Rmu_sc0001244.1_g000011

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001244.1
OG0000188
Physical Location & Seq
Reverse (-)
62570 .. 63961
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001244.1_g000011.1.cds

Sequence Viewer

Length: 1392 bp
atggcaatcaatggtataagtagtagctcaggccatatttcaattgttatagaagatgacatagatacaacagatgtcgaagcattgcaagacaggatgatgaataacctttgcggcgatttacccttgtctaacatatgttgcatcttcagagttccccaagttctccggagacataacccgaaggcatatacacctgatgtcgtctcaattggaccttttcatcgtggccgtgaacaatttcaacgcatggaaattgtgaagcaatggtatttacataaccttctctcacgcatgaatataagtttgaaactcttgattgaagggatttttagggttgagaatcgcgcccgtgagttttattctgaaccacttaatcatcttaaccagaacagcttcgtagaaatgatgatactagatggttgcttcctgctagaactatttaggaagtttagggacaaggagcataggcacatgagtgaccccatattcagcatggattgcatgtttcaatatatatgtcatgaccttttgctactagaaaatcagattccttggtttgtcctaaactgtttatatacccttaccttcgaccccaaggatgatccctccctcagaaaactattgctcaccgtcttcagctcacatcaccaactggcacataattgtcgttcatatctgcgccatctaaataataatgttcatgatgaagatgacgatgatgataaaatcttgcacatacttgatttgataagaacttcgatagtctttccatttaaagatcagtttgatctatcattctatgactcggagacagaattgatgcatcctgcgcttgctctgtcagaggccggagttaaattccgaagggcatcctccactgatactaaaagcataatgaacattgaattcaaggatgggactttggcaattccacaactagcaattggagagttgacggattcattgtccagaaacctcattgcctttgagcaatgctatcctggtcattcgcacaagataacttcttatgccgttttaatggacaacctcatcggttctagcaaggacatggagtttctctgtgagaaaaaaataatagataactggctcagcgctgaggatgcttcaaagttcttcgtcaagctttactatgacactgtgctcaataagttctactatggtggactctgctctaaactcaataaacactatgatcacaaatggaaaacgtggcaagaaaagttcaagcgcacctactgttctgatccatggaaatttatatctttgaccgcagcctttatccttctgcttctcactctgttgcagaccatatatactgtcgcgcaaacttgcaatagtgaaaatcatcatcattatttgtgtttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

463

Amino Acids

54.1

Weight (kDa)

6.05

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 348, 1346
AccIII TCCGGA 1 cut(s) 168
AciI CCGC 2 cut(s) 114, 1293
AclWI GGATC 2 cut(s) 599, 1262
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 3 cut(s) 860, 908, 1277
AcuI CTGAAG 2 cut(s) 133, 622
AfeI AGCGCT 1 cut(s) 1117
AgsI TTSAA 9 cut(s) 42, 245, 310, 323, 512, 908, 913, 1131, 1249
AjnI CCWGG 1 cut(s) 1003
AleI CACNNNNGTG 1 cut(s) 477
AluBI AGCT 4 cut(s) 27, 396, 642, 1147
AluI AGCT 4 cut(s) 27, 396, 642, 1147
Alw21I GWGCWC 1 cut(s) 1167
Alw26I GTCTC 3 cut(s) 166, 211, 806
AlwI GGATC 2 cut(s) 599, 1262
Aor13HI TCCGGA 1 cut(s) 168
Aor51HI AGCGCT 1 cut(s) 1117
AoxI GGCC 3 cut(s) 31, 229, 849
ApeKI GCWGC 1 cut(s) 1295
ApoI RAATTY 3 cut(s) 860, 908, 1277
Asp700I GAANNNNTTC 2 cut(s) 240, 395
AspLEI GCGC 6 cut(s) 350, 684, 835, 1118, 1254, 1348
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 2 cut(s) 622, 641
AvaII GGWCC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 628
Bbv12I GWGCWC 1 cut(s) 1167
BbvCI CCTCAGC 1 cut(s) 1119
BbvI GCAGC 1 cut(s) 1307
BccI CCATC 3 cut(s) 413, 693, 911
BceAI ACGGC 2 cut(s) 216, 1019
BciT130I CCWGG 1 cut(s) 1005
BclI TGATCA 1 cut(s) 1216
BcoDI GTCTC 3 cut(s) 166, 211, 806
BfaI CTAG 5 cut(s) 416, 434, 539, 941, 1062
BfoI RGCGCY 1 cut(s) 1119
BisI GCNGC 2 cut(s) 115, 1296
BlpI GCTNAGC 1 cut(s) 1112
BlsI GCNGC 2 cut(s) 116, 1297
Bme1390I CCNGG 1 cut(s) 1005
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 1005
BmsI GCATC 5 cut(s) 153, 813, 835, 881, 1114
BpiI GAAGAC 1 cut(s) 628
Bpu10I CCTNAGC 2 cut(s) 28, 1119
Bpu1102I GCTNAGC 1 cut(s) 1112
BsaJI CCNNGG 3 cut(s) 554, 597, 1271
BsaWI WCCGGW 1 cut(s) 168
Bse1I ACTGG 2 cut(s) 660, 1112
Bse3DI GCAATG 4 cut(s) 83, 272, 981, 1001
BseAI TCCGGA 1 cut(s) 168
BseBI CCWGG 1 cut(s) 1005
BseDI CCNNGG 3 cut(s) 554, 597, 1271
BseGI GGATG 6 cut(s) 102, 607, 826, 872, 922, 1129
BseMI GCAATG 4 cut(s) 83, 272, 981, 1001
BseMII CTCAG 4 cut(s) 42, 628, 1110, 1126
BseNI ACTGG 2 cut(s) 660, 1112
BseXI GCAGC 1 cut(s) 1307
Bsh1236I CGCG 2 cut(s) 348, 1346
BshFI GGCC 3 cut(s) 33, 231, 851
BsiHKAI GWGCWC 1 cut(s) 1167
BsiSI CCGG 2 cut(s) 169, 852
BslFI GGGAC 2 cut(s) 470, 934
BsmAI GTCTC 3 cut(s) 166, 211, 806
BsmBI CGTCTC 1 cut(s) 211
BsmFI GGGAC 2 cut(s) 470, 934
BsnI GGCC 3 cut(s) 33, 231, 851
Bsp1286I GDGCHC 1 cut(s) 1167
Bsp13I TCCGGA 1 cut(s) 168
Bsp143I GATC 5 cut(s) 604, 781, 790, 1216, 1267
Bsp1720I GCTNAGC 1 cut(s) 1112
Bsp19I CCATGG 1 cut(s) 1271
BspACI CCGC 2 cut(s) 114, 1293
BspANI GGCC 3 cut(s) 33, 231, 851
BspCNI CTCAG 4 cut(s) 41, 627, 1111, 1125
BspEI TCCGGA 1 cut(s) 168
BspFNI CGCG 2 cut(s) 348, 1346
BspHI TCATGA 2 cut(s) 523, 703
BspPI GGATC 2 cut(s) 599, 1262
BsrDI GCAATG 4 cut(s) 83, 272, 981, 1001
BsrI ACTGG 2 cut(s) 660, 1112
BssECI CCNNGG 3 cut(s) 554, 597, 1271
BssMI GATC 5 cut(s) 604, 781, 790, 1216, 1267
BssT1I CCWWGG 3 cut(s) 554, 597, 1271
Bst2UI CCWGG 1 cut(s) 1005
Bst4CI ACNGT 5 cut(s) 572, 634, 1162, 1262, 1342
BstAPI GCANNNNNTGC 1 cut(s) 501
BstC8I GCNNGC 1 cut(s) 837
BstDEI CTNAG 4 cut(s) 28, 614, 1112, 1119
BstDSI CCRYGG 1 cut(s) 1271
BstF5I GGATG 6 cut(s) 102, 607, 826, 872, 922, 1129
BstFNI CGCG 2 cut(s) 348, 1346
BstH2I RGCGCY 1 cut(s) 1119
BstHHI GCGC 6 cut(s) 350, 684, 835, 1118, 1254, 1348
BstKTI GATC 5 cut(s) 607, 784, 793, 1219, 1270
BstMAI GTCTC 3 cut(s) 166, 211, 806
BstMBI GATC 5 cut(s) 604, 781, 790, 1216, 1267
BstMWI GCNNNNNNNGC 3 cut(s) 501, 832, 1124
BstNI CCWGG 1 cut(s) 1005
BstNSI RCATGY 1 cut(s) 508
BstSCI CCNGG 1 cut(s) 1003
BstUI CGCG 2 cut(s) 348, 1346
BstV1I GCAGC 1 cut(s) 1307
BstV2I GAAGAC 1 cut(s) 628
BsuRI GGCC 3 cut(s) 33, 231, 851
BtgI CCRYGG 1 cut(s) 1271
BtsCI GGATG 6 cut(s) 102, 607, 826, 872, 922, 1129
BtsIMutI CAGTG 2 cut(s) 879, 1158
Cac8I GCNNGC 1 cut(s) 837
CciI TCATGA 2 cut(s) 523, 703
CfoI GCGC 6 cut(s) 350, 684, 835, 1118, 1254, 1348
Cfr13I GGNCC 1 cut(s) 215
CviAII CATG 9 cut(s) 250, 295, 475, 496, 505, 524, 704, 1072, 1272
CviJI RGCY 9 cut(s) 27, 33, 231, 396, 642, 851, 1111, 1147, 1298
CviKI_1 RGCY 9 cut(s) 27, 33, 231, 396, 642, 851, 1111, 1147, 1298
DdeI CTNAG 4 cut(s) 28, 614, 1112, 1119
DpnI GATC 5 cut(s) 606, 783, 792, 1218, 1269
DpnII GATC 5 cut(s) 604, 781, 790, 1216, 1267
DraI TTTAAA 1 cut(s) 778
EaeI YGGCCR 1 cut(s) 229
Eco130I CCWWGG 3 cut(s) 554, 597, 1271
Eco47I GGWCC 1 cut(s) 215
Eco47III AGCGCT 1 cut(s) 1117
Eco57I CTGAAG 2 cut(s) 133, 622
EcoRI GAATTC 1 cut(s) 908
EcoRII CCWGG 1 cut(s) 1003
EcoT14I CCWWGG 3 cut(s) 554, 597, 1271
EcoT22I ATGCAT 1 cut(s) 828
ErhI CCWWGG 3 cut(s) 554, 597, 1271
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 9 cut(s) 253, 298, 478, 499, 508, 527, 707, 1075, 1275
FaqI GGGAC 2 cut(s) 470, 934
FatI CATG 9 cut(s) 249, 294, 474, 495, 504, 523, 703, 1071, 1271
FauNDI CATATG 1 cut(s) 137
FbaI TGATCA 1 cut(s) 1216
Fnu4HI GCNGC 2 cut(s) 115, 1296
FokI GGATG 6 cut(s) 109, 614, 813, 859, 929, 1136
Fsp4HI GCNGC 2 cut(s) 115, 1296
FspBI CTAG 5 cut(s) 416, 434, 539, 941, 1062
GlaI GCGC 6 cut(s) 349, 683, 834, 1117, 1253, 1347
GluI GCNGC 2 cut(s) 115, 1296
HaeII RGCGCY 1 cut(s) 1119
HaeIII GGCC 3 cut(s) 33, 231, 851
HapII CCGG 2 cut(s) 169, 852
HhaI GCGC 6 cut(s) 350, 684, 835, 1118, 1254, 1348
Hin1II CATG 9 cut(s) 253, 298, 478, 499, 508, 527, 707, 1075, 1275
Hin6I GCGC 6 cut(s) 348, 682, 833, 1116, 1252, 1346
HinP1I GCGC 6 cut(s) 348, 682, 833, 1116, 1252, 1346
HincII GTYRAC 1 cut(s) 957
HindII GTYRAC 1 cut(s) 957
HindIII AAGCTT 1 cut(s) 1145
HinfI GANTC 5 cut(s) 343, 550, 806, 962, 1188
HpaII CCGG 2 cut(s) 169, 852
HphI GGTGA 2 cut(s) 622, 641
Hpy166II GTNNAC 3 cut(s) 236, 957, 1187
Hpy188I TCNGA 8 cut(s) 152, 367, 549, 617, 811, 847, 866, 1267
Hpy188III TCNNGA 5 cut(s) 169, 316, 524, 704, 972
Hpy8I GTNNAC 3 cut(s) 236, 957, 1187
HpyAV CCTTC 6 cut(s) 178, 293, 317, 598, 861, 1316
HpyCH4III ACNGT 5 cut(s) 572, 634, 1162, 1262, 1342
HpyCH4IV ACGT 1 cut(s) 1232
HpyCH4V TGCA 7 cut(s) 88, 144, 504, 736, 826, 1327, 1356
HpyF10VI GCNNNNNNNGC 3 cut(s) 501, 832, 1124
HpyF3I CTNAG 4 cut(s) 28, 614, 1112, 1119
HpySE526I ACGT 1 cut(s) 1232
Hsp92II CATG 9 cut(s) 253, 298, 478, 499, 508, 527, 707, 1075, 1275
HspAI GCGC 6 cut(s) 348, 682, 833, 1116, 1252, 1346
Kpn2I TCCGGA 1 cut(s) 168
Ksp22I TGATCA 1 cut(s) 1216
Kzo9I GATC 5 cut(s) 604, 781, 790, 1216, 1267
LmnI GCTCC 1 cut(s) 463
Lsp1109I GCAGC 1 cut(s) 1307
LweI GCATC 5 cut(s) 153, 813, 835, 881, 1114
MaeI CTAG 5 cut(s) 416, 434, 539, 941, 1062
MaeII ACGT 1 cut(s) 1232
MaeIII GTNAC 1 cut(s) 479
MalI GATC 5 cut(s) 606, 783, 792, 1218, 1269
MboI GATC 5 cut(s) 604, 781, 790, 1216, 1267
MboII GAAGA 5 cut(s) 65, 139, 628, 722, 1129
MfeI CAATTG 3 cut(s) 42, 210, 945
MhlI GDGCHC 1 cut(s) 1167
MlyI GAGTC 2 cut(s) 800, 1182
MnlI CCTC 7 cut(s) 619, 623, 841, 886, 989, 1061, 1114
Mph1103I ATGCAT 1 cut(s) 828
MroI TCCGGA 1 cut(s) 168
MroXI GAANNNNTTC 2 cut(s) 240, 395
MseI TTAA 5 cut(s) 375, 384, 777, 858, 1040
MslI CAYNNNNRTG 1 cut(s) 477
MspI CCGG 2 cut(s) 169, 852
MspR9I CCNGG 1 cut(s) 1005
MunI CAATTG 3 cut(s) 42, 210, 945
MvaI CCWGG 1 cut(s) 1005
MvnI CGCG 2 cut(s) 348, 1346
MwoI GCNNNNNNNGC 3 cut(s) 501, 832, 1124
NcoI CCATGG 1 cut(s) 1271
NdeI CATATG 1 cut(s) 137
NdeII GATC 5 cut(s) 604, 781, 790, 1216, 1267
NlaIII CATG 9 cut(s) 253, 298, 478, 499, 508, 527, 707, 1075, 1275
NmuCI GTSAC 1 cut(s) 479
NsiI ATGCAT 1 cut(s) 828
NspI RCATGY 1 cut(s) 508
OliI CACNNNNGTG 1 cut(s) 477
PagI TCATGA 2 cut(s) 523, 703
PdmI GAANNNNTTC 2 cut(s) 240, 395
PfeI GAWTC 3 cut(s) 343, 550, 962
PkrI GCNGC 2 cut(s) 116, 1297
PleI GAGTC 2 cut(s) 800, 1182
PpsI GAGTC 2 cut(s) 800, 1182
Psp6I CCWGG 1 cut(s) 1003
PspGI CCWGG 1 cut(s) 1003
PspPI GGNCC 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 477
SaqAI TTAA 5 cut(s) 375, 384, 777, 858, 1040
SatI GCNGC 2 cut(s) 115, 1296
Sau3AI GATC 5 cut(s) 604, 781, 790, 1216, 1267
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 2 cut(s) 800, 1182
ScrFI CCNGG 1 cut(s) 1005
SduI GDGCHC 1 cut(s) 1167
SfaNI GCATC 5 cut(s) 153, 813, 835, 881, 1114
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 477
SsiI CCGC 2 cut(s) 114, 1293
SspMI CTAG 5 cut(s) 416, 434, 539, 941, 1062
StyD4I CCNGG 1 cut(s) 1003
StyI CCWWGG 3 cut(s) 554, 597, 1271
TaaI ACNGT 5 cut(s) 572, 634, 1162, 1262, 1342
TaiI ACGT 1 cut(s) 1235
TaqI TCGA 3 cut(s) 78, 591, 761
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 3 cut(s) 343, 550, 962
Tru1I TTAA 5 cut(s) 375, 384, 777, 858, 1040
Tru9I TTAA 5 cut(s) 375, 384, 777, 858, 1040
TscAI CASTG 2 cut(s) 886, 1165
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 1 cut(s) 1295
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 8 cut(s) 116, 212, 311, 663, 692, 723, 914, 954
TspGWI ACGGA 1 cut(s) 974
TspRI CASTG 2 cut(s) 886, 1165
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 3 cut(s) 860, 908, 1277
XceI RCATGY 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XmnI GAANNNNTTC 2 cut(s) 240, 395
XspI CTAG 5 cut(s) 416, 434, 539, 941, 1062
Zsp2I ATGCAT 1 cut(s) 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.