RchiOBHm_Chr5g0058261

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000188
Physical Location & Seq
Forward (+)
62471176 .. 62471442
267 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33496

Sequence Viewer

Length: 267 bp
ATGATAGTCGACGGCTGCTTTCTAATCCAACTGTTTCGAAAGTGTACTGATGTGCAACCTAGGGGTAGTGATGACCCGTTGTTCAACATGGATTGCATGTTCCATTTCTTATGCCATGACCTTTTGCTGCTTGAAAACCAACTACCCTGGTTTGTTCTCGAAACTTTATATAGCCTTGTCCTTGCCTATTCCGGAGGTCCTGGCCCTTCCCTCTCTATCCTCATACTTGACGCCTTCAAGCATTTACCCTCACTGAAGCATTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

88

Amino Acids

10.01

Weight (kDa)

5.27

Isoelectric Point (pI)

28.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 81 1.1e-19 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 9
AccIII TCCGGA 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 1 cut(s) 46
AgsI TTSAA 3 cut(s) 85, 134, 238
AjnI CCWGG 2 cut(s) 146, 199
AloI GAACNNNNNNTCC 2 cut(s) 83, 115
Aor13HI TCCGGA 1 cut(s) 191
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 2 cut(s) 15, 127
AspA2I CCTAGG 1 cut(s) 59
AspS9I GGNCC 2 cut(s) 197, 203
AsuII TTCGAA 1 cut(s) 37
AvaII GGWCC 1 cut(s) 197
AvrII CCTAGG 1 cut(s) 59
BbvI GCAGC 2 cut(s) 2, 114
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 2 cut(s) 148, 201
BfaI CTAG 1 cut(s) 60
BisI GCNGC 2 cut(s) 16, 128
BlnI CCTAGG 1 cut(s) 59
BlsI GCNGC 2 cut(s) 17, 129
Bme1390I CCNGG 2 cut(s) 148, 201
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 2 cut(s) 197, 203
BmrFI CCNGG 2 cut(s) 148, 201
Bpu14I TTCGAA 1 cut(s) 37
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 59, 146
BsaWI WCCGGW 1 cut(s) 191
BseAI TCCGGA 1 cut(s) 191
BseBI CCWGG 2 cut(s) 148, 201
BseDI CCNNGG 2 cut(s) 59, 146
BseXI GCAGC 2 cut(s) 2, 114
BshFI GGCC 1 cut(s) 204
BsiSI CCGG 1 cut(s) 192
BsnI GGCC 1 cut(s) 204
Bsp119I TTCGAA 1 cut(s) 37
Bsp13I TCCGGA 1 cut(s) 191
BspANI GGCC 1 cut(s) 204
BspEI TCCGGA 1 cut(s) 191
BspT104I TTCGAA 1 cut(s) 37
BssECI CCNNGG 2 cut(s) 59, 146
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 59
Bst2UI CCWGG 2 cut(s) 148, 201
Bst4CI ACNGT 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 231
BstBI TTCGAA 1 cut(s) 37
BstNI CCWGG 2 cut(s) 148, 201
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 2 cut(s) 146, 199
BstV1I GCAGC 2 cut(s) 2, 114
BsuRI GGCC 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 251
Cfr13I GGNCC 2 cut(s) 197, 203
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 45
CviAII CATG 3 cut(s) 88, 97, 116
CviJI RGCY 3 cut(s) 15, 174, 204
CviKI_1 RGCY 3 cut(s) 15, 174, 204
CviQI GTAC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 146, 199
EcoT14I CCWWGG 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
FaeI CATG 3 cut(s) 91, 100, 119
FaiI YATR 7 cut(s) 89, 98, 112, 117, 169, 171, 224
FatI CATG 3 cut(s) 87, 96, 115
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 2 cut(s) 16, 128
Fsp4HI GCNGC 2 cut(s) 16, 128
FspBI CTAG 1 cut(s) 60
GluI GCNGC 2 cut(s) 16, 128
HaeIII GGCC 1 cut(s) 204
HapII CCGG 1 cut(s) 192
HgaI GACGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 3 cut(s) 91, 100, 119
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HpaII CCGG 1 cut(s) 192
Hpy166II GTNNAC 2 cut(s) 10, 45
Hpy188III TCNNGA 2 cut(s) 158, 192
Hpy8I GTNNAC 2 cut(s) 10, 45
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 216, 244
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4V TGCA 2 cut(s) 55, 96
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 3 cut(s) 91, 100, 119
Kpn2I TCCGGA 1 cut(s) 191
LpnPI CCDG 5 cut(s) 133, 160, 186, 205, 213
Lsp1109I GCAGC 2 cut(s) 2, 114
MaeI CTAG 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 4 cut(s) 188, 221, 230, 259
MroI TCCGGA 1 cut(s) 191
MseI TTAA 1 cut(s) 265
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 148, 201
MvaI CCWGG 2 cut(s) 148, 201
NlaIII CATG 3 cut(s) 91, 100, 119
NspI RCATGY 1 cut(s) 100
NspV TTCGAA 1 cut(s) 37
PkrI GCNGC 2 cut(s) 17, 129
PpuMI RGGWCCY 1 cut(s) 197
Psp5II RGGWCCY 1 cut(s) 197
Psp6I CCWGG 2 cut(s) 146, 199
PspGI CCWGG 2 cut(s) 146, 199
PspPI GGNCC 2 cut(s) 197, 203
PspPPI RGGWCCY 1 cut(s) 197
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
SalI GTCGAC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 265
SatI GCNGC 2 cut(s) 16, 128
Sau96I GGNCC 2 cut(s) 197, 203
ScrFI CCNGG 2 cut(s) 148, 201
SetI ASST 3 cut(s) 61, 123, 199
SfuI TTCGAA 1 cut(s) 37
SinI GGWCC 1 cut(s) 197
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 2 cut(s) 146, 199
StyI CCWWGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 33
TaqI TCGA 3 cut(s) 9, 37, 159
TatI WGTACW 1 cut(s) 44
Tru1I TTAA 1 cut(s) 265
Tru9I TTAA 1 cut(s) 265
TscAI CASTG 1 cut(s) 258
TseI GCWGC 2 cut(s) 15, 127
TspRI CASTG 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 197
XceI RCATGY 1 cut(s) 100
XmaJI CCTAGG 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 9
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.