pycom08g19660

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000188
Physical Location & Seq
Reverse (-)
19662602 .. 19663288
687 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g19660.1

Sequence Viewer

Length: 687 bp
ATGGACGTAGACATTTTACTTGAAGTGTCGAAGAACACCTCGACGCCAAAGCTTCCCAGGTGCATCTTCAGAGTTCCTGAAGTTCTCCGCAGACATAACGTACTGGCATACGCACCTGACATTGTCTCAATCGGACCCTATCATCCACGAGGCAATCTACAATTTCAAGCTATGGAAAATCTGAAATACGAGTATTTGCGTGACCTCCTCTTACACATGGATAGGTCACACGACAGGGATATGAAGTTAGAAGCATCGATCAATAAACTCATCGATTACATTTTAGTTCACACGAAAGTACAAGCCATGGCTGAGTTTGAGAGAAAAGCTCGTGATTTTTATGCTCATCCGTTTGATCCTCTGATGAAAATGGAGTTTCTCCACATGATGATACTTGATGGTTGCTTCCTAGTACAAATATTTAGGAAGTTTGTGAATAAGGAACAGAGGGACATTAATGACCCATTATTCAACATGGATTGCATGTTCCAGTACATATGCCATGACCTTTTGCTCTTAGAAAATCAGATTCCTTGGCTTGTCCTCAAGTACATATATGAGCTCACCGTGAAGTATTACCAGAACCCTGAGCCCTGCCTCTCGGTACTTATCCTCACCGCGCTCAGCTCACAACCACAAATGTCCCATAACTGCCGGTGGTATTTGGATCGATCTAAGAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

229

Amino Acids

27.26

Weight (kDa)

7.65

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 22 - 208 8.6e-44 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 9
AccII CGCG 1 cut(s) 620
AciI CCGC 2 cut(s) 88, 618
AclWI GGATC 2 cut(s) 350, 675
AcuI CTGAAG 2 cut(s) 52, 99
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 6 cut(s) 102, 300, 414, 494, 551, 606
AgsI TTSAA 3 cut(s) 23, 167, 472
AjnI CCWGG 1 cut(s) 56
AloI GAACNNNNNNTCC 2 cut(s) 470, 502
AluBI AGCT 5 cut(s) 52, 170, 329, 562, 627
AluI AGCT 5 cut(s) 52, 170, 329, 562, 627
Alw21I GWGCWC 1 cut(s) 564
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 2 cut(s) 350, 675
AseI ATTAAT 1 cut(s) 456
AspLEI GCGC 1 cut(s) 622
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 556, 607
AvaII GGWCC 1 cut(s) 134
BanII GRGCYC 2 cut(s) 564, 594
BauI CACGAG 2 cut(s) 147, 330
Bbv12I GWGCWC 1 cut(s) 564
BccI CCATC 1 cut(s) 392
BciT130I CCWGG 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 1 cut(s) 410
BlpI GCTNAGC 1 cut(s) 623
Bme1390I CCNGG 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 2 cut(s) 72, 263
BplI GAGNNNNNCTC 2 cut(s) 313, 345
Bpu10I CCTNAGC 1 cut(s) 588
Bpu1102I GCTNAGC 1 cut(s) 623
BpuEI CTTGAG 1 cut(s) 530
Bsa29I ATCGAT 3 cut(s) 257, 273, 670
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 56, 306, 533
Bse118I RCCGGY 1 cut(s) 654
Bse1I ACTGG 2 cut(s) 108, 490
BseBI CCWGG 1 cut(s) 58
BseCI ATCGAT 3 cut(s) 257, 273, 670
BseDI CCNNGG 3 cut(s) 56, 306, 533
BseGI GGATG 2 cut(s) 142, 346
BseMII CTCAG 3 cut(s) 303, 579, 637
BseNI ACTGG 2 cut(s) 108, 490
BseRI GAGGAG 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 620
BshVI ATCGAT 3 cut(s) 257, 273, 670
BsiHKAI GWGCWC 1 cut(s) 564
BsiSI CCGG 1 cut(s) 655
BslFI GGGAC 2 cut(s) 464, 628
BsmAI GTCTC 1 cut(s) 130
BsmFI GGGAC 2 cut(s) 464, 628
Bsp1286I GDGCHC 2 cut(s) 564, 594
Bsp143I GATC 4 cut(s) 258, 355, 667, 671
Bsp1720I GCTNAGC 1 cut(s) 623
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 2 cut(s) 88, 618
BspCNI CTCAG 3 cut(s) 304, 580, 636
BspDI ATCGAT 3 cut(s) 257, 273, 670
BspFNI CGCG 1 cut(s) 620
BspLI GGNNCC 1 cut(s) 136
BspPI GGATC 2 cut(s) 350, 675
BsrFI RCCGGY 1 cut(s) 654
BsrI ACTGG 2 cut(s) 108, 490
BssAI RCCGGY 1 cut(s) 654
BssECI CCNNGG 3 cut(s) 56, 306, 533
BssMI GATC 4 cut(s) 258, 355, 667, 671
BssNI GRCGYC 1 cut(s) 44
BssSI CACGAG 2 cut(s) 147, 330
BssT1I CCWWGG 2 cut(s) 306, 533
Bst2BI CACGAG 2 cut(s) 147, 330
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 568
BstACI GRCGYC 1 cut(s) 44
BstDEI CTNAG 5 cut(s) 312, 517, 588, 623, 675
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 142, 346
BstFNI CGCG 1 cut(s) 620
BstHHI GCGC 1 cut(s) 622
BstKTI GATC 4 cut(s) 261, 358, 670, 674
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 4 cut(s) 258, 355, 667, 671
BstNI CCWGG 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 487
BstSCI CCNGG 1 cut(s) 56
BstUI CGCG 1 cut(s) 620
Bsu15I ATCGAT 3 cut(s) 257, 273, 670
BsuTUI ATCGAT 3 cut(s) 257, 273, 670
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 2 cut(s) 142, 346
CfoI GCGC 1 cut(s) 622
Cfr10I RCCGGY 1 cut(s) 654
Cfr13I GGNCC 1 cut(s) 134
ClaI ATCGAT 3 cut(s) 257, 273, 670
CseI GACGC 1 cut(s) 52
Csp6I GTAC 6 cut(s) 101, 299, 413, 493, 550, 605
CviAII CATG 6 cut(s) 217, 307, 385, 475, 484, 503
CviJI RGCY 9 cut(s) 52, 170, 305, 311, 329, 538, 562, 592, 627
CviKI_1 RGCY 9 cut(s) 52, 170, 305, 311, 329, 538, 562, 592, 627
CviQI GTAC 6 cut(s) 101, 299, 413, 493, 550, 605
DdeI CTNAG 5 cut(s) 312, 517, 588, 623, 675
DpnI GATC 4 cut(s) 260, 357, 669, 673
DpnII GATC 4 cut(s) 258, 355, 667, 671
Ecl136II GAGCTC 1 cut(s) 562
Eco130I CCWWGG 2 cut(s) 306, 533
Eco24I GRGCYC 2 cut(s) 564, 594
Eco47I GGWCC 1 cut(s) 134
Eco53kI GAGCTC 1 cut(s) 562
Eco57I CTGAAG 2 cut(s) 52, 99
EcoICRI GAGCTC 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 56
EcoT14I CCWWGG 2 cut(s) 306, 533
EcoT38I GRGCYC 2 cut(s) 564, 594
ErhI CCWWGG 2 cut(s) 306, 533
FaeI CATG 6 cut(s) 220, 310, 388, 478, 487, 506
FaqI GGGAC 2 cut(s) 464, 628
FatI CATG 6 cut(s) 216, 306, 384, 474, 483, 502
FauNDI CATATG 1 cut(s) 497
FblI GTMKAC 1 cut(s) 9
FokI GGATG 2 cut(s) 129, 333
FriOI GRGCYC 2 cut(s) 564, 594
FspBI CTAG 1 cut(s) 410
GlaI GCGC 1 cut(s) 621
HapII CCGG 1 cut(s) 655
HgaI GACGC 1 cut(s) 52
HhaI GCGC 1 cut(s) 622
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 6 cut(s) 220, 310, 388, 478, 487, 506
Hin6I GCGC 1 cut(s) 620
HinP1I GCGC 1 cut(s) 620
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 1 cut(s) 529
HpaII CCGG 1 cut(s) 655
HphI GGTGA 2 cut(s) 556, 607
Hpy166II GTNNAC 2 cut(s) 10, 289
Hpy188I TCNGA 5 cut(s) 71, 134, 183, 363, 528
Hpy188III TCNNGA 2 cut(s) 77, 332
Hpy8I GTNNAC 2 cut(s) 10, 289
Hpy99I CGWCG 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 568
HpyCH4IV ACGT 2 cut(s) 6, 99
HpyCH4V TGCA 2 cut(s) 63, 483
HpyF3I CTNAG 5 cut(s) 312, 517, 588, 623, 675
HpySE526I ACGT 2 cut(s) 6, 99
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 6 cut(s) 220, 310, 388, 478, 487, 506
HspAI GCGC 1 cut(s) 620
Kzo9I GATC 4 cut(s) 258, 355, 667, 671
LweI GCATC 2 cut(s) 72, 263
MaeI CTAG 1 cut(s) 410
MaeII ACGT 2 cut(s) 6, 99
MaeIII GTNAC 2 cut(s) 200, 225
MalI GATC 4 cut(s) 260, 357, 669, 673
MboI GATC 4 cut(s) 258, 355, 667, 671
MboII GAAGA 2 cut(s) 43, 58
MhlI GDGCHC 2 cut(s) 564, 594
MluCI AATT 1 cut(s) 161
MnlI CCTC 9 cut(s) 49, 143, 215, 218, 369, 441, 554, 608, 623
MseI TTAA 1 cut(s) 456
MspI CCGG 1 cut(s) 655
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
MvnI CGCG 1 cut(s) 620
NcoI CCATGG 1 cut(s) 306
NdeI CATATG 1 cut(s) 497
NdeII GATC 4 cut(s) 258, 355, 667, 671
NlaIII CATG 6 cut(s) 220, 310, 388, 478, 487, 506
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 2 cut(s) 200, 225
NspI RCATGY 1 cut(s) 487
PfeI GAWTC 1 cut(s) 529
PflFI GACNNNGTC 1 cut(s) 122
PshBI ATTAAT 1 cut(s) 456
Psp124BI GAGCTC 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 134
PsyI GACNNNGTC 1 cut(s) 122
RsaI GTAC 6 cut(s) 102, 300, 414, 494, 551, 606
RsaNI GTAC 6 cut(s) 101, 299, 413, 493, 550, 605
SacI GAGCTC 1 cut(s) 564
SaqAI TTAA 1 cut(s) 456
Sau3AI GATC 4 cut(s) 258, 355, 667, 671
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 2 cut(s) 564, 594
SfaNI GCATC 2 cut(s) 72, 263
SinI GGWCC 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 1 cut(s) 161
SsiI CCGC 2 cut(s) 88, 618
SspI AATATT 1 cut(s) 420
SspMI CTAG 1 cut(s) 410
SstI GAGCTC 1 cut(s) 564
StyD4I CCNGG 1 cut(s) 56
StyI CCWWGG 2 cut(s) 306, 533
TaaI ACNGT 1 cut(s) 568
TaiI ACGT 2 cut(s) 9, 102
TaqI TCGA 5 cut(s) 29, 41, 257, 273, 670
TasI AATT 1 cut(s) 161
TatI WGTACW 4 cut(s) 298, 412, 492, 549
TfiI GAWTC 1 cut(s) 529
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TseFI GTSAC 2 cut(s) 200, 225
Tsp45I GTSAC 2 cut(s) 200, 225
TspDTI ATGAA 2 cut(s) 257, 380
TspGWI ACGGA 1 cut(s) 339
Tth111I GACNNNGTC 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 134
VspI ATTAAT 1 cut(s) 456
XceI RCATGY 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 9
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.