Rmu_sc0010190.1_g000008

UPF0481 protein At3g47200-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010190.1
Physical Location & Seq
Forward (+)
21526 .. 21936
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010190.1_g000008.1.cds

Sequence Viewer

Length: 411 bp
atggtttttccattccatgcatttggatccacctacagcttagacacaaagctgcctcatgctacagttctctcgaaggcaggtgttgacttcagaactggatccggtcatagcataacgaacatagaatttaaagatgggattcttacaatgcccaatttgagtattgtagagttgacagaaccattgttcagaaatctcattgcctttgaacaatgctatcatggccgctcgactaagacaacttctaacgcccttttggtggataacctcatcggttctagcaaggacattgattttctctgtgagaaaaaaatcaagatcatcaataactggctgagttccgaagatgctgcccagtttttcaacaagctttacagacacatttctgaaacagttctactatggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.34

Weight (kDa)

6.5

Isoelectric Point (pI)

35.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 71
AccBSI CCGCTC 1 cut(s) 231
AciI CCGC 1 cut(s) 229
AclWI GGATC 4 cut(s) 21, 34, 96, 109
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 2 cut(s) 212, 367
AluBI AGCT 3 cut(s) 39, 52, 373
AluI AGCT 3 cut(s) 39, 52, 373
AlwI GGATC 4 cut(s) 21, 34, 96, 109
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 2 cut(s) 52, 353
ApoI RAATTY 1 cut(s) 128
Asp700I GAANNNNTTC 1 cut(s) 396
BamHI GGATCC 2 cut(s) 26, 101
BbvI GCAGC 2 cut(s) 39, 340
BccI CCATC 1 cut(s) 131
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 2 cut(s) 34, 63
BfuAI ACCTGC 1 cut(s) 71
BisI GCNGC 3 cut(s) 53, 229, 354
BlsI GCNGC 3 cut(s) 54, 230, 355
BmiI GGNNCC 2 cut(s) 28, 103
BmrI ACTGGG 1 cut(s) 352
BmsI GCATC 1 cut(s) 340
BmuI ACTGGG 1 cut(s) 352
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse1I ACTGG 3 cut(s) 103, 338, 358
Bse3DI GCAATG 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 3 cut(s) 103, 338, 358
BseXI GCAGC 2 cut(s) 39, 340
BshFI GGCC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 262
BsnI GGCC 1 cut(s) 228
Bsp143I GATC 3 cut(s) 26, 101, 321
BspACI CCGC 1 cut(s) 229
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 330
BspLI GGNNCC 2 cut(s) 28, 103
BspMI ACCTGC 1 cut(s) 71
BspPI GGATC 4 cut(s) 21, 34, 96, 109
BsrBI CCGCTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 201
BsrI ACTGG 3 cut(s) 103, 338, 358
BssMI GATC 3 cut(s) 26, 101, 321
Bst4CI ACNGT 2 cut(s) 67, 397
BstDEI CTNAG 3 cut(s) 40, 237, 338
BstKTI GATC 3 cut(s) 29, 104, 324
BstMBI GATC 3 cut(s) 26, 101, 321
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstSFI CTRYAG 2 cut(s) 34, 63
BstV1I GCAGC 2 cut(s) 39, 340
BstX2I RGATCY 2 cut(s) 26, 101
BstXI CCANNNNNNTGG 1 cut(s) 23
BstYI RGATCY 2 cut(s) 26, 101
BsuRI GGCC 1 cut(s) 228
BveI ACCTGC 1 cut(s) 71
CviAII CATG 3 cut(s) 17, 59, 224
CviJI RGCY 5 cut(s) 39, 52, 228, 337, 373
CviKI_1 RGCY 5 cut(s) 39, 52, 228, 337, 373
DdeI CTNAG 3 cut(s) 40, 237, 338
DpnI GATC 3 cut(s) 28, 103, 323
DpnII GATC 3 cut(s) 26, 101, 321
DraI TTTAAA 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 76
EcoT22I ATGCAT 1 cut(s) 22
FaeI CATG 3 cut(s) 20, 62, 227
FaiI YATR 7 cut(s) 18, 60, 111, 116, 125, 225, 406
FatI CATG 3 cut(s) 16, 58, 223
Fnu4HI GCNGC 3 cut(s) 53, 229, 354
Fsp4HI GCNGC 3 cut(s) 53, 229, 354
FspBI CTAG 1 cut(s) 282
GluI GCNGC 3 cut(s) 53, 229, 354
HaeIII GGCC 1 cut(s) 228
HapII CCGG 1 cut(s) 105
Hin1II CATG 3 cut(s) 20, 62, 227
HincII GTYRAC 2 cut(s) 88, 177
HindII GTYRAC 2 cut(s) 88, 177
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 105
Hpy166II GTNNAC 2 cut(s) 88, 177
Hpy188I TCNGA 4 cut(s) 95, 194, 346, 391
Hpy188III TCNNGA 2 cut(s) 73, 319
Hpy8I GTNNAC 2 cut(s) 88, 177
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 2 cut(s) 67, 397
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpyF3I CTNAG 3 cut(s) 40, 237, 338
Hsp92II CATG 3 cut(s) 20, 62, 227
Kzo9I GATC 3 cut(s) 26, 101, 321
LpnPI CCDG 5 cut(s) 66, 84, 118, 319, 371
Lsp1109I GCAGC 2 cut(s) 39, 340
LweI GCATC 1 cut(s) 340
MaeI CTAG 1 cut(s) 282
MalI GATC 3 cut(s) 28, 103, 323
MbiI CCGCTC 1 cut(s) 231
MboI GATC 3 cut(s) 26, 101, 321
MboII GAAGA 1 cut(s) 359
MflI RGATCY 2 cut(s) 26, 101
MluCI AATT 2 cut(s) 128, 157
MnlI CCTC 2 cut(s) 66, 281
Mph1103I ATGCAT 1 cut(s) 22
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 1 cut(s) 132
MspI CCGG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 225
NdeII GATC 3 cut(s) 26, 101, 321
NlaIII CATG 3 cut(s) 20, 62, 227
NlaIV GGNNCC 2 cut(s) 28, 103
NsiI ATGCAT 1 cut(s) 22
PaqCI CACCTGC 1 cut(s) 71
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 3 cut(s) 54, 230, 355
PspN4I GGNNCC 2 cut(s) 28, 103
PsuI RGATCY 2 cut(s) 26, 101
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 3 cut(s) 53, 229, 354
Sau3AI GATC 3 cut(s) 26, 101, 321
SetI ASST 6 cut(s) 35, 41, 54, 85, 273, 375
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 2 cut(s) 34, 63
Sse9I AATT 2 cut(s) 128, 157
SsiI CCGC 1 cut(s) 229
SspMI CTAG 1 cut(s) 282
TaaI ACNGT 2 cut(s) 67, 397
TaqI TCGA 2 cut(s) 74, 233
TasI AATT 2 cut(s) 128, 157
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseI GCWGC 2 cut(s) 52, 353
XapI RAATTY 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 1 cut(s) 282
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.