Rh2AG566700

calcium-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000188
Physical Location & Seq
Reverse (-)
79771267 .. 79795505
24239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG566700.1

Sequence Viewer

Length: 519 bp
ATGGCTTATTCACCATTCCTCATTTTGGCTATCGATGAGAGGACAGGTTCTTTGTTTAGGAACCTTATGGCCTTCGAGCAGTGCTATCACAGTTGCTTCCATAAGATAACATCCTACGCATTTTTGATGGATAACCTCATCGATACGAGCAAGGATGTGGATCTTCTATGTGAGAAAGATATAATAGGCACCTTGTTGAGTGCTGACGATGCTTCGAAGTTCTTCAACGAGCTATACCATGACGCCACACTCTATGAGTTCTACTACTTGAGACTCTGCGGAGAGGTGCAACAATATTACAAAGTACCATGGAACAGGTGGAGAGAGAAATTGAGACCCGCATTAACCTTGAAAGCCCTGAGAATCAAGAGCAGCGTCAAGAAAGTTAGGATGATGATGGAGGGCAAAACGGTAAATCCTGCAAGTGCATTAACCTTGAAGACCCTGAGAATGCAGAGGAAAGTCAAGAAAGTCAGGATGATGATGGAGGGCAAAACGGTAAATCCTGCAAAAATCTAA

Protein Analysis

172

Amino Acids

20.14

Weight (kDa)

9.47

Isoelectric Point (pI)

30.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 9 - 113 1.1e-30 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 2 cut(s) 279, 339
AclWI GGATC 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 25
AgsI TTSAA 3 cut(s) 226, 352, 439
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw26I GTCTC 2 cut(s) 265, 328
AlwI GGATC 1 cut(s) 168
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 372
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
Asp700I GAANNNNTTC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 3
AsuII TTCGAA 1 cut(s) 215
BanI GGYRCC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 446
BbvI GCAGC 1 cut(s) 384
BccI CCATC 3 cut(s) 121, 391, 478
BcoDI GTCTC 2 cut(s) 265, 328
BisI GCNGC 1 cut(s) 373
BlsI GCNGC 1 cut(s) 374
BmiI GGNNCC 2 cut(s) 62, 190
BmsI GCATC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 446
Bpu14I TTCGAA 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 289
Bsa29I ATCGAT 2 cut(s) 33, 141
BsaBI GATNNNNATC 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse8I GATNNNNATC 1 cut(s) 159
BseCI ATCGAT 2 cut(s) 33, 141
BseDI CCNNGG 1 cut(s) 308
BseGI GGATG 4 cut(s) 110, 160, 396, 483
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMII CTCAG 2 cut(s) 350, 437
BseXI GCAGC 1 cut(s) 384
BshFI GGCC 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 188
BshVI ATCGAT 2 cut(s) 33, 141
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 2 cut(s) 265, 328
BsmI GAATGC 1 cut(s) 456
BsnI GGCC 1 cut(s) 71
Bso31I GGTCTC 1 cut(s) 328
Bsp119I TTCGAA 1 cut(s) 215
Bsp143I GATC 1 cut(s) 160
Bsp19I CCATGG 1 cut(s) 308
BspACI CCGC 2 cut(s) 279, 339
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 351, 438
BspDI ATCGAT 2 cut(s) 33, 141
BspLI GGNNCC 2 cut(s) 62, 190
BspPI GGATC 1 cut(s) 168
BspT104I TTCGAA 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 1 cut(s) 160
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 308
Bst4CI ACNGT 3 cut(s) 92, 412, 499
BstACI GRCGYC 1 cut(s) 243
BstBI TTCGAA 1 cut(s) 215
BstDEI CTNAG 2 cut(s) 359, 446
BstDSI CCRYGG 1 cut(s) 308
BstF5I GGATG 4 cut(s) 110, 160, 396, 483
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 2 cut(s) 265, 328
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 384
BstV2I GAAGAC 1 cut(s) 446
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
Bsu15I ATCGAT 2 cut(s) 33, 141
BsuRI GGCC 1 cut(s) 71
BsuTUI ATCGAT 2 cut(s) 33, 141
BtgI CCRYGG 1 cut(s) 308
BtsCI GGATG 4 cut(s) 110, 160, 396, 483
BtsI GCAGTG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 86
ClaI ATCGAT 2 cut(s) 33, 141
CseI GACGC 2 cut(s) 251, 364
Csp6I GTAC 1 cut(s) 305
CviAII CATG 2 cut(s) 239, 309
CviJI RGCY 5 cut(s) 5, 29, 71, 232, 356
CviKI_1 RGCY 5 cut(s) 5, 29, 71, 232, 356
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 2 cut(s) 359, 446
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 308
Eco31I GGTCTC 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 2 cut(s) 242, 312
FaiI YATR 8 cut(s) 68, 102, 169, 182, 235, 240, 255, 310
FatI CATG 2 cut(s) 238, 308
FauI CCCGC 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 373
FokI GGATG 4 cut(s) 97, 167, 403, 490
Fsp4HI GCNGC 1 cut(s) 373
GluI GCNGC 1 cut(s) 373
HaeIII GGCC 1 cut(s) 71
HgaI GACGC 2 cut(s) 251, 364
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 2 cut(s) 242, 312
HinfI GANTC 2 cut(s) 273, 363
HphI GGTGA 1 cut(s) 3
Hpy188III TCNNGA 4 cut(s) 367, 379, 466, 475
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 3 cut(s) 92, 412, 499
HpyCH4V TGCA 5 cut(s) 289, 422, 428, 454, 509
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 359, 446
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 2 cut(s) 242, 312
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 6 cut(s) 30, 301, 371, 432, 458, 460
Lsp1109I GCAGC 1 cut(s) 384
LweI GCATC 1 cut(s) 199
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 3 cut(s) 155, 214, 451
MflI RGATCY 1 cut(s) 160
MluCI AATT 1 cut(s) 329
MlyI GAGTC 1 cut(s) 267
MnlI CCTC 7 cut(s) 29, 33, 146, 277, 394, 450, 481
MroXI GAANNNNTTC 1 cut(s) 221
MseI TTAA 2 cut(s) 344, 431
Mva1269I GAATGC 1 cut(s) 456
MwoI GCNNNNNNNGC 1 cut(s) 209
NcoI CCATGG 1 cut(s) 308
NdeII GATC 1 cut(s) 160
NlaIII CATG 2 cut(s) 242, 312
NlaIV GGNNCC 2 cut(s) 62, 190
NspV TTCGAA 1 cut(s) 215
PctI GAATGC 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 221
PfeI GAWTC 1 cut(s) 363
PkrI GCNGC 1 cut(s) 374
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
PspN4I GGNNCC 2 cut(s) 62, 190
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SaqAI TTAA 2 cut(s) 344, 431
SatI GCNGC 1 cut(s) 373
Sau3AI GATC 1 cut(s) 160
SchI GAGTC 1 cut(s) 267
SetI ASST 9 cut(s) 49, 66, 138, 194, 234, 288, 320, 350, 437
SfaNI GCATC 1 cut(s) 199
SfuI TTCGAA 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 1 cut(s) 329
SsiI CCGC 2 cut(s) 279, 339
SspI AATATT 1 cut(s) 296
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 3 cut(s) 92, 412, 499
TaqI TCGA 4 cut(s) 33, 75, 141, 215
TasI AATT 1 cut(s) 329
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 2 cut(s) 344, 431
Tru9I TTAA 2 cut(s) 344, 431
TscAI CASTG 1 cut(s) 86
TseI GCWGC 1 cut(s) 372
TspRI CASTG 1 cut(s) 86
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.