Rh5DG461000

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000188
Physical Location & Seq
Forward (+)
73244355 .. 73244912
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG461000.1

Sequence Viewer

Length: 558 bp
ATGCTTAATGACAACATTTTCAACCATAACCGCAATTTCTCCCGTCAAATTTTGCACATAATTGATATGCTAAGAATGTTCATGGTTGTCCCATTTAAAGACTCTTTAGACAAATATGAGCACCAGGAGGAAGATTACTATGAGTCCAAGGACAAGATAGAGTTGCTGCAAGGGATTCCTAGTGCAACTGATCTTTCAAAGGTAGGTATCAAATTCACATGCGAGTGGGATTGCATAATGAACATACAATTCAAAAATGGAGTATTTAATATCCCGCCATTGGTGATTGAGGAGAGGATGAGACCTTTATTCAGGAATGTGATTGCCTTTGAGCAGTGCTACTATAATTGTCAGCACAAGATAACGTCATATGCGGTTTTAATGGACAACCTTATTGAAACCAGTGAGGATGTCGAATTCCTTTGCAAAGAAGGAATACTAGCAACCAGTTTGAGTCATGAAGATGCATCCCAATTCTTTAAACAGCTTTACACAGACACCACCCTCATTGAGTTCTACTACAAGGGATTCTGCAACGATGTCAATGAGTATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

185

Amino Acids

21.96

Weight (kDa)

4.77

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 11 - 185 1.8e-41 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 31, 275, 374
AcsI RAATTY 3 cut(s) 48, 212, 416
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 4 cut(s) 22, 198, 253, 398
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 1 cut(s) 487
AluI AGCT 1 cut(s) 487
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 166
ApoI RAATTY 3 cut(s) 48, 212, 416
AsuHPI GGTGA 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 295
BfaI CTAG 2 cut(s) 180, 440
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 2 cut(s) 454, 476
BsaI GGTCTC 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 2 cut(s) 402, 447
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 3 cut(s) 303, 415, 467
BseLI CCNNNNNNNGG 1 cut(s) 280
BseNI ACTGG 2 cut(s) 402, 447
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 123
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 74
Bso31I GGTCTC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 3 cut(s) 31, 275, 374
BspHI TCATGA 1 cut(s) 457
BspTNI GGTCTC 1 cut(s) 295
BsrI ACTGG 2 cut(s) 402, 447
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 3 cut(s) 303, 415, 467
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 1 cut(s) 190
BstNI CCWGG 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 153
BtsCI GGATG 3 cut(s) 303, 415, 467
BtsI GCAGTG 1 cut(s) 341
BtsIMutI CAGTG 2 cut(s) 341, 409
CciI TCATGA 1 cut(s) 457
CspCI CAANNNNNGTGG 2 cut(s) 490, 525
CviAII CATG 3 cut(s) 82, 219, 458
CviJI RGCY 1 cut(s) 487
CviKI_1 RGCY 1 cut(s) 487
DdeI CTNAG 1 cut(s) 71
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
DraI TTTAAA 2 cut(s) 97, 481
Eco130I CCWWGG 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 469
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 3 cut(s) 85, 222, 461
FaqI GGGAC 1 cut(s) 74
FatI CATG 3 cut(s) 81, 218, 457
FauI CCCGC 1 cut(s) 282
FauNDI CATATG 1 cut(s) 370
Fnu4HI GCNGC 1 cut(s) 167
FokI GGATG 3 cut(s) 310, 422, 454
Fsp4HI GCNGC 1 cut(s) 167
FspBI CTAG 2 cut(s) 180, 440
GluI GCNGC 1 cut(s) 167
Hin1II CATG 3 cut(s) 85, 222, 461
HinfI GANTC 5 cut(s) 101, 143, 175, 454, 528
HphI GGTGA 1 cut(s) 295
Hpy188III TCNNGA 2 cut(s) 313, 458
HpyAV CCTTC 1 cut(s) 425
HpyCH4IV ACGT 1 cut(s) 365
HpyCH4V TGCA 7 cut(s) 55, 169, 185, 234, 426, 467, 534
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 365
Hsp92II CATG 3 cut(s) 85, 222, 461
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 5 cut(s) 110, 137, 298, 415, 460
Lsp1109I GCAGC 1 cut(s) 153
LweI GCATC 2 cut(s) 454, 476
MaeI CTAG 2 cut(s) 180, 440
MaeII ACGT 1 cut(s) 365
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 2 cut(s) 143, 473
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 8 cut(s) 34, 48, 60, 212, 248, 346, 416, 473
MlyI GAGTC 3 cut(s) 95, 152, 463
MnlI CCTC 5 cut(s) 121, 283, 288, 400, 515
Mph1103I ATGCAT 1 cut(s) 469
MseI TTAA 5 cut(s) 6, 96, 267, 380, 480
MslI CAYNNNNRTG 2 cut(s) 223, 462
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
NdeI CATATG 1 cut(s) 370
NdeII GATC 1 cut(s) 190
NlaIII CATG 3 cut(s) 85, 222, 461
NsiI ATGCAT 1 cut(s) 469
NspI RCATGY 1 cut(s) 222
PagI TCATGA 1 cut(s) 457
PfeI GAWTC 2 cut(s) 175, 528
PkrI GCNGC 1 cut(s) 168
PleI GAGTC 3 cut(s) 95, 151, 462
PpsI GAGTC 3 cut(s) 95, 151, 462
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
RseI CAYNNNNRTG 2 cut(s) 223, 462
SaqAI TTAA 5 cut(s) 6, 96, 267, 380, 480
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 3 cut(s) 95, 152, 463
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 123
SetI ASST 6 cut(s) 204, 208, 307, 368, 393, 489
SfaNI GCATC 2 cut(s) 454, 476
SmiMI CAYNNNNRTG 2 cut(s) 223, 462
Sse9I AATT 8 cut(s) 34, 48, 60, 212, 248, 346, 416, 473
SsiI CCGC 3 cut(s) 31, 275, 374
SspMI CTAG 2 cut(s) 180, 440
StyD4I CCNGG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 147
TaiI ACGT 1 cut(s) 368
TaqI TCGA 1 cut(s) 414
TasI AATT 8 cut(s) 34, 48, 60, 212, 248, 346, 416, 473
TfiI GAWTC 2 cut(s) 175, 528
Tru1I TTAA 5 cut(s) 6, 96, 267, 380, 480
Tru9I TTAA 5 cut(s) 6, 96, 267, 380, 480
TscAI CASTG 2 cut(s) 341, 409
TseI GCWGC 1 cut(s) 166
TspDTI ATGAA 3 cut(s) 70, 254, 474
TspRI CASTG 2 cut(s) 341, 409
XapI RAATTY 3 cut(s) 48, 212, 416
XceI RCATGY 1 cut(s) 222
XspI CTAG 2 cut(s) 180, 440
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.