RLG00000021370

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000188
Physical Location & Seq
Reverse (-)
74630392 .. 74635721
5330 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021370

Sequence Viewer

Length: 1062 bp
ATGACTGTTGGACGGTCGATAACCACCTTCAATACAGAGGTTTCGAACGCCAAATCACCTTTGCCTGCTACATGTTGCATCTTCAAACTTCCCGAGGTGCCACAAAGACAAAAAGTGGAGGCCTACAAACCTGACATAGTCTCAATTGGGCCATTTCACCGAGATGATGACGACCCCATTTTCAACGTGCCTTGGATGCTCGATTATCTATACCATGATCTTCTGTTACTCGAAAATCAGCTACCTTGGTTTGTGCTCGAGTTTTTCTATAACCTAATTGAGAGTGGTAAGCATTACCCCCTCAGTAAATTGGTAATCGACTTCTTCAAAAGTTCAGTAGCTGATCCTAACATGTTTGGCTACCTCAATCCCGTGTCTGGTATTAAAATTCTTCATATACTTGATCTGATTAGAGGTTCCCTCATTGAAGGAGTAGAAGACCAAAGCGAGGACTTCAAGAAATTCCGCTACCCATATAAGACCCACCCCCTCTTGGCGCAGAGGATACCTAGTGCTACTGCTCTTTCAGAGGCTGGCGTTAAGTTTGAAAAGGTAAAGGGCCTTCCAGGTTGCATATTGAACATAACGTTCAAAAATGGCGTTTTCACCATTCCTCATCTGACTATCGATGAGAGGACAAGTCCTTTGTTCAGGAACCTTATGGCCTTCGAGCAGTGCTATAGCGGGTGCTTGAACAAGATAACATCCTACACGTTATTGATGGATAACCTCATCGATACGAGCAAGGATGTGGATCTTCTATGTGAGAAAGGTATAGTAGCCACCTTGTTGACTGCTGATGATGCTTTGAAGTTCTTCAACGAGCTATACCATGACGACACCACACTCTATCAGTTCTACTACTTGAAACTCTGTACAGAGTGCATTAACCTCGAAAGCCCTGAGAAAGTGAGAATGAAGAGGAAAGTCAACAAAGTTAGGATAATGATGGAGGGCAAAACGGTAAATCCCACAAGTGTATTAACTGGTACTAACCTTGAAGACCGTGAAATGAAAAGGAGAGTTAAGAAAGTCAGGATGATGATGAGGGCAAAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

354

Amino Acids

40.65

Weight (kDa)

8.28

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 56 - 301 5e-59 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 97
AciI CCGC 2 cut(s) 466, 684
AclI AACGTT 1 cut(s) 587
AclWI GGATC 2 cut(s) 338, 762
AcsI RAATTY 2 cut(s) 387, 461
AfaI GTAC 2 cut(s) 877, 991
AfiI CCNNNNNNNGG 3 cut(s) 377, 448, 493
AflIII ACRYGT 3 cut(s) 71, 351, 711
AjnI CCWGG 1 cut(s) 565
AluBI AGCT 3 cut(s) 241, 341, 826
AluI AGCT 3 cut(s) 241, 341, 826
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 2 cut(s) 338, 762
AlwNI CAGNNNCTG 2 cut(s) 341, 533
Ama87I CYCGRG 2 cut(s) 92, 257
AoxI GGCC 4 cut(s) 120, 149, 559, 663
ApoI RAATTY 2 cut(s) 387, 461
ArsI GACNNNNNNTTYG 2 cut(s) 628, 660
Asp700I GAANNNNTTC 1 cut(s) 815
AspLEI GCGC 1 cut(s) 499
AspS9I GGNCC 2 cut(s) 149, 559
AsuHPI GGTGA 3 cut(s) 48, 149, 598
AsuII TTCGAA 1 cut(s) 44
AvaI CYCGRG 2 cut(s) 92, 257
BanI GGYRCC 1 cut(s) 97
BarI GAAGNNNNNNTAC 2 cut(s) 546, 578
BbsI GAAGAC 2 cut(s) 444, 1008
Bbv12I GWGCWC 1 cut(s) 258
BccI CCATC 2 cut(s) 715, 943
BcgI CGANNNNNNTGC 2 cut(s) 874, 908
BciT130I CCWGG 1 cut(s) 567
BciVI GTATCC 1 cut(s) 498
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 1 cut(s) 510
BfmI CTRYAG 1 cut(s) 679
BfuI GTATCC 1 cut(s) 498
Bme1390I CCNGG 1 cut(s) 567
BmeT110I CYCGRG 2 cut(s) 92, 257
BmgT120I GGNCC 2 cut(s) 149, 559
BmiI GGNNCC 3 cut(s) 99, 418, 656
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 3 cut(s) 87, 186, 793
BpiI GAAGAC 2 cut(s) 444, 1008
BplI GAGNNNNNCTC 2 cut(s) 405, 437
Bpu14I TTCGAA 1 cut(s) 44
Bsa29I ATCGAT 2 cut(s) 627, 735
BsaBI GATNNNNATC 1 cut(s) 753
BsaJI CCNNGG 3 cut(s) 93, 191, 245
Bsc4I CCNNNNNNNGG 3 cut(s) 377, 448, 493
Bse1I ACTGG 1 cut(s) 991
Bse8I GATNNNNATC 1 cut(s) 753
BseBI CCWGG 1 cut(s) 567
BseCI ATCGAT 2 cut(s) 627, 735
BseDI CCNNGG 3 cut(s) 93, 191, 245
BseGI GGATG 4 cut(s) 201, 704, 754, 1044
BseJI GATNNNNATC 1 cut(s) 753
BseLI CCNNNNNNNGG 3 cut(s) 377, 448, 493
BseMII CTCAG 2 cut(s) 316, 894
BseNI ACTGG 1 cut(s) 991
Bsh1285I CGRYCG 1 cut(s) 17
BshFI GGCC 4 cut(s) 122, 151, 561, 665
BshNI GGYRCC 1 cut(s) 97
BshVI ATCGAT 2 cut(s) 627, 735
BsiEI CGRYCG 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 258
BsiHKCI CYCGRG 2 cut(s) 92, 257
BslI CCNNNNNNNGG 3 cut(s) 377, 448, 493
BsmAI GTCTC 1 cut(s) 145
BsnI GGCC 4 cut(s) 122, 151, 561, 665
BsoBI CYCGRG 2 cut(s) 92, 257
Bsp119I TTCGAA 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 258
Bsp1407I TGTACA 1 cut(s) 875
Bsp143I GATC 4 cut(s) 217, 343, 403, 754
BspACI CCGC 2 cut(s) 466, 684
BspANI GGCC 4 cut(s) 122, 151, 561, 665
BspCNI CTCAG 2 cut(s) 315, 895
BspDI ATCGAT 2 cut(s) 627, 735
BspLI GGNNCC 3 cut(s) 99, 418, 656
BspPI GGATC 2 cut(s) 338, 762
BspT104I TTCGAA 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 875
BsrI ACTGG 1 cut(s) 991
BssECI CCNNGG 3 cut(s) 93, 191, 245
BssMI GATC 4 cut(s) 217, 343, 403, 754
BssT1I CCWWGG 2 cut(s) 191, 245
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 4 cut(s) 7, 15, 964, 1007
Bst6I CTCTTC 1 cut(s) 914
BstAUI TGTACA 1 cut(s) 875
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 66, 535
BstDEI CTNAG 2 cut(s) 302, 903
BstF5I GGATG 4 cut(s) 201, 704, 754, 1044
BstHHI GCGC 1 cut(s) 499
BstKTI GATC 4 cut(s) 220, 346, 406, 757
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 4 cut(s) 217, 343, 403, 754
BstMCI CGRYCG 1 cut(s) 17
BstMWI GCNNNNNNNGC 2 cut(s) 196, 803
BstNI CCWGG 1 cut(s) 567
BstNSI RCATGY 2 cut(s) 75, 355
BstSCI CCNGG 1 cut(s) 565
BstSFI CTRYAG 1 cut(s) 679
BstV2I GAAGAC 2 cut(s) 444, 1008
BstX2I RGATCY 1 cut(s) 754
BstYI RGATCY 1 cut(s) 754
Bsu15I ATCGAT 2 cut(s) 627, 735
BsuI GTATCC 1 cut(s) 498
BsuRI GGCC 4 cut(s) 122, 151, 561, 665
BsuTUI ATCGAT 2 cut(s) 627, 735
BtsCI GGATG 4 cut(s) 201, 704, 754, 1044
BtsI GCAGTG 1 cut(s) 680
BtsIMutI CAGTG 1 cut(s) 680
Cac8I GCNNGC 2 cut(s) 66, 535
CaiI CAGNNNCTG 2 cut(s) 341, 533
CfoI GCGC 1 cut(s) 499
Cfr13I GGNCC 2 cut(s) 149, 559
ClaI ATCGAT 2 cut(s) 627, 735
Csp6I GTAC 2 cut(s) 876, 990
CviAII CATG 4 cut(s) 72, 215, 352, 833
CviQI GTAC 2 cut(s) 876, 990
DdeI CTNAG 2 cut(s) 302, 903
DpnI GATC 4 cut(s) 219, 345, 405, 756
DpnII GATC 4 cut(s) 217, 343, 403, 754
Eam1104I CTCTTC 1 cut(s) 914
EarI CTCTTC 1 cut(s) 914
Eco130I CCWWGG 2 cut(s) 191, 245
Eco147I AGGCCT 1 cut(s) 122
Eco88I CYCGRG 2 cut(s) 92, 257
EcoO109I RGGNCCY 1 cut(s) 559
EcoRII CCWGG 1 cut(s) 565
EcoT14I CCWWGG 2 cut(s) 191, 245
ErhI CCWWGG 2 cut(s) 191, 245
FaeI CATG 4 cut(s) 75, 218, 355, 836
FatI CATG 4 cut(s) 71, 214, 351, 832
FauI CCCGC 1 cut(s) 677
FokI GGATG 4 cut(s) 208, 691, 761, 1051
FspBI CTAG 1 cut(s) 510
GlaI GCGC 1 cut(s) 498
HaeIII GGCC 4 cut(s) 122, 151, 561, 665
HhaI GCGC 1 cut(s) 499
Hin1II CATG 4 cut(s) 75, 218, 355, 836
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HincII GTYRAC 2 cut(s) 792, 931
HindII GTYRAC 2 cut(s) 792, 931
HphI GGTGA 3 cut(s) 48, 149, 598
Hpy166II GTNNAC 2 cut(s) 792, 931
Hpy188I TCNGA 3 cut(s) 408, 529, 621
Hpy188III TCNNGA 4 cut(s) 92, 457, 652, 1036
Hpy8I GTNNAC 2 cut(s) 792, 931
HpyAV CCTTC 4 cut(s) 37, 422, 572, 676
HpyCH4III ACNGT 4 cut(s) 7, 15, 964, 1007
HpyCH4IV ACGT 3 cut(s) 186, 587, 713
HpyCH4V TGCA 3 cut(s) 78, 573, 885
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 803
HpyF3I CTNAG 2 cut(s) 302, 903
HpySE526I ACGT 3 cut(s) 186, 587, 713
Hsp92II CATG 4 cut(s) 75, 218, 355, 836
HspAI GCGC 1 cut(s) 497
Kzo9I GATC 4 cut(s) 217, 343, 403, 754
LweI GCATC 3 cut(s) 87, 186, 793
MaeI CTAG 1 cut(s) 510
MaeII ACGT 3 cut(s) 186, 587, 713
MaeIII GTNAC 1 cut(s) 225
MalI GATC 4 cut(s) 219, 345, 405, 756
MboI GATC 4 cut(s) 217, 343, 403, 754
MboII GAAGA 9 cut(s) 73, 212, 316, 383, 449, 749, 808, 931, 1013
MfeI CAATTG 1 cut(s) 144
MflI RGATCY 1 cut(s) 754
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 5 cut(s) 144, 276, 308, 387, 461
MroXI GAANNNNTTC 1 cut(s) 815
MseI TTAA 5 cut(s) 384, 540, 888, 983, 1026
MslI CAYNNNNRTG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 567
MunI CAATTG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 567
MwoI GCNNNNNNNGC 2 cut(s) 196, 803
NdeII GATC 4 cut(s) 217, 343, 403, 754
NlaIII CATG 4 cut(s) 75, 218, 355, 836
NlaIV GGNNCC 3 cut(s) 99, 418, 656
NspI RCATGY 2 cut(s) 75, 355
NspV TTCGAA 1 cut(s) 44
PaeR7I CTCGAG 1 cut(s) 257
PceI AGGCCT 1 cut(s) 122
PciI ACATGT 2 cut(s) 71, 351
PdmI GAANNNNTTC 1 cut(s) 815
PflFI GACNNNGTC 1 cut(s) 137
PscI ACATGT 2 cut(s) 71, 351
Psp1406I AACGTT 1 cut(s) 587
Psp6I CCWGG 1 cut(s) 565
PspGI CCWGG 1 cut(s) 565
PspN4I GGNNCC 3 cut(s) 99, 418, 656
PspPI GGNCC 2 cut(s) 149, 559
PspXI VCTCGAGB 1 cut(s) 257
PstNI CAGNNNCTG 2 cut(s) 341, 533
PsuI RGATCY 1 cut(s) 754
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 2 cut(s) 877, 991
RsaNI GTAC 2 cut(s) 876, 990
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 5 cut(s) 384, 540, 888, 983, 1026
Sau3AI GATC 4 cut(s) 217, 343, 403, 754
Sau96I GGNCC 2 cut(s) 149, 559
ScrFI CCNGG 1 cut(s) 567
SduI GDGCHC 1 cut(s) 258
SfaNI GCATC 3 cut(s) 87, 186, 793
SfcI CTRYAG 1 cut(s) 679
Sfr274I CTCGAG 1 cut(s) 257
SfuI TTCGAA 1 cut(s) 44
SlaI CTCGAG 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 5 cut(s) 144, 276, 308, 387, 461
SseBI AGGCCT 1 cut(s) 122
SsiI CCGC 2 cut(s) 466, 684
SspMI CTAG 1 cut(s) 510
StuI AGGCCT 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 565
StyI CCWWGG 2 cut(s) 191, 245
TaaI ACNGT 4 cut(s) 7, 15, 964, 1007
TaiI ACGT 3 cut(s) 189, 590, 716
TasI AATT 5 cut(s) 144, 276, 308, 387, 461
TatI WGTACW 1 cut(s) 875
Tru1I TTAA 5 cut(s) 384, 540, 888, 983, 1026
Tru9I TTAA 5 cut(s) 384, 540, 888, 983, 1026
TscAI CASTG 1 cut(s) 680
TspDTI ATGAA 3 cut(s) 383, 932, 1028
TspRI CASTG 1 cut(s) 680
Tth111I GACNNNGTC 1 cut(s) 137
XapI RAATTY 2 cut(s) 387, 461
XceI RCATGY 2 cut(s) 75, 355
XhoI CTCGAG 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 815
XspI CTAG 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.