACCTGTGCCTGTTTCATGTTGCATCTTCAAAGTTCCTGAGGTGCTACGAAGACAAGAAAAGGAGGCATACGAACCTGACGTAGTCTCAATCGGTCCCTTTCACCGAGGTGTTGGTAAATTTCAACTCGTGGAAAATGTGAAAAAATGGTATTTAAACTTTCTTTTCTTGCCCCAGCGCCATATAGTACTGAACATGGATAGCTTGATTGAAAGCATCAAGGGACAGGAAATACGTGCCCGGGGTTATTATTCAGACCCATGCTATCATCTTGACCAAAACGACTTCATAGAGATGCTCATACTCGATGGTTGTTTCTTAATAGAATTATTTCGGAAGGCAACTTCTGAGCATCGACAAGATGACAACGACCCTATCTTCAACATGCCTTGTATGCTCGAATACCTGTACCATGATCTTCTGTTGCTAGAAAATCAGCTACCTTGGTTTGTGCTCGAGTCTATCTATAAACTAATTGAGGGTGGTAGCCCTATAAAACACATCAGTCAAGTAGTAATAGACTTCTTCAAAGAGTCAGTGGCTGAAGCTGAAATTTTTAGCTATCCCGATCCCAAGTCTCCCAAACAGCCTGAGATTCTTCACATACTTGATCTGATAAGAACTTCCCTCGTTCAGGAATATCCGGAACATGCAGTCCAAAGGGAGACCCTCCCATCAAAGTTGGTAAACCACTTGCCACAGAGGATACCTAGTGCTGCTGCTCTTTCAGAGGCGGGAGTTAAATTTAGAAAGGGCCCCTCAGGTTGCATATTGAAAATAACGTTCGAAGGTGGCATTTTCACCATTCCTCCTCTGGCTATCGATGAAAGGACAGGTCCTATGTTCAGGAACCTTATGGCCTACGAACAGTGTTATCGCAGTTGCAAGCACATGATAACATCCTACGCGGTTTTGATGGATAACCTCATCGATACGAACACGGATGTGGATCTTCTATGTGAAAAAGATATACTAGCCAACTGGTTGAGTGCCGATGATGCTTCGAAGTTCTTCAATGATCTTTACAATGACACCACAGTCATTGACTATGTCTACAAGGAAGTTTGCGATAAAGTGCATTCATATCGCAGAGTACCATGGCACAAGTGGAGAAAGAAATTGAAACGTGATTATTTTGAAACACCATGGTCTACTATCTCTTTTATTGCAGCTTTGGTCCTCTTGGTCCTTACCTTCTTGCAGACCATATACACACTCCAACCGTACTATCATCCCCGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

466

Amino Acids

54.15

Weight (kDa)

5.64

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 61 - 449 1.3e-113 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1193
AccBSI CCGCTC 1 cut(s) 1395
AccI GTMKAC 2 cut(s) 1209, 1307
AccII CGCG 1 cut(s) 1064
AccIII TCCGGA 1 cut(s) 799
AciI CCGC 3 cut(s) 890, 1064, 1393
AclI AACGTT 1 cut(s) 938
AclWI GGATC 2 cut(s) 719, 1113
AcsI RAATTY 3 cut(s) 275, 708, 899
AcuI CTGAAG 1 cut(s) 720
AfaI GTAC 4 cut(s) 345, 566, 1251, 1382
AfiI CCNNNNNNNGG 1 cut(s) 790
AleI CACNNNNGTG 2 cut(s) 264, 1100
AloI GAACNNNNNNTCC 2 cut(s) 795, 827
AluBI AGCT 6 cut(s) 139, 360, 595, 704, 717, 1328
AluI AGCT 6 cut(s) 139, 360, 595, 704, 717, 1328
Alw21I GWGCWC 1 cut(s) 612
Alw26I GTCTC 3 cut(s) 247, 738, 815
AlwI GGATC 2 cut(s) 719, 1113
AlwNI CAGNNNCTG 1 cut(s) 698
Ama87I CYCGRG 2 cut(s) 396, 611
Aor13HI TCCGGA 1 cut(s) 799
AoxI GGCC 3 cut(s) 147, 910, 1014
ApaI GGGCCC 1 cut(s) 914
ApeKI GCWGC 3 cut(s) 872, 875, 1325
ApoI RAATTY 3 cut(s) 275, 708, 899
Asp700I GAANNNNTTC 2 cut(s) 486, 1166
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 6 cut(s) 251, 910, 911, 992, 1333, 1342
AsuC2I CCSGG 2 cut(s) 397, 398
AsuHPI GGTGA 3 cut(s) 150, 251, 949
AsuII TTCGAA 2 cut(s) 942, 1160
AvaI CYCGRG 2 cut(s) 396, 611
AvaII GGWCC 4 cut(s) 251, 992, 1333, 1342
AxyI CCTNAGG 2 cut(s) 195, 916
BaeGI GKGCMC 2 cut(s) 397, 914
BanII GRGCYC 1 cut(s) 914
BauI CACGAG 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 612
BbvI GCAGC 3 cut(s) 859, 862, 1337
BccI CCATC 4 cut(s) 25, 458, 838, 1066
BcgI CGANNNNNNTGC 2 cut(s) 1223, 1257
BciVI GTATCC 1 cut(s) 855
BcnI CCSGG 2 cut(s) 397, 398
BcoDI GTCTC 3 cut(s) 247, 738, 815
BfaI CTAG 3 cut(s) 584, 867, 1130
BfoI RGCGCY 1 cut(s) 337
BfuI GTATCC 1 cut(s) 855
BisI GCNGC 3 cut(s) 873, 876, 1326
BlsI GCNGC 3 cut(s) 874, 877, 1327
BmcAI AGTACT 1 cut(s) 345
Bme1390I CCNGG 2 cut(s) 397, 398
Bme18I GGWCC 4 cut(s) 251, 992, 1333, 1342
BmeT110I CYCGRG 2 cut(s) 396, 611
BmgT120I GGNCC 6 cut(s) 251, 910, 911, 992, 1333, 1342
BmiI GGNNCC 4 cut(s) 253, 912, 913, 1007
BmrFI CCNGG 2 cut(s) 397, 398
BmsI GCATC 5 cut(s) 189, 381, 441, 517, 1144
BpiI GAAGAC 1 cut(s) 214
Bpu14I TTCGAA 2 cut(s) 942, 1160
BpuMI CCSGG 2 cut(s) 397, 398
Bsa29I ATCGAT 2 cut(s) 978, 1086
BsaAI YACGTR 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 1104
BsaI GGTCTC 1 cut(s) 815
BsaJI CCNNGG 6 cut(s) 262, 396, 397, 599, 1253, 1301
BsaWI WCCGGW 1 cut(s) 799
BsaXI ACNNNNNCTCC 2 cut(s) 949, 979
Bsc4I CCNNNNNNNGG 1 cut(s) 790
Bse1I ACTGG 1 cut(s) 1142
Bse21I CCTNAGG 2 cut(s) 195, 916
Bse8I GATNNNNATC 1 cut(s) 1104
BseAI TCCGGA 1 cut(s) 799
BseCI ATCGAT 2 cut(s) 978, 1086
BseDI CCNNGG 6 cut(s) 262, 396, 397, 599, 1253, 1301
BseGI GGATG 4 cut(s) 70, 1055, 1105, 1387
BseJI GATNNNNATC 1 cut(s) 1104
BseLI CCNNNNNNNGG 1 cut(s) 790
BseMII CTCAG 5 cut(s) 126, 186, 495, 738, 930
BseNI ACTGG 1 cut(s) 1142
BseRI GAGGAG 1 cut(s) 957
BseSI GKGCMC 2 cut(s) 397, 914
BseXI GCAGC 3 cut(s) 859, 862, 1337
BseYI CCCAGC 1 cut(s) 330
Bsh1236I CGCG 1 cut(s) 1064
BshFI GGCC 3 cut(s) 149, 912, 1016
BshVI ATCGAT 2 cut(s) 978, 1086
BsiHKAI GWGCWC 1 cut(s) 612
BsiHKCI CYCGRG 2 cut(s) 396, 611
BsiSI CCGG 2 cut(s) 397, 800
BslFI GGGAC 2 cut(s) 237, 393
BslI CCNNNNNNNGG 1 cut(s) 790
BsmAI GTCTC 3 cut(s) 247, 738, 815
BsmFI GGGAC 2 cut(s) 237, 393
BsmI GAATGC 1 cut(s) 1234
BsnI GGCC 3 cut(s) 149, 912, 1016
Bso31I GGTCTC 1 cut(s) 815
BsoBI CYCGRG 2 cut(s) 396, 611
Bsp119I TTCGAA 2 cut(s) 942, 1160
Bsp120I GGGCCC 1 cut(s) 910
Bsp1286I GDGCHC 3 cut(s) 397, 612, 914
Bsp13I TCCGGA 1 cut(s) 799
Bsp143I GATC 6 cut(s) 25, 571, 724, 766, 1105, 1174
Bsp19I CCATGG 2 cut(s) 1253, 1301
BspACI CCGC 3 cut(s) 890, 1064, 1393
BspANI GGCC 3 cut(s) 149, 912, 1016
BspCNI CTCAG 5 cut(s) 127, 187, 496, 739, 929
BspDI ATCGAT 2 cut(s) 978, 1086
BspEI TCCGGA 1 cut(s) 799
BspFNI CGCG 1 cut(s) 1064
BspHI TCATGA 1 cut(s) 1397
BspLI GGNNCC 4 cut(s) 253, 912, 913, 1007
BspPI GGATC 2 cut(s) 719, 1113
BspT104I TTCGAA 2 cut(s) 942, 1160
BspTNI GGTCTC 1 cut(s) 815
BsrBI CCGCTC 1 cut(s) 1395
BsrI ACTGG 1 cut(s) 1142
BssECI CCNNGG 6 cut(s) 262, 396, 397, 599, 1253, 1301
BssMI GATC 6 cut(s) 25, 571, 724, 766, 1105, 1174
BssSI CACGAG 1 cut(s) 284
BssT1I CCWWGG 3 cut(s) 599, 1253, 1301
Bst2BI CACGAG 1 cut(s) 284
Bst4CI ACNGT 3 cut(s) 1026, 1195, 1380
BstBAI YACGTR 1 cut(s) 392
BstBI TTCGAA 2 cut(s) 942, 1160
BstC8I GCNNGC 1 cut(s) 1043
BstDEI CTNAG 6 cut(s) 22, 135, 195, 504, 747, 916
BstDSI CCRYGG 2 cut(s) 1253, 1301
BstENI CCTNNNNNAGG 1 cut(s) 788
BstF5I GGATG 4 cut(s) 70, 1055, 1105, 1387
BstFNI CGCG 1 cut(s) 1064
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 6 cut(s) 28, 574, 727, 769, 1108, 1177
BstMAI GTCTC 3 cut(s) 247, 738, 815
BstMBI GATC 6 cut(s) 25, 571, 724, 766, 1105, 1174
BstMWI GCNNNNNNNGC 2 cut(s) 550, 1154
BstNSI RCATGY 2 cut(s) 544, 809
BstSCI CCNGG 2 cut(s) 395, 396
BstSLI GKGCMC 2 cut(s) 397, 914
BstUI CGCG 1 cut(s) 1064
BstV1I GCAGC 3 cut(s) 859, 862, 1337
BstV2I GAAGAC 1 cut(s) 214
BstX2I RGATCY 1 cut(s) 1105
BstYI RGATCY 1 cut(s) 1105
Bsu15I ATCGAT 2 cut(s) 978, 1086
Bsu36I CCTNAGG 2 cut(s) 195, 916
BsuI GTATCC 1 cut(s) 855
BsuRI GGCC 3 cut(s) 149, 912, 1016
BsuTUI ATCGAT 2 cut(s) 978, 1086
BtgI CCRYGG 2 cut(s) 1253, 1301
BtsCI GGATG 4 cut(s) 70, 1055, 1105, 1387
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 3 cut(s) 46, 699, 1031
Cac8I GCNNGC 1 cut(s) 1043
CaiI CAGNNNCTG 1 cut(s) 698
CciI TCATGA 1 cut(s) 1397
CfoI GCGC 1 cut(s) 336
Cfr13I GGNCC 6 cut(s) 251, 910, 911, 992, 1333, 1342
Cfr9I CCCGGG 1 cut(s) 396
ClaI ATCGAT 2 cut(s) 978, 1086
Csp6I GTAC 4 cut(s) 344, 565, 1250, 1381
CspCI CAANNNNNGTGG 2 cut(s) 1180, 1215
CviQI GTAC 4 cut(s) 344, 565, 1250, 1381
DdeI CTNAG 6 cut(s) 22, 135, 195, 504, 747, 916
DpnI GATC 6 cut(s) 27, 573, 726, 768, 1107, 1176
DpnII GATC 6 cut(s) 25, 571, 724, 766, 1105, 1174
DraI TTTAAA 1 cut(s) 312
DrdI GACNNNNNNGTC 1 cut(s) 1193
DseDI GACNNNNNNGTC 1 cut(s) 1193
Eco130I CCWWGG 3 cut(s) 599, 1253, 1301
Eco24I GRGCYC 1 cut(s) 914
Eco31I GGTCTC 1 cut(s) 815
Eco47I GGWCC 4 cut(s) 251, 992, 1333, 1342
Eco57I CTGAAG 1 cut(s) 720
Eco81I CCTNAGG 2 cut(s) 195, 916
Eco88I CYCGRG 2 cut(s) 396, 611
EcoNI CCTNNNNNAGG 1 cut(s) 788
EcoO109I RGGNCCY 3 cut(s) 910, 911, 992
EcoT14I CCWWGG 3 cut(s) 599, 1253, 1301
EcoT38I GRGCYC 1 cut(s) 914
ErhI CCWWGG 3 cut(s) 599, 1253, 1301
FaqI GGGAC 2 cut(s) 237, 393
FauI CCCGC 1 cut(s) 883
FblI GTMKAC 2 cut(s) 1209, 1307
Fnu4HI GCNGC 3 cut(s) 873, 876, 1326
FokI GGATG 4 cut(s) 77, 1042, 1112, 1374
FriOI GRGCYC 1 cut(s) 914
Fsp4HI GCNGC 3 cut(s) 873, 876, 1326
FspBI CTAG 3 cut(s) 584, 867, 1130
GlaI GCGC 1 cut(s) 335
GluI GCNGC 3 cut(s) 873, 876, 1326
GsaI CCCAGC 1 cut(s) 334
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 3 cut(s) 149, 912, 1016
HapII CCGG 2 cut(s) 397, 800
HhaI GCGC 1 cut(s) 336
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HinfI GANTC 3 cut(s) 614, 689, 751
HpaII CCGG 2 cut(s) 397, 800
HphI GGTGA 3 cut(s) 150, 251, 949
Hpy166II GTNNAC 3 cut(s) 844, 1210, 1308
Hpy188I TCNGA 7 cut(s) 30, 136, 412, 492, 505, 771, 886
Hpy188III TCNNGA 8 cut(s) 86, 194, 428, 722, 791, 800, 1003, 1398
Hpy8I GTNNAC 3 cut(s) 844, 1210, 1308
HpyAV CCTTC 4 cut(s) 136, 487, 938, 1360
HpyCH4III ACNGT 3 cut(s) 1026, 1195, 1380
HpyCH4IV ACGT 4 cut(s) 237, 391, 938, 1282
HpyCH4V TGCA 7 cut(s) 180, 809, 924, 1041, 1234, 1325, 1357
HpyF10VI GCNNNNNNNGC 2 cut(s) 550, 1154
HpyF3I CTNAG 6 cut(s) 22, 135, 195, 504, 747, 916
HpySE526I ACGT 4 cut(s) 237, 391, 938, 1282
HspAI GCGC 1 cut(s) 334
Kpn2I TCCGGA 1 cut(s) 799
Kzo9I GATC 6 cut(s) 25, 571, 724, 766, 1105, 1174
Lsp1109I GCAGC 3 cut(s) 859, 862, 1337
LweI GCATC 5 cut(s) 189, 381, 441, 517, 1144
MaeI CTAG 3 cut(s) 584, 867, 1130
MaeII ACGT 4 cut(s) 237, 391, 938, 1282
MalI GATC 6 cut(s) 27, 573, 726, 768, 1107, 1176
MbiI CCGCTC 1 cut(s) 1395
MboI GATC 6 cut(s) 25, 571, 724, 766, 1105, 1174
MboII GAAGA 8 cut(s) 175, 219, 526, 566, 673, 746, 1100, 1159
MflI RGATCY 1 cut(s) 1105
MhlI GDGCHC 3 cut(s) 397, 612, 914
MluCI AATT 8 cut(s) 78, 130, 275, 482, 630, 708, 899, 1274
MlyI GAGTC 2 cut(s) 623, 698
MmeI TCCRAC 1 cut(s) 1399
MroI TCCGGA 1 cut(s) 799
MroXI GAANNNNTTC 2 cut(s) 486, 1166
MseI TTAA 3 cut(s) 311, 476, 897
MslI CAYNNNNRTG 3 cut(s) 264, 449, 1100
MspI CCGG 2 cut(s) 397, 800
MspR9I CCNGG 2 cut(s) 397, 398
Mva1269I GAATGC 1 cut(s) 1234
MvnI CGCG 1 cut(s) 1064
MwoI GCNNNNNNNGC 2 cut(s) 550, 1154
NciI CCSGG 2 cut(s) 397, 398
NcoI CCATGG 2 cut(s) 1253, 1301
NdeII GATC 6 cut(s) 25, 571, 724, 766, 1105, 1174
NlaIV GGNNCC 4 cut(s) 253, 912, 913, 1007
NspI RCATGY 2 cut(s) 544, 809
NspV TTCGAA 2 cut(s) 942, 1160
OliI CACNNNNGTG 2 cut(s) 264, 1100
PaeR7I CTCGAG 1 cut(s) 611
PagI TCATGA 1 cut(s) 1397
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 1 cut(s) 1234
PdmI GAANNNNTTC 2 cut(s) 486, 1166
PfeI GAWTC 1 cut(s) 751
PflFI GACNNNGTC 2 cut(s) 239, 1205
PkrI GCNGC 3 cut(s) 874, 877, 1327
PleI GAGTC 2 cut(s) 622, 697
PpsI GAGTC 2 cut(s) 622, 697
Ppu21I YACGTR 1 cut(s) 392
PpuMI RGGWCCY 1 cut(s) 992
Psp1406I AACGTT 1 cut(s) 938
Psp5II RGGWCCY 1 cut(s) 992
PspFI CCCAGC 1 cut(s) 330
PspN4I GGNNCC 4 cut(s) 253, 912, 913, 1007
PspOMI GGGCCC 1 cut(s) 910
PspPI GGNCC 6 cut(s) 251, 910, 911, 992, 1333, 1342
PspPPI RGGWCCY 1 cut(s) 992
PspXI VCTCGAGB 1 cut(s) 611
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 1 cut(s) 1105
PsyI GACNNNGTC 2 cut(s) 239, 1205
RsaI GTAC 4 cut(s) 345, 566, 1251, 1382
RsaNI GTAC 4 cut(s) 344, 565, 1250, 1381
RseI CAYNNNNRTG 3 cut(s) 264, 449, 1100
SaqAI TTAA 3 cut(s) 311, 476, 897
SatI GCNGC 3 cut(s) 873, 876, 1326
Sau3AI GATC 6 cut(s) 25, 571, 724, 766, 1105, 1174
Sau96I GGNCC 6 cut(s) 251, 910, 911, 992, 1333, 1342
ScaI AGTACT 1 cut(s) 345
SchI GAGTC 2 cut(s) 623, 698
ScrFI CCNGG 2 cut(s) 397, 398
SduI GDGCHC 3 cut(s) 397, 612, 914
SfaNI GCATC 5 cut(s) 189, 381, 441, 517, 1144
Sfr274I CTCGAG 1 cut(s) 611
SfuI TTCGAA 2 cut(s) 942, 1160
SinI GGWCC 4 cut(s) 251, 992, 1333, 1342
SlaI CTCGAG 1 cut(s) 611
SmaI CCCGGG 1 cut(s) 398
SmiMI CAYNNNNRTG 3 cut(s) 264, 449, 1100
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
Sse9I AATT 8 cut(s) 78, 130, 275, 482, 630, 708, 899, 1274
SsiI CCGC 3 cut(s) 890, 1064, 1393
SspMI CTAG 3 cut(s) 584, 867, 1130
StyD4I CCNGG 2 cut(s) 395, 396
StyI CCWWGG 3 cut(s) 599, 1253, 1301
TaaI ACNGT 3 cut(s) 1026, 1195, 1380
TaiI ACGT 4 cut(s) 240, 394, 941, 1285
TaqI TCGA 8 cut(s) 462, 511, 555, 612, 942, 978, 1086, 1160
TaqII GACCGA 1 cut(s) 239
TasI AATT 8 cut(s) 78, 130, 275, 482, 630, 708, 899, 1274
TatI WGTACW 1 cut(s) 343
TfiI GAWTC 1 cut(s) 751
Tru1I TTAA 3 cut(s) 311, 476, 897
Tru9I TTAA 3 cut(s) 311, 476, 897
TscAI CASTG 3 cut(s) 46, 699, 1031
TseI GCWGC 3 cut(s) 872, 875, 1325
TspDTI ATGAA 6 cut(s) 71, 81, 162, 433, 996, 1227
TspGWI ACGGA 1 cut(s) 1112
TspMI CCCGGG 1 cut(s) 396
TspRI CASTG 3 cut(s) 46, 699, 1031
Tth111I GACNNNGTC 2 cut(s) 239, 1205
VpaK11BI GGWCC 4 cut(s) 251, 992, 1333, 1342
XagI CCTNNNNNAGG 1 cut(s) 788
XapI RAATTY 3 cut(s) 275, 708, 899
XceI RCATGY 2 cut(s) 544, 809
XcmI CCANNNNNNNNNTGG 2 cut(s) 967, 1260
XhoI CTCGAG 1 cut(s) 611
XmaI CCCGGG 1 cut(s) 396
XmiI GTMKAC 2 cut(s) 1209, 1307
XmnI GAANNNNTTC 2 cut(s) 486, 1166
XspI CTAG 3 cut(s) 584, 867, 1130
ZrmI AGTACT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.