Rorug05G0406000

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000188
Physical Location & Seq
Reverse (-)
55939032 .. 55942553
3522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0406000.1

Sequence Viewer

Length: 1158 bp
ATGGCAACCGAAGTACCGGAGCAAGTCCCTGCCGACGAAATCAAATCGATATTGAGTCTGGATGAGAGGTACAACCTACTTAAGAGCATCGCGGAGGAGTGTATCCTAGAAGAAGAGCTCAAGAATTTGCTGGATAAGAAGGCCGAGCCGATCTGCTACGACGGCTTTGAGCCCTCCGGTAGAATGCATATTGCTCAGGGAGTTTTGAAGGCAATTAATGTGAACAAGATGATTGCCGCAGGCTGCAGAGTGAAGATATGGATTGCCGATTGGTTTGCGCAGCTAAACAATAAGATGGGGGGTGATTTGGACAAGATCGAAACTGTGGGGAAGTATTTTATTGAGATATGGAGGTCTGTGGGGATGAATCTGGACAGTGGGAAAGTTGAGTTTTTGTGGTCTTCTAAGGAGATCAATGCCAGGTCACATGAGTACTGGCCGCGTGTAATGGATATTGCCAGGAAAAACAATCTTTCGAGGATCATTAGGTGTAGTCAAATTATGGGTCGTACAGATCAAGAAGAGTTAACTGCTGCCCAGATCCTCTACCCGTGTATGCAATGTGCAGATATTTTCTTCCTGCAGGCTGACATCTGTCAACTCGGTATGGATCAACGTAAAGTGAATGTGCTCGCACGAGAGTACTGTGATGACATCAAGAAGAAAAACAAGCCTATTATCTTGTCACACCATATGCTACCTGGTTTACAGCAAGGGCAGGAGAAAATGTCAAAAAGTGATCTATCCTCCTCCATATTTATGGAAGATGAAGAGGCGGAAGTGAATACAAAGATTAAGAAGGCTTACTGCCCTCCAGAAAAGGTCGAAGGCAATCCCTGTTTGGAATACGTACAGTACCTCATTTTTCCTTGGTTTCATGAGTTCACCGTAGAGTGCAGTGAAAAGAATGGTGGAGATAGCACTTTCAAAGAGTTTGAAGAATTGAGTGTTGCTTATGCAAAAGGTGAGGTCCATCCTGGAGACCTCAAACCATCTTTGGCAAAAGCATTGAATAGAATACTGGAGCCTGTACGATCCCATTTCAAGAATGACAAAGCTGCCAAACAGCTATTACAAAGTGTAAAGAGTCACCAGATGATGACAGTAATGGAGCTAGGACTTCTCACGTTTGCCCCTACTCCTGCAATTGTGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

385

Amino Acids

43.78

Weight (kDa)

5.65

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1b PF00579 47 - 341 2.2e-61 tRNA synthetases class I (W and Y)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 279
AccII CGCG 2 cut(s) 92, 442
AciI CCGC 4 cut(s) 92, 237, 440, 776
AclWI GGATC 4 cut(s) 488, 535, 618, 1029
AcoI YGGCCR 1 cut(s) 437
AcsI RAATTY 1 cut(s) 124
AfaI GTAC 8 cut(s) 15, 71, 434, 511, 644, 852, 857, 1032
AflII CTTAAG 1 cut(s) 80
AgsI TTSAA 5 cut(s) 208, 928, 938, 1012, 1045
AjnI CCWGG 4 cut(s) 419, 458, 700, 976
AluBI AGCT 5 cut(s) 118, 283, 1058, 1069, 1114
AluI AGCT 5 cut(s) 118, 283, 1058, 1069, 1114
Alw21I GWGCWC 2 cut(s) 120, 633
Alw26I GTCTC 1 cut(s) 975
AlwI GGATC 4 cut(s) 488, 535, 618, 1029
AoxI GGCC 2 cut(s) 141, 437
ApeKI GCWGC 4 cut(s) 243, 280, 533, 1058
ApoI RAATTY 1 cut(s) 124
ArsI GACNNNNNNTTYG 2 cut(s) 490, 522
AseI ATTAAT 1 cut(s) 216
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 970
AsuHPI GGTGA 4 cut(s) 314, 877, 977, 1082
AvaII GGWCC 1 cut(s) 970
BaeI ACNNNNGTAYC 1 cut(s) 30
BanII GRGCYC 2 cut(s) 120, 174
BauI CACGAG 1 cut(s) 636
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 2 cut(s) 120, 633
BbvI GCAGC 4 cut(s) 230, 292, 520, 1045
BccI CCATC 3 cut(s) 289, 981, 1000
BceAI ACGGC 1 cut(s) 178
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BciT130I CCWGG 4 cut(s) 421, 460, 702, 978
BciVI GTATCC 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 975
BfaI CTAG 2 cut(s) 107, 1115
BfmI CTRYAG 2 cut(s) 244, 581
BfrI CTTAAG 1 cut(s) 80
BfuI GTATCC 1 cut(s) 113
BisI GCNGC 6 cut(s) 237, 244, 281, 440, 534, 1059
BlsI GCNGC 6 cut(s) 238, 245, 282, 441, 535, 1060
BmcAI AGTACT 2 cut(s) 434, 644
Bme1390I CCNGG 4 cut(s) 421, 460, 702, 978
Bme18I GGWCC 1 cut(s) 970
BmgT120I GGNCC 1 cut(s) 970
BmiI GGNNCC 1 cut(s) 1026
BmrFI CCNGG 4 cut(s) 421, 460, 702, 978
BmsI GCATC 1 cut(s) 96
BoxI GACNNNNGTC 1 cut(s) 594
BpiI GAAGAC 1 cut(s) 393
BpmI CTGGAG 3 cut(s) 798, 999, 1043
Bpu10I CCTNAGC 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 104
Bsa29I ATCGAT 1 cut(s) 47
BsaAI YACGTR 1 cut(s) 850
BsaI GGTCTC 1 cut(s) 975
BsaJI CCNNGG 1 cut(s) 869
BsaWI WCCGGW 2 cut(s) 16, 176
BsaXI ACNNNNNCTCC 2 cut(s) 713, 743
Bse1I ACTGG 2 cut(s) 440, 1026
Bse3DI GCAATG 1 cut(s) 566
BseBI CCWGG 4 cut(s) 421, 460, 702, 978
BseCI ATCGAT 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 869
BseGI GGATG 3 cut(s) 67, 369, 973
BseMI GCAATG 1 cut(s) 566
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 2 cut(s) 440, 1026
BseRI GAGGAG 2 cut(s) 110, 739
BseXI GCAGC 4 cut(s) 230, 292, 520, 1045
BsgI GTGCAG 2 cut(s) 585, 916
Bsh1236I CGCG 2 cut(s) 92, 442
BshFI GGCC 2 cut(s) 143, 439
BshVI ATCGAT 1 cut(s) 47
BsiHKAI GWGCWC 2 cut(s) 120, 633
BsiSI CCGG 2 cut(s) 17, 177
BslFI GGGAC 1 cut(s) 11
BsmAI GTCTC 1 cut(s) 975
BsmFI GGGAC 1 cut(s) 11
BsmI GAATGC 1 cut(s) 189
BsnI GGCC 2 cut(s) 143, 439
Bso31I GGTCTC 1 cut(s) 975
Bsp1286I GDGCHC 3 cut(s) 120, 174, 633
Bsp143I GATC 9 cut(s) 150, 315, 411, 480, 514, 540, 610, 739, 1034
BspACI CCGC 4 cut(s) 92, 237, 440, 776
BspANI GGCC 2 cut(s) 143, 439
BspCNI CTCAG 1 cut(s) 208
BspDI ATCGAT 1 cut(s) 47
BspFNI CGCG 2 cut(s) 92, 442
BspHI TCATGA 1 cut(s) 877
BspLI GGNNCC 1 cut(s) 1026
BspMAI CTGCAG 2 cut(s) 248, 585
BspPI GGATC 4 cut(s) 488, 535, 618, 1029
BspQI GCTCTTC 1 cut(s) 108
BspTI CTTAAG 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 975
BsrDI GCAATG 1 cut(s) 566
BsrI ACTGG 2 cut(s) 440, 1026
BssECI CCNNGG 1 cut(s) 869
BssMI GATC 9 cut(s) 150, 315, 411, 480, 514, 540, 610, 739, 1034
BssSI CACGAG 1 cut(s) 636
BssT1I CCWWGG 1 cut(s) 869
Bst2BI CACGAG 1 cut(s) 636
Bst2UI CCWGG 4 cut(s) 421, 460, 702, 978
Bst4CI ACNGT 6 cut(s) 325, 377, 647, 855, 889, 1105
Bst6I CTCTTC 3 cut(s) 108, 516, 765
BstAFI CTTAAG 1 cut(s) 80
BstBAI YACGTR 1 cut(s) 850
BstC8I GCNNGC 3 cut(s) 241, 585, 633
BstDEI CTNAG 2 cut(s) 195, 405
BstF5I GGATG 3 cut(s) 67, 369, 973
BstFNI CGCG 2 cut(s) 92, 442
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 9 cut(s) 153, 318, 414, 483, 517, 543, 613, 742, 1037
BstMAI GTCTC 1 cut(s) 975
BstMBI GATC 9 cut(s) 150, 315, 411, 480, 514, 540, 610, 739, 1034
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 4 cut(s) 421, 460, 702, 978
BstPAI GACNNNNGTC 1 cut(s) 594
BstSCI CCNGG 4 cut(s) 419, 458, 700, 976
BstSFI CTRYAG 2 cut(s) 244, 581
BstSNI TACGTA 1 cut(s) 850
BstUI CGCG 2 cut(s) 92, 442
BstV1I GCAGC 4 cut(s) 230, 292, 520, 1045
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 1 cut(s) 540
BstXI CCANNNNNNTGG 1 cut(s) 760
BstYI RGATCY 1 cut(s) 540
Bsu15I ATCGAT 1 cut(s) 47
BsuI GTATCC 1 cut(s) 113
BsuRI GGCC 2 cut(s) 143, 439
BsuTUI ATCGAT 1 cut(s) 47
BtgZI GCGATG 1 cut(s) 73
BtsCI GGATG 3 cut(s) 67, 369, 973
BtsI GCAGTG 1 cut(s) 904
BtsIMutI CAGTG 2 cut(s) 382, 904
Cac8I GCNNGC 3 cut(s) 241, 585, 633
CciI TCATGA 1 cut(s) 877
CfoI GCGC 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 970
ClaI ATCGAT 1 cut(s) 47
CsiI ACCWGGT 1 cut(s) 700
Csp6I GTAC 8 cut(s) 14, 70, 433, 510, 643, 851, 856, 1031
CviAII CATG 2 cut(s) 428, 878
CviQI GTAC 8 cut(s) 14, 70, 433, 510, 643, 851, 856, 1031
DdeI CTNAG 2 cut(s) 195, 405
DpnI GATC 9 cut(s) 152, 317, 413, 482, 516, 542, 612, 741, 1036
DpnII GATC 9 cut(s) 150, 315, 411, 480, 514, 540, 610, 739, 1034
EaeI YGGCCR 1 cut(s) 437
Eam1104I CTCTTC 3 cut(s) 108, 516, 765
EarI CTCTTC 3 cut(s) 108, 516, 765
EciI GGCGGA 1 cut(s) 791
Ecl136II GAGCTC 1 cut(s) 118
Eco105I TACGTA 1 cut(s) 850
Eco130I CCWWGG 1 cut(s) 869
Eco24I GRGCYC 2 cut(s) 120, 174
Eco31I GGTCTC 1 cut(s) 975
Eco47I GGWCC 1 cut(s) 970
Eco53kI GAGCTC 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 118
EcoRII CCWGG 4 cut(s) 419, 458, 700, 976
EcoT14I CCWWGG 1 cut(s) 869
EcoT22I ATGCAT 1 cut(s) 189
EcoT38I GRGCYC 2 cut(s) 120, 174
ErhI CCWWGG 1 cut(s) 869
FaeI CATG 2 cut(s) 431, 881
FaqI GGGAC 1 cut(s) 11
FatI CATG 2 cut(s) 427, 877
FauNDI CATATG 1 cut(s) 693
Fnu4HI GCNGC 6 cut(s) 237, 244, 281, 440, 534, 1059
FokI GGATG 3 cut(s) 74, 376, 960
FriOI GRGCYC 2 cut(s) 120, 174
Fsp4HI GCNGC 6 cut(s) 237, 244, 281, 440, 534, 1059
FspBI CTAG 2 cut(s) 107, 1115
FspI TGCGCA 1 cut(s) 279
GlaI GCGC 1 cut(s) 279
GluI GCNGC 6 cut(s) 237, 244, 281, 440, 534, 1059
GsuI CTGGAG 3 cut(s) 798, 999, 1043
HaeIII GGCC 2 cut(s) 143, 439
HapII CCGG 2 cut(s) 17, 177
HhaI GCGC 1 cut(s) 280
Hin1II CATG 2 cut(s) 431, 881
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HincII GTYRAC 2 cut(s) 528, 599
HindII GTYRAC 2 cut(s) 528, 599
HinfI GANTC 3 cut(s) 55, 367, 1087
HpaI GTTAAC 1 cut(s) 528
HpaII CCGG 2 cut(s) 17, 177
HphI GGTGA 4 cut(s) 314, 877, 977, 1082
Hpy166II GTNNAC 5 cut(s) 223, 528, 599, 707, 885
Hpy188III TCNNGA 8 cut(s) 59, 121, 371, 518, 658, 815, 878, 1045
Hpy8I GTNNAC 5 cut(s) 223, 528, 599, 707, 885
Hpy99I CGWCG 2 cut(s) 38, 164
HpyAV CCTTC 4 cut(s) 133, 202, 793, 821
HpyCH4III ACNGT 6 cut(s) 325, 377, 647, 855, 889, 1105
HpyCH4IV ACGT 3 cut(s) 616, 849, 1127
HpyCH4V TGCA 8 cut(s) 187, 246, 559, 566, 583, 897, 959, 1145
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 2 cut(s) 195, 405
HpySE526I ACGT 3 cut(s) 616, 849, 1127
Hsp92II CATG 2 cut(s) 431, 881
HspAI GCGC 1 cut(s) 278
KspAI GTTAAC 1 cut(s) 528
Kzo9I GATC 9 cut(s) 150, 315, 411, 480, 514, 540, 610, 739, 1034
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 3 cut(s) 19, 1024, 1111
Lsp1109I GCAGC 4 cut(s) 230, 292, 520, 1045
LweI GCATC 1 cut(s) 96
MabI ACCWGGT 1 cut(s) 700
MaeI CTAG 2 cut(s) 107, 1115
MaeII ACGT 3 cut(s) 616, 849, 1127
MaeIII GTNAC 3 cut(s) 423, 684, 1088
MalI GATC 9 cut(s) 152, 317, 413, 482, 516, 542, 612, 741, 1036
MboI GATC 9 cut(s) 150, 315, 411, 480, 514, 540, 610, 739, 1034
MfeI CAATTG 1 cut(s) 1146
MflI RGATCY 1 cut(s) 540
MhlI GDGCHC 3 cut(s) 120, 174, 633
MluCI AATT 5 cut(s) 124, 213, 498, 941, 1146
MlyI GAGTC 2 cut(s) 64, 1096
Mph1103I ATGCAT 1 cut(s) 189
MseI TTAA 4 cut(s) 81, 216, 527, 795
MslI CAYNNNNRTG 1 cut(s) 758
MspCI CTTAAG 1 cut(s) 80
MspI CCGG 2 cut(s) 17, 177
MspR9I CCNGG 4 cut(s) 421, 460, 702, 978
MunI CAATTG 1 cut(s) 1146
Mva1269I GAATGC 1 cut(s) 189
MvaI CCWGG 4 cut(s) 421, 460, 702, 978
MvnI CGCG 2 cut(s) 92, 442
MwoI GCNNNNNNNGC 1 cut(s) 162
NdeI CATATG 1 cut(s) 693
NdeII GATC 9 cut(s) 150, 315, 411, 480, 514, 540, 610, 739, 1034
NlaIII CATG 2 cut(s) 431, 881
NlaIV GGNNCC 1 cut(s) 1026
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 3 cut(s) 423, 684, 1088
NsbI TGCGCA 1 cut(s) 279
NsiI ATGCAT 1 cut(s) 189
PagI TCATGA 1 cut(s) 877
PciSI GCTCTTC 1 cut(s) 108
PctI GAATGC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 367
PfoI TCCNGGA 1 cut(s) 976
PkrI GCNGC 6 cut(s) 238, 245, 282, 441, 535, 1060
PleI GAGTC 2 cut(s) 63, 1095
PpsI GAGTC 2 cut(s) 63, 1095
Ppu21I YACGTR 1 cut(s) 850
PshAI GACNNNNGTC 1 cut(s) 594
PshBI ATTAAT 1 cut(s) 216
Psp124BI GAGCTC 1 cut(s) 120
Psp6I CCWGG 4 cut(s) 419, 458, 700, 976
PspGI CCWGG 4 cut(s) 419, 458, 700, 976
PspN4I GGNNCC 1 cut(s) 1026
PspPI GGNCC 1 cut(s) 970
PstI CTGCAG 2 cut(s) 248, 585
PsuI RGATCY 1 cut(s) 540
RsaI GTAC 8 cut(s) 15, 71, 434, 511, 644, 852, 857, 1032
RsaNI GTAC 8 cut(s) 14, 70, 433, 510, 643, 851, 856, 1031
RseI CAYNNNNRTG 1 cut(s) 758
SacI GAGCTC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 4 cut(s) 81, 216, 527, 795
SatI GCNGC 6 cut(s) 237, 244, 281, 440, 534, 1059
Sau3AI GATC 9 cut(s) 150, 315, 411, 480, 514, 540, 610, 739, 1034
Sau96I GGNCC 1 cut(s) 970
SbfI CCTGCAGG 1 cut(s) 585
ScaI AGTACT 2 cut(s) 434, 644
SchI GAGTC 2 cut(s) 64, 1096
ScrFI CCNGG 4 cut(s) 421, 460, 702, 978
SdaI CCTGCAGG 1 cut(s) 585
SduI GDGCHC 3 cut(s) 120, 174, 633
SexAI ACCWGGT 1 cut(s) 700
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 2 cut(s) 244, 581
SinI GGWCC 1 cut(s) 970
SmiMI CAYNNNNRTG 1 cut(s) 758
SmlI CTYRAG 2 cut(s) 80, 119
SmoI CTYRAG 2 cut(s) 80, 119
SnaBI TACGTA 1 cut(s) 850
Sse8387I CCTGCAGG 1 cut(s) 585
Sse9I AATT 5 cut(s) 124, 213, 498, 941, 1146
SsiI CCGC 4 cut(s) 92, 237, 440, 776
SspMI CTAG 2 cut(s) 107, 1115
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 4 cut(s) 419, 458, 700, 976
StyI CCWWGG 1 cut(s) 869
TaaI ACNGT 6 cut(s) 325, 377, 647, 855, 889, 1105
TaiI ACGT 3 cut(s) 619, 852, 1130
TaqI TCGA 4 cut(s) 47, 318, 476, 825
TasI AATT 5 cut(s) 124, 213, 498, 941, 1146
TatI WGTACW 2 cut(s) 432, 642
TauI GCSGC 2 cut(s) 239, 442
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 4 cut(s) 81, 216, 527, 795
Tru9I TTAA 4 cut(s) 81, 216, 527, 795
TscAI CASTG 2 cut(s) 382, 904
TseFI GTSAC 3 cut(s) 423, 684, 1088
TseI GCWGC 4 cut(s) 243, 280, 533, 1058
Tsp45I GTSAC 3 cut(s) 423, 684, 1088
TspDTI ATGAA 3 cut(s) 380, 783, 866
TspRI CASTG 2 cut(s) 382, 904
Vha464I CTTAAG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 970
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 1 cut(s) 124
XcmI CCANNNNNNNNNTGG 1 cut(s) 698
XspI CTAG 2 cut(s) 107, 1115
ZrmI AGTACT 2 cut(s) 434, 644
Zsp2I ATGCAT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.