Rmu_co8229993.1_g000001

UPF0481 protein At3g47200-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8229993.1
Physical Location & Seq
Forward (+)
31 .. 516
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8229993.1_g000001.1.cds

Sequence Viewer

Length: 486 bp
atggaaggcatgatgaacatagatttcaaagacggcgtgtttacaattccacaactgccaattgcagagatgacagagccactgttgaggaacataattgccctcgagcaatgttgtcatggacgatcacataaaataacttcctatgttattttgatgcatagcctcattgcttccagcaaggatatagattttctttgtgagaaagaaatattcctcaactggttcagctctgaaaatgcttacaagatcttcaacaagctttacgatgatacgttcctcaagaacttctactatggggaactatgtgctgaagtgaacaactattacaacgtttcgtggaacaggtggctagaaaaattgaaacgtgatcacttatctaacccatggaagattacttctttggttgcagcctttattcttctggctctcaccttattgcagaccacatataccattcagcaatactattctcctcgtcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

19.01

Weight (kDa)

6.07

Isoelectric Point (pI)

50.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 333
AgsI TTSAA 3 cut(s) 28, 256, 364
AluBI AGCT 2 cut(s) 231, 262
AluI AGCT 2 cut(s) 231, 262
Ama87I CYCGRG 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 410
AsuHPI GGTGA 1 cut(s) 424
AvaI CYCGRG 1 cut(s) 104
BbvI GCAGC 1 cut(s) 422
BceAI ACGGC 1 cut(s) 49
BclI TGATCA 1 cut(s) 370
BfaI CTAG 1 cut(s) 353
BglII AGATCT 1 cut(s) 249
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
BmeT110I CYCGRG 1 cut(s) 104
BmsI GCATC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 386
Bse1I ACTGG 1 cut(s) 227
Bse3DI GCAATG 2 cut(s) 116, 168
BseDI CCNNGG 1 cut(s) 386
BseMI GCAATG 2 cut(s) 116, 168
BseNI ACTGG 1 cut(s) 227
BseRI GAGGAG 1 cut(s) 465
BseXI GCAGC 1 cut(s) 422
BsiHKCI CYCGRG 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 104
Bsp143I GATC 3 cut(s) 125, 249, 370
Bsp19I CCATGG 1 cut(s) 386
BsrDI GCAATG 2 cut(s) 116, 168
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 386
BssMI GATC 3 cut(s) 125, 249, 370
BssT1I CCWWGG 1 cut(s) 386
Bst4CI ACNGT 1 cut(s) 84
BstDSI CCRYGG 1 cut(s) 386
BstKTI GATC 3 cut(s) 128, 252, 373
BstMBI GATC 3 cut(s) 125, 249, 370
BstV1I GCAGC 1 cut(s) 422
BstX2I RGATCY 1 cut(s) 249
BstYI RGATCY 1 cut(s) 249
BtgI CCRYGG 1 cut(s) 386
BtsIMutI CAGTG 1 cut(s) 80
CviAII CATG 3 cut(s) 10, 119, 387
CviJI RGCY 7 cut(s) 79, 165, 231, 262, 352, 413, 428
CviKI_1 RGCY 7 cut(s) 79, 165, 231, 262, 352, 413, 428
DpnI GATC 3 cut(s) 127, 251, 372
DpnII GATC 3 cut(s) 125, 249, 370
Eco130I CCWWGG 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 386
EcoT22I ATGCAT 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 386
FaeI CATG 3 cut(s) 13, 122, 390
FatI CATG 3 cut(s) 9, 118, 386
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 1 cut(s) 411
Fsp4HI GCNGC 1 cut(s) 411
FspBI CTAG 1 cut(s) 353
GluI GCNGC 1 cut(s) 411
Hin1II CATG 3 cut(s) 13, 122, 390
HindIII AAGCTT 1 cut(s) 260
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 2 cut(s) 42, 319
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 2 cut(s) 42, 319
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4IV ACGT 3 cut(s) 275, 333, 367
HpyCH4V TGCA 4 cut(s) 65, 160, 410, 442
HpySE526I ACGT 3 cut(s) 275, 333, 367
Hsp92II CATG 3 cut(s) 13, 122, 390
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 3 cut(s) 125, 249, 370
LpnPI CCDG 4 cut(s) 190, 208, 331, 410
Lsp1109I GCAGC 1 cut(s) 422
LweI GCATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 353
MaeII ACGT 3 cut(s) 275, 333, 367
MalI GATC 3 cut(s) 127, 251, 372
MboI GATC 3 cut(s) 125, 249, 370
MboII GAAGA 3 cut(s) 244, 403, 413
MfeI CAATTG 1 cut(s) 60
MflI RGATCY 1 cut(s) 249
MluCI AATT 4 cut(s) 45, 60, 96, 359
MnlI CCTC 6 cut(s) 81, 113, 176, 227, 290, 486
Mph1103I ATGCAT 1 cut(s) 162
MunI CAATTG 1 cut(s) 60
NcoI CCATGG 1 cut(s) 386
NdeII GATC 3 cut(s) 125, 249, 370
NlaIII CATG 3 cut(s) 13, 122, 390
NsiI ATGCAT 1 cut(s) 162
PaeR7I CTCGAG 1 cut(s) 104
PkrI GCNGC 1 cut(s) 412
Psp1406I AACGTT 1 cut(s) 333
PspXI VCTCGAGB 1 cut(s) 104
PsrI GAACNNNNNNTAC 2 cut(s) 311, 343
PsuI RGATCY 1 cut(s) 249
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 3 cut(s) 125, 249, 370
SetI ASST 7 cut(s) 233, 264, 278, 336, 350, 370, 437
SfaNI GCATC 1 cut(s) 147
Sfr274I CTCGAG 1 cut(s) 104
SlaI CTCGAG 1 cut(s) 104
SmlI CTYRAG 2 cut(s) 104, 281
SmoI CTYRAG 2 cut(s) 104, 281
Sse9I AATT 4 cut(s) 45, 60, 96, 359
SspI AATATT 1 cut(s) 213
SspMI CTAG 1 cut(s) 353
StyI CCWWGG 1 cut(s) 386
TaaI ACNGT 1 cut(s) 84
TaiI ACGT 3 cut(s) 278, 336, 370
TaqI TCGA 1 cut(s) 105
TasI AATT 4 cut(s) 45, 60, 96, 359
TscAI CASTG 1 cut(s) 87
TseI GCWGC 1 cut(s) 410
TspDTI ATGAA 1 cut(s) 29
TspRI CASTG 1 cut(s) 87
XhoI CTCGAG 1 cut(s) 104
XspI CTAG 1 cut(s) 353
Zsp2I ATGCAT 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.