Rroxscaffold_1G00038670

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000188
Physical Location & Seq
Reverse (-)
56193841 .. 56199062
5222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00038670.1

Sequence Viewer

Length: 1410 bp
ATGAGCAACTTAGATCAGATGGGTAGCAGTGATATAGAAAAGGGTAAAGCGGATGAAAGCGTTTCAATTCATCAAGACCGGAGCGGTATGACTATTGAACAATGGAAACGCACCTTCAATTCTGAGATTTTGGAGGCCAAATCATCACCTGTGCCTTTTTCATGTTGCATCTTCAAAGTTCCTGAGGTGCTACGAAGACAAGAAAAGGAGGCATACGAACCTGACGTAGTCTCAATCGGTCCCTTTCACCGAGGTGATGATAAATTTCAACTCGTGGAAAATGTGAAAAAATGGTATTTAAACTGTCTTTTCTTGCCCCTGCGCCAGCGCCACCGCCAGACGGTATTGAACATGGATAGATTGATTGAAAGCATCAAGGGACAGGTAATACGCGCCCGGGGTTATTATTCAGACCCATGCTATCATCTTGACCAAAAGGACTTCATAGAGATGCTCATACTCGATGGTTGTTTCTTAATAGAATTATTTCGGAAGGCACCTTCTGAGCATACAGAAGATCGACAAGATAAAGACGACCCTATCTTCAACATGCCTTGTATGCTCGAATACCTGTACCATGATCTTCTGTTGCTAGAAAATCAGCTACCTTGGTTTGTGCTCGAGTCTATCTATAACCTAATTGAGGATGGTAGCCCTAGAGCACCCCTCAGTCAAGTAGTAATAGACTTCTTCAAAAATTCAGTGGCTGAAGCTAAAATTTTTAGCTATCCCGTTCCCAAGTCTCCCAGCAAGGTTGAGATTCTTCACATACTTGATCTGATAAGAACTTCCCTCGTTCAGGAATATCTGGAACAGACAGACCAAAAGGAGACCCCCGCATCAAAGTTGGTAAACCACTTGCCACAGAGGATACCTAGTGCTGCTGCTCTTTCAGAGGCGGGAGTTAAATTTAGAAAGGGCCCCTCAGGTTGCATATTGAACATAACGTTCCAAGGTGGCATTTTCACCATTCCTCCTCTGGCTATCGATGAAAGGACAGGTCCTATGTTCAGGAACCTTATGGCCTACGAACAGTGTTATTGGAGTTGCAAGCACATGATAACATCCTACGCGGTTTTGATGGATAACCTCATCGATACGAACAAGGATGTGGATCTTCTATGTGAAAAACATATAGTAGCCAACTGGTTGAGTGCCGATGATGCTTCGAAGTTCTTCAACGATCTATACAATGACACCACAGTCATTGACTATGTCTACAAGGGAGTTTGCGATGAAGTGCATTCATATCGCAAAGTACCATGGCACAAGTGGAGAAAGAAATTGAAACGTGATTATTTTGAAACACCATGGTCTACCATCTCTTTTATTGCAGCTTTTGTCCTCCTGGTCCTTACCTTCTTGCAGACCATATACACACTCCAACCGTACTATCATCCCCGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

469

Amino Acids

54.52

Weight (kDa)

5.86

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 57 - 452 9.1e-114 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1202
AccB1I GGYRCC 1 cut(s) 496
AccBSI CCGCTC 2 cut(s) 84, 1404
AccI GTMKAC 2 cut(s) 1218, 1316
AccII CGCG 2 cut(s) 393, 1073
AciI CCGC 7 cut(s) 50, 84, 334, 837, 899, 1073, 1402
AclI AACGTT 1 cut(s) 947
AclWI GGATC 1 cut(s) 1122
AcsI RAATTY 4 cut(s) 263, 697, 717, 908
AcuI CTGAAG 1 cut(s) 729
AfaI GTAC 3 cut(s) 575, 1260, 1391
AfiI CCNNNNNNNGG 3 cut(s) 340, 643, 799
AjnI CCWGG 1 cut(s) 1347
AleI CACNNNNGTG 1 cut(s) 252
AluBI AGCT 4 cut(s) 604, 713, 726, 1337
AluI AGCT 4 cut(s) 604, 713, 726, 1337
Alw21I GWGCWC 2 cut(s) 621, 664
Alw26I GTCTC 3 cut(s) 235, 747, 824
AlwI GGATC 1 cut(s) 1122
AlwNI CAGNNNCTG 1 cut(s) 707
Ama87I CYCGRG 2 cut(s) 396, 620
AoxI GGCC 3 cut(s) 135, 919, 1023
ApaI GGGCCC 1 cut(s) 923
ApeKI GCWGC 3 cut(s) 881, 884, 1334
ApoI RAATTY 4 cut(s) 263, 697, 717, 908
Asp700I GAANNNNTTC 2 cut(s) 486, 1175
AspLEI GCGC 3 cut(s) 324, 330, 395
AspS9I GGNCC 5 cut(s) 239, 919, 920, 1001, 1351
AsuC2I CCSGG 2 cut(s) 397, 398
AsuHPI GGTGA 4 cut(s) 138, 239, 266, 958
AsuII TTCGAA 1 cut(s) 1169
AvaI CYCGRG 2 cut(s) 396, 620
AvaII GGWCC 3 cut(s) 239, 1001, 1351
AxyI CCTNAGG 2 cut(s) 183, 925
BaeGI GKGCMC 1 cut(s) 923
BanI GGYRCC 1 cut(s) 496
BanII GRGCYC 1 cut(s) 923
BauI CACGAG 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 2 cut(s) 621, 664
BbvI GCAGC 3 cut(s) 868, 871, 1346
BccI CCATC 5 cut(s) 13, 458, 641, 1075, 1328
BcgI CGANNNNNNTGC 2 cut(s) 1232, 1266
BciT130I CCWGG 1 cut(s) 1349
BciVI GTATCC 1 cut(s) 864
BcnI CCSGG 2 cut(s) 397, 398
BcoDI GTCTC 3 cut(s) 235, 747, 824
BfaI CTAG 3 cut(s) 593, 657, 876
BfoI RGCGCY 1 cut(s) 331
BfuI GTATCC 1 cut(s) 864
BisI GCNGC 3 cut(s) 882, 885, 1335
BlsI GCNGC 3 cut(s) 883, 886, 1336
Bme1390I CCNGG 3 cut(s) 397, 398, 1349
Bme18I GGWCC 3 cut(s) 239, 1001, 1351
BmeT110I CYCGRG 2 cut(s) 396, 620
BmgT120I GGNCC 5 cut(s) 239, 919, 920, 1001, 1351
BmiI GGNNCC 5 cut(s) 241, 498, 921, 922, 1016
BmrFI CCNGG 3 cut(s) 397, 398, 1349
BmsI GCATC 5 cut(s) 177, 381, 441, 848, 1153
BpiI GAAGAC 1 cut(s) 202
BplI GAGNNNNNCTC 2 cut(s) 651, 683
Bpu14I TTCGAA 1 cut(s) 1169
BpuMI CCSGG 2 cut(s) 397, 398
Bsa29I ATCGAT 2 cut(s) 987, 1095
BsaBI GATNNNNATC 1 cut(s) 1113
BsaI GGTCTC 1 cut(s) 824
BsaJI CCNNGG 7 cut(s) 250, 396, 397, 608, 952, 1262, 1310
BsaWI WCCGGW 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 958, 988
Bsc4I CCNNNNNNNGG 3 cut(s) 340, 643, 799
Bse1I ACTGG 1 cut(s) 1151
Bse21I CCTNAGG 2 cut(s) 183, 925
Bse8I GATNNNNATC 1 cut(s) 1113
BseBI CCWGG 1 cut(s) 1349
BseCI ATCGAT 2 cut(s) 987, 1095
BseDI CCNNGG 7 cut(s) 250, 396, 397, 608, 952, 1262, 1310
BseGI GGATG 5 cut(s) 58, 652, 1064, 1114, 1396
BseJI GATNNNNATC 1 cut(s) 1113
BseLI CCNNNNNNNGG 3 cut(s) 340, 643, 799
BseMII CTCAG 5 cut(s) 114, 174, 495, 682, 939
BseNI ACTGG 1 cut(s) 1151
BseRI GAGGAG 1 cut(s) 966
BseSI GKGCMC 1 cut(s) 923
BseXI GCAGC 3 cut(s) 868, 871, 1346
BseYI CCCAGC 1 cut(s) 746
Bsh1236I CGCG 2 cut(s) 393, 1073
BshFI GGCC 3 cut(s) 137, 921, 1025
BshNI GGYRCC 1 cut(s) 496
BshVI ATCGAT 2 cut(s) 987, 1095
BsiHKAI GWGCWC 2 cut(s) 621, 664
BsiHKCI CYCGRG 2 cut(s) 396, 620
BsiSI CCGG 2 cut(s) 79, 397
BslFI GGGAC 2 cut(s) 225, 393
BslI CCNNNNNNNGG 3 cut(s) 340, 643, 799
BsmAI GTCTC 3 cut(s) 235, 747, 824
BsmFI GGGAC 2 cut(s) 225, 393
BsmI GAATGC 1 cut(s) 1243
BsnI GGCC 3 cut(s) 137, 921, 1025
Bso31I GGTCTC 1 cut(s) 824
BsoBI CYCGRG 2 cut(s) 396, 620
Bsp119I TTCGAA 1 cut(s) 1169
Bsp120I GGGCCC 1 cut(s) 919
Bsp1286I GDGCHC 3 cut(s) 621, 664, 923
Bsp143I GATC 6 cut(s) 13, 517, 580, 775, 1114, 1183
Bsp19I CCATGG 2 cut(s) 1262, 1310
BspACI CCGC 7 cut(s) 50, 84, 334, 837, 899, 1073, 1402
BspANI GGCC 3 cut(s) 137, 921, 1025
BspCNI CTCAG 5 cut(s) 115, 175, 496, 681, 938
BspDI ATCGAT 2 cut(s) 987, 1095
BspFNI CGCG 2 cut(s) 393, 1073
BspHI TCATGA 1 cut(s) 1406
BspLI GGNNCC 5 cut(s) 241, 498, 921, 922, 1016
BspPI GGATC 1 cut(s) 1122
BspT104I TTCGAA 1 cut(s) 1169
BspT107I GGYRCC 1 cut(s) 496
BspTNI GGTCTC 1 cut(s) 824
BsrBI CCGCTC 2 cut(s) 84, 1404
BsrI ACTGG 1 cut(s) 1151
BssECI CCNNGG 7 cut(s) 250, 396, 397, 608, 952, 1262, 1310
BssMI GATC 6 cut(s) 13, 517, 580, 775, 1114, 1183
BssSI CACGAG 1 cut(s) 272
BssT1I CCWWGG 4 cut(s) 608, 952, 1262, 1310
Bst2BI CACGAG 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 1349
Bst4CI ACNGT 5 cut(s) 305, 343, 1035, 1204, 1389
BstBI TTCGAA 1 cut(s) 1169
BstC8I GCNNGC 2 cut(s) 326, 1052
BstDEI CTNAG 6 cut(s) 10, 123, 183, 504, 668, 925
BstDSI CCRYGG 2 cut(s) 1262, 1310
BstENI CCTNNNNNAGG 2 cut(s) 641, 797
BstF5I GGATG 5 cut(s) 58, 652, 1064, 1114, 1396
BstFNI CGCG 2 cut(s) 393, 1073
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 3 cut(s) 324, 330, 395
BstKTI GATC 6 cut(s) 16, 520, 583, 778, 1117, 1186
BstMAI GTCTC 3 cut(s) 235, 747, 824
BstMBI GATC 6 cut(s) 13, 517, 580, 775, 1114, 1183
BstMWI GCNNNNNNNGC 2 cut(s) 559, 1163
BstNI CCWGG 1 cut(s) 1349
BstNSI RCATGY 1 cut(s) 553
BstSCI CCNGG 3 cut(s) 395, 396, 1347
BstSLI GKGCMC 1 cut(s) 923
BstUI CGCG 2 cut(s) 393, 1073
BstV1I GCAGC 3 cut(s) 868, 871, 1346
BstV2I GAAGAC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 1114
BstYI RGATCY 1 cut(s) 1114
Bsu15I ATCGAT 2 cut(s) 987, 1095
Bsu36I CCTNAGG 2 cut(s) 183, 925
BsuI GTATCC 1 cut(s) 864
BsuRI GGCC 3 cut(s) 137, 921, 1025
BsuTUI ATCGAT 2 cut(s) 987, 1095
BtgI CCRYGG 2 cut(s) 1262, 1310
BtgZI GCGATG 1 cut(s) 1248
BtsCI GGATG 5 cut(s) 58, 652, 1064, 1114, 1396
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 3 cut(s) 34, 708, 1040
Cac8I GCNNGC 2 cut(s) 326, 1052
CaiI CAGNNNCTG 1 cut(s) 707
CciI TCATGA 1 cut(s) 1406
CfoI GCGC 3 cut(s) 324, 330, 395
Cfr13I GGNCC 5 cut(s) 239, 919, 920, 1001, 1351
Cfr9I CCCGGG 1 cut(s) 396
ClaI ATCGAT 2 cut(s) 987, 1095
Csp6I GTAC 3 cut(s) 574, 1259, 1390
CspCI CAANNNNNGTGG 2 cut(s) 1189, 1224
CviAII CATG 9 cut(s) 162, 352, 417, 550, 578, 1057, 1263, 1311, 1407
CviQI GTAC 3 cut(s) 574, 1259, 1390
DdeI CTNAG 6 cut(s) 10, 123, 183, 504, 668, 925
DpnI GATC 6 cut(s) 15, 519, 582, 777, 1116, 1185
DpnII GATC 6 cut(s) 13, 517, 580, 775, 1114, 1183
DraI TTTAAA 1 cut(s) 300
DrdI GACNNNNNNGTC 1 cut(s) 1202
DseDI GACNNNNNNGTC 1 cut(s) 1202
Eco130I CCWWGG 4 cut(s) 608, 952, 1262, 1310
Eco24I GRGCYC 1 cut(s) 923
Eco31I GGTCTC 1 cut(s) 824
Eco47I GGWCC 3 cut(s) 239, 1001, 1351
Eco57I CTGAAG 1 cut(s) 729
Eco81I CCTNAGG 2 cut(s) 183, 925
Eco88I CYCGRG 2 cut(s) 396, 620
EcoNI CCTNNNNNAGG 2 cut(s) 641, 797
EcoO109I RGGNCCY 3 cut(s) 919, 920, 1001
EcoRII CCWGG 1 cut(s) 1347
EcoT14I CCWWGG 4 cut(s) 608, 952, 1262, 1310
EcoT38I GRGCYC 1 cut(s) 923
ErhI CCWWGG 4 cut(s) 608, 952, 1262, 1310
FaeI CATG 9 cut(s) 165, 355, 420, 553, 581, 1060, 1266, 1314, 1410
FaqI GGGAC 2 cut(s) 225, 393
FatI CATG 9 cut(s) 161, 351, 416, 549, 577, 1056, 1262, 1310, 1406
FauI CCCGC 2 cut(s) 844, 892
FblI GTMKAC 2 cut(s) 1218, 1316
Fnu4HI GCNGC 3 cut(s) 882, 885, 1335
FokI GGATG 5 cut(s) 65, 659, 1051, 1121, 1383
FriOI GRGCYC 1 cut(s) 923
Fsp4HI GCNGC 3 cut(s) 882, 885, 1335
FspBI CTAG 3 cut(s) 593, 657, 876
GlaI GCGC 3 cut(s) 323, 329, 394
GluI GCNGC 3 cut(s) 882, 885, 1335
GsaI CCCAGC 1 cut(s) 750
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 3 cut(s) 137, 921, 1025
HapII CCGG 2 cut(s) 79, 397
HhaI GCGC 3 cut(s) 324, 330, 395
Hin1II CATG 9 cut(s) 165, 355, 420, 553, 581, 1060, 1266, 1314, 1410
Hin6I GCGC 3 cut(s) 322, 328, 393
HinP1I GCGC 3 cut(s) 322, 328, 393
HinfI GANTC 2 cut(s) 623, 760
HpaII CCGG 2 cut(s) 79, 397
HphI GGTGA 4 cut(s) 138, 239, 266, 958
Hpy166II GTNNAC 3 cut(s) 853, 1219, 1317
Hpy188I TCNGA 7 cut(s) 18, 124, 412, 492, 505, 780, 895
Hpy188III TCNNGA 7 cut(s) 74, 182, 428, 800, 809, 1012, 1407
Hpy8I GTNNAC 3 cut(s) 853, 1219, 1317
HpyAV CCTTC 4 cut(s) 124, 487, 510, 1369
HpyCH4III ACNGT 5 cut(s) 305, 343, 1035, 1204, 1389
HpyCH4IV ACGT 3 cut(s) 225, 947, 1291
HpyCH4V TGCA 6 cut(s) 168, 933, 1050, 1243, 1334, 1366
HpyF10VI GCNNNNNNNGC 2 cut(s) 559, 1163
HpyF3I CTNAG 6 cut(s) 10, 123, 183, 504, 668, 925
HpySE526I ACGT 3 cut(s) 225, 947, 1291
Hsp92II CATG 9 cut(s) 165, 355, 420, 553, 581, 1060, 1266, 1314, 1410
HspAI GCGC 3 cut(s) 322, 328, 393
Kzo9I GATC 6 cut(s) 13, 517, 580, 775, 1114, 1183
LmnI GCTCC 1 cut(s) 81
Lsp1109I GCAGC 3 cut(s) 868, 871, 1346
LweI GCATC 5 cut(s) 177, 381, 441, 848, 1153
MaeI CTAG 3 cut(s) 593, 657, 876
MaeII ACGT 3 cut(s) 225, 947, 1291
MalI GATC 6 cut(s) 15, 519, 582, 777, 1116, 1185
MbiI CCGCTC 2 cut(s) 84, 1404
MboI GATC 6 cut(s) 13, 517, 580, 775, 1114, 1183
MboII GAAGA 9 cut(s) 163, 207, 527, 535, 575, 682, 755, 1109, 1168
MflI RGATCY 1 cut(s) 1114
MhlI GDGCHC 3 cut(s) 621, 664, 923
MluCI AATT 9 cut(s) 66, 118, 263, 482, 639, 697, 717, 908, 1283
MlyI GAGTC 1 cut(s) 632
MmeI TCCRAC 1 cut(s) 1408
MroXI GAANNNNTTC 2 cut(s) 486, 1175
MseI TTAA 3 cut(s) 299, 476, 906
MslI CAYNNNNRTG 2 cut(s) 252, 449
MspI CCGG 2 cut(s) 79, 397
MspR9I CCNGG 3 cut(s) 397, 398, 1349
Mva1269I GAATGC 1 cut(s) 1243
MvaI CCWGG 1 cut(s) 1349
MvnI CGCG 2 cut(s) 393, 1073
MwoI GCNNNNNNNGC 2 cut(s) 559, 1163
NciI CCSGG 2 cut(s) 397, 398
NcoI CCATGG 2 cut(s) 1262, 1310
NdeII GATC 6 cut(s) 13, 517, 580, 775, 1114, 1183
NlaIII CATG 9 cut(s) 165, 355, 420, 553, 581, 1060, 1266, 1314, 1410
NlaIV GGNNCC 5 cut(s) 241, 498, 921, 922, 1016
NspI RCATGY 1 cut(s) 553
NspV TTCGAA 1 cut(s) 1169
OliI CACNNNNGTG 1 cut(s) 252
PaeR7I CTCGAG 1 cut(s) 620
PagI TCATGA 1 cut(s) 1406
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 1243
PdmI GAANNNNTTC 2 cut(s) 486, 1175
PfeI GAWTC 1 cut(s) 760
PflFI GACNNNGTC 2 cut(s) 227, 1214
PkrI GCNGC 3 cut(s) 883, 886, 1336
PleI GAGTC 1 cut(s) 631
PpsI GAGTC 1 cut(s) 631
PpuMI RGGWCCY 1 cut(s) 1001
Psp1406I AACGTT 1 cut(s) 947
Psp5II RGGWCCY 1 cut(s) 1001
Psp6I CCWGG 1 cut(s) 1347
PspFI CCCAGC 1 cut(s) 746
PspGI CCWGG 1 cut(s) 1347
PspN4I GGNNCC 5 cut(s) 241, 498, 921, 922, 1016
PspOMI GGGCCC 1 cut(s) 919
PspPI GGNCC 5 cut(s) 239, 919, 920, 1001, 1351
PspPPI RGGWCCY 1 cut(s) 1001
PspXI VCTCGAGB 1 cut(s) 620
PstNI CAGNNNCTG 1 cut(s) 707
PsuI RGATCY 1 cut(s) 1114
PsyI GACNNNGTC 2 cut(s) 227, 1214
RsaI GTAC 3 cut(s) 575, 1260, 1391
RsaNI GTAC 3 cut(s) 574, 1259, 1390
RseI CAYNNNNRTG 2 cut(s) 252, 449
SaqAI TTAA 3 cut(s) 299, 476, 906
SatI GCNGC 3 cut(s) 882, 885, 1335
Sau3AI GATC 6 cut(s) 13, 517, 580, 775, 1114, 1183
Sau96I GGNCC 5 cut(s) 239, 919, 920, 1001, 1351
SchI GAGTC 1 cut(s) 632
ScrFI CCNGG 3 cut(s) 397, 398, 1349
SduI GDGCHC 3 cut(s) 621, 664, 923
SfaNI GCATC 5 cut(s) 177, 381, 441, 848, 1153
Sfr274I CTCGAG 1 cut(s) 620
SfuI TTCGAA 1 cut(s) 1169
SinI GGWCC 3 cut(s) 239, 1001, 1351
SlaI CTCGAG 1 cut(s) 620
SmaI CCCGGG 1 cut(s) 398
SmiMI CAYNNNNRTG 2 cut(s) 252, 449
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
Sse9I AATT 9 cut(s) 66, 118, 263, 482, 639, 697, 717, 908, 1283
SsiI CCGC 7 cut(s) 50, 84, 334, 837, 899, 1073, 1402
SspMI CTAG 3 cut(s) 593, 657, 876
StyD4I CCNGG 3 cut(s) 395, 396, 1347
StyI CCWWGG 4 cut(s) 608, 952, 1262, 1310
TaaI ACNGT 5 cut(s) 305, 343, 1035, 1204, 1389
TaiI ACGT 3 cut(s) 228, 950, 1294
TaqI TCGA 7 cut(s) 462, 520, 564, 621, 987, 1095, 1169
TaqII GACCGA 1 cut(s) 227
TasI AATT 9 cut(s) 66, 118, 263, 482, 639, 697, 717, 908, 1283
TfiI GAWTC 1 cut(s) 760
Tru1I TTAA 3 cut(s) 299, 476, 906
Tru9I TTAA 3 cut(s) 299, 476, 906
TscAI CASTG 3 cut(s) 34, 708, 1040
TseI GCWGC 3 cut(s) 881, 884, 1334
TspDTI ATGAA 7 cut(s) 59, 69, 150, 433, 1005, 1236, 1251
TspMI CCCGGG 1 cut(s) 396
TspRI CASTG 3 cut(s) 34, 708, 1040
Tth111I GACNNNGTC 2 cut(s) 227, 1214
VpaK11BI GGWCC 3 cut(s) 239, 1001, 1351
XagI CCTNNNNNAGG 2 cut(s) 641, 797
XapI RAATTY 4 cut(s) 263, 697, 717, 908
XceI RCATGY 1 cut(s) 553
XcmI CCANNNNNNNNNTGG 2 cut(s) 976, 1269
XhoI CTCGAG 1 cut(s) 620
XmaI CCCGGG 1 cut(s) 396
XmiI GTMKAC 2 cut(s) 1218, 1316
XmnI GAANNNNTTC 2 cut(s) 486, 1175
XspI CTAG 3 cut(s) 593, 657, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.