RchiOBHm_Chr3g0483161

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000188
Physical Location & Seq
Forward (+)
29333005 .. 29333307
303 bp
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UTR
Exon/CDS
Intron
PRQ44793

Sequence Viewer

Length: 303 bp
ATGGAAAATGTCAAACAATGGTACTTACGTAACCTTCTCTCTCGCTTGAATATAAGCTTGAGAACTCTGATCCGAAGCGTTTGCAATGTTTTCGAGTTTGAGAAACGTGCACGTGCATTTTATGCAGAACCACTTGATCATCTTAGCCCAAATGATTTTATAGAAATGATGATACTTGATGGTTGCTTTCTACTAGAACTATTTAAGAAGTTCTTCTGTGAGGGATATAAGCGTTGTCATAAGAAAAATTTTGTTCCAGCTGAAGTACTACATATTGAGAATGATCCTATAACTACATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

12.02

Weight (kDa)

7.68

Isoelectric Point (pI)

65.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 75 2e-15 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 64, 278
AcsI RAATTY 1 cut(s) 247
AcuI CTGAAG 1 cut(s) 282
AcvI CACGTG 1 cut(s) 113
AfaI GTAC 2 cut(s) 23, 267
AgsI TTSAA 1 cut(s) 49
AluBI AGCT 2 cut(s) 57, 260
AluI AGCT 2 cut(s) 57, 260
Alw21I GWGCWC 1 cut(s) 112
Alw44I GTGCAC 1 cut(s) 108
AlwI GGATC 2 cut(s) 64, 278
ApaLI GTGCAC 1 cut(s) 108
ApoI RAATTY 1 cut(s) 247
Asp700I GAANNNNTTC 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 112
BaeI ACNNNNGTAYC 2 cut(s) 13, 46
BbrPI CACGTG 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 112
BccI CCATC 1 cut(s) 173
BcgI CGANNNNNNTGC 4 cut(s) 63, 73, 97, 107
BclI TGATCA 1 cut(s) 136
BfaI CTAG 1 cut(s) 194
BmcAI AGTACT 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 79
BsaAI YACGTR 2 cut(s) 29, 113
Bse3DI GCAATG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 3 cut(s) 69, 136, 283
BspPI GGATC 2 cut(s) 64, 278
BsrDI GCAATG 1 cut(s) 91
BssMI GATC 3 cut(s) 69, 136, 283
BstAPI GCANNNNNTGC 1 cut(s) 122
BstBAI YACGTR 2 cut(s) 29, 113
BstDEI CTNAG 1 cut(s) 143
BstKTI GATC 3 cut(s) 72, 139, 286
BstMBI GATC 3 cut(s) 69, 136, 283
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 112
BstSNI TACGTA 1 cut(s) 29
Csp6I GTAC 2 cut(s) 22, 266
CviJI RGCY 3 cut(s) 57, 147, 260
CviKI_1 RGCY 3 cut(s) 57, 147, 260
CviQI GTAC 2 cut(s) 22, 266
DdeI CTNAG 1 cut(s) 143
DpnI GATC 3 cut(s) 71, 138, 285
DpnII GATC 3 cut(s) 69, 136, 283
Eco105I TACGTA 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 282
Eco72I CACGTG 1 cut(s) 113
FaiI YATR 8 cut(s) 53, 123, 161, 228, 240, 273, 290, 298
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FbaI TGATCA 1 cut(s) 136
FspBI CTAG 1 cut(s) 194
HindIII AAGCTT 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 69, 74
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 44
HpyCH4IV ACGT 3 cut(s) 28, 106, 112
HpyCH4V TGCA 4 cut(s) 84, 110, 116, 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 3 cut(s) 28, 106, 112
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 3 cut(s) 69, 136, 283
LpnPI CCDG 1 cut(s) 270
MaeI CTAG 1 cut(s) 194
MaeII ACGT 3 cut(s) 28, 106, 112
MaeIII GTNAC 1 cut(s) 29
MalI GATC 3 cut(s) 71, 138, 285
MboI GATC 3 cut(s) 69, 136, 283
MboII GAAGA 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 1 cut(s) 247
MnlI CCTC 1 cut(s) 214
MroXI GAANNNNTTC 1 cut(s) 212
MseI TTAA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 3 cut(s) 69, 136, 283
PdmI GAANNNNTTC 1 cut(s) 212
PmaCI CACGTG 1 cut(s) 113
PmlI CACGTG 1 cut(s) 113
Ppu21I YACGTR 2 cut(s) 29, 113
PspCI CACGTG 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 2 cut(s) 23, 267
RsaNI GTAC 2 cut(s) 22, 266
SaqAI TTAA 1 cut(s) 204
Sau3AI GATC 3 cut(s) 69, 136, 283
ScaI AGTACT 1 cut(s) 267
SduI GDGCHC 1 cut(s) 112
SetI ASST 6 cut(s) 31, 36, 59, 109, 115, 262
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
SnaBI TACGTA 1 cut(s) 29
Sse9I AATT 1 cut(s) 247
SspMI CTAG 1 cut(s) 194
TaiI ACGT 3 cut(s) 31, 109, 115
TaqI TCGA 1 cut(s) 93
TasI AATT 1 cut(s) 247
TatI WGTACW 1 cut(s) 265
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
VneI GTGCAC 1 cut(s) 108
XapI RAATTY 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 212
XspI CTAG 1 cut(s) 194
ZrmI AGTACT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.