Rroxscaffold_1G00010770

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000188
Physical Location & Seq
Forward (+)
13744277 .. 13745562
1286 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00010770.1

Sequence Viewer

Length: 444 bp
ATGCATGGACTATCTAAGGCCACGGGGTTGCGGCGAGGGAGAGGAAGCTATCGCCGGTGGTCCACCACGGAGAGGTGGCCGAGTACCGATTTCCGATCGGACCCGGTCTCGGGCAACTTAGATCATAGTGAAAAGTTGGAAACATATAGTCATGGCAGATATGGTATTATTGCTCTGACTCTTGTAGAAGACGAAGGTACTAGTGTCATTGAATTGGAAGTGACCAAGTCCATTGCAGCAAAACTTCACCCCAAATCACCATTGCCTAATTCGTGTTGCATATTCAAAGTTCCCGAGGTGAAGCAAAGGCGAAACAGAGAAGAATATCGACTTGATGTTGTCTCAATCGAACCCTTGCACAGAGGCTGCAACGAACAATATCAGTTCATGGAAAATGTGAAACTATGGTATTTGCATTGTAACCTCCAAGAACGAGTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

147

Amino Acids

17.06

Weight (kDa)

8.71

Isoelectric Point (pI)

56.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 94 - 144 8.1e-07 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 31
AcoI YGGCCR 1 cut(s) 77
AfaI GTAC 2 cut(s) 85, 199
AfiI CCNNNNNNNGG 3 cut(s) 72, 109, 110
AgsI TTSAA 2 cut(s) 212, 286
AhlI ACTAGT 1 cut(s) 200
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
Alw26I GTCTC 2 cut(s) 112, 346
AlwNI CAGNNNCTG 1 cut(s) 366
Ama87I CYCGRG 2 cut(s) 109, 293
AoxI GGCC 2 cut(s) 18, 77
ApeKI GCWGC 2 cut(s) 236, 366
AspS9I GGNCC 2 cut(s) 60, 100
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 3 cut(s) 239, 249, 310
AvaI CYCGRG 2 cut(s) 109, 293
AvaII GGWCC 2 cut(s) 60, 100
BaeI ACNNNNGTAYC 2 cut(s) 189, 222
BbsI GAAGAC 1 cut(s) 195
BbvI GCAGC 2 cut(s) 248, 353
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 2 cut(s) 112, 346
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 1 cut(s) 201
BisI GCNGC 3 cut(s) 32, 237, 367
BlsI GCNGC 3 cut(s) 33, 238, 368
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 2 cut(s) 60, 100
BmeT110I CYCGRG 2 cut(s) 109, 293
BmgT120I GGNCC 2 cut(s) 60, 100
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 112
BsaJI CCNNGG 3 cut(s) 21, 66, 294
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 109, 110
Bse118I RCCGGY 1 cut(s) 54
Bse3DI GCAATG 2 cut(s) 231, 260
BseDI CCNNGG 3 cut(s) 21, 66, 294
BseLI CCNNNNNNNGG 3 cut(s) 72, 109, 110
BseMI GCAATG 2 cut(s) 231, 260
BseXI GCAGC 2 cut(s) 248, 353
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 2 cut(s) 20, 79
BsiEI CGRYCG 1 cut(s) 98
BsiHKCI CYCGRG 2 cut(s) 109, 293
BsiSI CCGG 2 cut(s) 55, 104
BslI CCNNNNNNNGG 3 cut(s) 72, 109, 110
BsmAI GTCTC 2 cut(s) 112, 346
BsnI GGCC 2 cut(s) 20, 79
Bso31I GGTCTC 1 cut(s) 112
BsoBI CYCGRG 2 cut(s) 109, 293
Bsp143I GATC 2 cut(s) 95, 121
BspACI CCGC 1 cut(s) 31
BspANI GGCC 2 cut(s) 20, 79
BspLI GGNNCC 1 cut(s) 102
BspTNI GGTCTC 1 cut(s) 112
BsrDI GCAATG 2 cut(s) 231, 260
BsrFI RCCGGY 1 cut(s) 54
BssAI RCCGGY 1 cut(s) 54
BssECI CCNNGG 3 cut(s) 21, 66, 294
BssMI GATC 2 cut(s) 95, 121
BstDEI CTNAG 2 cut(s) 15, 118
BstDSI CCRYGG 2 cut(s) 21, 66
BstKTI GATC 2 cut(s) 98, 124
BstMAI GTCTC 2 cut(s) 112, 346
BstMBI GATC 2 cut(s) 95, 121
BstMCI CGRYCG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 248, 353
BstV2I GAAGAC 1 cut(s) 195
BsuRI GGCC 2 cut(s) 20, 79
BtgI CCRYGG 2 cut(s) 21, 66
CaiI CAGNNNCTG 1 cut(s) 366
Cfr10I RCCGGY 1 cut(s) 54
Cfr13I GGNCC 2 cut(s) 60, 100
Csp6I GTAC 2 cut(s) 84, 198
CviAII CATG 3 cut(s) 5, 152, 388
CviJI RGCY 4 cut(s) 20, 48, 79, 366
CviKI_1 RGCY 4 cut(s) 20, 48, 79, 366
CviQI GTAC 2 cut(s) 84, 198
DdeI CTNAG 2 cut(s) 15, 118
DpnI GATC 2 cut(s) 97, 123
DpnII GATC 2 cut(s) 95, 121
EaeI YGGCCR 1 cut(s) 77
Eco31I GGTCTC 1 cut(s) 112
Eco47I GGWCC 2 cut(s) 60, 100
Eco88I CYCGRG 2 cut(s) 109, 293
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 155, 391
FatI CATG 3 cut(s) 4, 151, 387
Fnu4HI GCNGC 3 cut(s) 32, 237, 367
Fsp4HI GCNGC 3 cut(s) 32, 237, 367
FspBI CTAG 1 cut(s) 201
GluI GCNGC 3 cut(s) 32, 237, 367
HaeIII GGCC 2 cut(s) 20, 79
HapII CCGG 2 cut(s) 55, 104
Hin1II CATG 3 cut(s) 8, 155, 391
HinfI GANTC 1 cut(s) 178
HpaII CCGG 2 cut(s) 55, 104
HphI GGTGA 3 cut(s) 239, 249, 310
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 3 cut(s) 95, 100, 177
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 188
HpyCH4V TGCA 6 cut(s) 4, 236, 279, 358, 369, 415
HpyF3I CTNAG 2 cut(s) 15, 118
Hsp92II CATG 3 cut(s) 8, 155, 391
Kzo9I GATC 2 cut(s) 95, 121
LpnPI CCDG 2 cut(s) 68, 117
Lsp1109I GCAGC 2 cut(s) 248, 353
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 220, 419
MalI GATC 2 cut(s) 97, 123
MboI GATC 2 cut(s) 95, 121
MboII GAAGA 2 cut(s) 200, 332
MluCI AATT 2 cut(s) 212, 268
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 6 cut(s) 29, 35, 66, 289, 356, 434
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 2 cut(s) 55, 104
MspR9I CCNGG 1 cut(s) 104
NciI CCSGG 1 cut(s) 104
NdeII GATC 2 cut(s) 95, 121
NlaIII CATG 3 cut(s) 8, 155, 391
NlaIV GGNNCC 1 cut(s) 102
NmeAIII GCCGAG 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 220
NsiI ATGCAT 1 cut(s) 6
PflFI GACNNNGTC 2 cut(s) 104, 226
PkrI GCNGC 3 cut(s) 33, 238, 368
Ple19I CGATCG 1 cut(s) 98
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 2 cut(s) 60, 100
PstNI CAGNNNCTG 1 cut(s) 366
PsyI GACNNNGTC 2 cut(s) 104, 226
PvuI CGATCG 1 cut(s) 98
RsaI GTAC 2 cut(s) 85, 199
RsaNI GTAC 2 cut(s) 84, 198
SatI GCNGC 3 cut(s) 32, 237, 367
Sau3AI GATC 2 cut(s) 95, 121
Sau96I GGNCC 2 cut(s) 60, 100
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 104
SetI ASST 5 cut(s) 50, 77, 199, 300, 426
SgrAI CRCCGGYG 1 cut(s) 54
SinI GGWCC 2 cut(s) 60, 100
SpeI ACTAGT 1 cut(s) 200
Sse9I AATT 2 cut(s) 212, 268
SsiI CCGC 1 cut(s) 31
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 102
TaqI TCGA 2 cut(s) 328, 348
TasI AATT 2 cut(s) 212, 268
TauI GCSGC 1 cut(s) 34
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 2 cut(s) 236, 366
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 376
TspGWI ACGGA 1 cut(s) 83
Tth111I GACNNNGTC 2 cut(s) 104, 226
VpaK11BI GGWCC 2 cut(s) 60, 100
XspI CTAG 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.