RchiOBHm_Chr2g0175191

calcium-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000188
Physical Location & Seq
Forward (+)
87513557 .. 87513865
309 bp
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UTR
Exon/CDS
Intron
PRQ54228

Sequence Viewer

Length: 309 bp
ATGAGAGGACATGTCCTTTTGTCCAGGAACCTTATGGCCTTCGAGCAGTGTTATCACAGTTGCGCGCACATGATCACATCCTACGCGGTTTTGATGGATAACCTCATCGATACGAACAAGGATGTGGATCTTCTATGTGAGAAAGATATATTAGCCAATTGGTTGAGTGCTGATGATGCTTCTAAGTTCTTCAACGCTCTATATACTGACACCACAGTTATTGACTTTGCCTACCAGGATCTCTGCGGAGAAGTGCATAAATATCACAAAAGCTCCATGGAACAAGTGGAGAGAGAAATTGAAACGTGA

Protein Analysis

102

Amino Acids

11.79

Weight (kDa)

4.72

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 7 - 94 3.3e-25 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 65, 86
AciI CCGC 2 cut(s) 86, 246
AclWI GGATC 2 cut(s) 135, 246
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 2 cut(s) 193, 302
AjnI CCWGG 2 cut(s) 23, 234
AluBI AGCT 1 cut(s) 273
AluI AGCT 1 cut(s) 273
AlwI GGATC 2 cut(s) 135, 246
AoxI GGCC 1 cut(s) 36
AspLEI GCGC 2 cut(s) 65, 67
BccI CCATC 1 cut(s) 88
BciT130I CCWGG 2 cut(s) 25, 236
BclI TGATCA 1 cut(s) 72
Bme1390I CCNGG 2 cut(s) 25, 236
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 2 cut(s) 25, 236
BmsI GCATC 1 cut(s) 166
Bsa29I ATCGAT 1 cut(s) 108
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 2 cut(s) 25, 236
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 2 cut(s) 77, 127
BseJI GATNNNNATC 1 cut(s) 126
BsePI GCGCGC 1 cut(s) 63
Bsh1236I CGCG 2 cut(s) 65, 86
BshFI GGCC 1 cut(s) 38
BshVI ATCGAT 1 cut(s) 108
BsnI GGCC 1 cut(s) 38
Bsp143I GATC 3 cut(s) 72, 127, 238
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 2 cut(s) 86, 246
BspANI GGCC 1 cut(s) 38
BspDI ATCGAT 1 cut(s) 108
BspFNI CGCG 2 cut(s) 65, 86
BspLI GGNNCC 1 cut(s) 29
BspPI GGATC 2 cut(s) 135, 246
BssECI CCNNGG 1 cut(s) 276
BssHII GCGCGC 1 cut(s) 63
BssMI GATC 3 cut(s) 72, 127, 238
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 25, 236
Bst4CI ACNGT 2 cut(s) 59, 217
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 2 cut(s) 77, 127
BstFNI CGCG 2 cut(s) 65, 86
BstHHI GCGC 2 cut(s) 65, 67
BstKTI GATC 3 cut(s) 75, 130, 241
BstMBI GATC 3 cut(s) 72, 127, 238
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 2 cut(s) 25, 236
BstNSI RCATGY 1 cut(s) 14
BstSCI CCNGG 2 cut(s) 23, 234
BstUI CGCG 2 cut(s) 65, 86
BstX2I RGATCY 2 cut(s) 127, 238
BstYI RGATCY 2 cut(s) 127, 238
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 1 cut(s) 38
BsuTUI ATCGAT 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 2 cut(s) 77, 127
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 65
CfoI GCGC 2 cut(s) 65, 67
ClaI ATCGAT 1 cut(s) 108
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviAII CATG 3 cut(s) 11, 70, 277
CviJI RGCY 3 cut(s) 38, 155, 273
CviKI_1 RGCY 3 cut(s) 38, 155, 273
DdeI CTNAG 1 cut(s) 183
DpnI GATC 3 cut(s) 74, 129, 240
DpnII GATC 3 cut(s) 72, 127, 238
Eco130I CCWWGG 1 cut(s) 276
EcoRII CCWGG 2 cut(s) 23, 234
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 3 cut(s) 14, 73, 280
FaiI YATR 9 cut(s) 12, 35, 71, 136, 149, 202, 204, 258, 278
FatI CATG 3 cut(s) 10, 69, 276
FbaI TGATCA 1 cut(s) 72
FokI GGATG 2 cut(s) 64, 134
GlaI GCGC 2 cut(s) 64, 66
HaeIII GGCC 1 cut(s) 38
HhaI GCGC 2 cut(s) 65, 67
Hin1II CATG 3 cut(s) 14, 73, 280
Hin6I GCGC 2 cut(s) 63, 65
HinP1I GCGC 2 cut(s) 63, 65
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 2 cut(s) 59, 217
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 3 cut(s) 14, 73, 280
HspAI GCGC 2 cut(s) 63, 65
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 3 cut(s) 72, 127, 238
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 4 cut(s) 10, 37, 221, 248
LweI GCATC 1 cut(s) 166
MaeII ACGT 1 cut(s) 305
MalI GATC 3 cut(s) 74, 129, 240
MboI GATC 3 cut(s) 72, 127, 238
MboII GAAGA 2 cut(s) 122, 181
MfeI CAATTG 1 cut(s) 157
MflI RGATCY 2 cut(s) 127, 238
MluCI AATT 2 cut(s) 157, 297
MnlI CCTC 1 cut(s) 113
MspR9I CCNGG 2 cut(s) 25, 236
MunI CAATTG 1 cut(s) 157
MvaI CCWGG 2 cut(s) 25, 236
MvnI CGCG 2 cut(s) 65, 86
MwoI GCNNNNNNNGC 1 cut(s) 176
NcoI CCATGG 1 cut(s) 276
NdeII GATC 3 cut(s) 72, 127, 238
NlaIII CATG 3 cut(s) 14, 73, 280
NlaIV GGNNCC 1 cut(s) 29
NspI RCATGY 1 cut(s) 14
PauI GCGCGC 1 cut(s) 63
PciI ACATGT 1 cut(s) 10
PfoI TCCNGGA 1 cut(s) 23
PscI ACATGT 1 cut(s) 10
Psp6I CCWGG 2 cut(s) 23, 234
PspGI CCWGG 2 cut(s) 23, 234
PspN4I GGNNCC 1 cut(s) 29
PsuI RGATCY 2 cut(s) 127, 238
PteI GCGCGC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 72, 127, 238
ScrFI CCNGG 2 cut(s) 25, 236
SetI ASST 4 cut(s) 33, 105, 275, 308
SfaNI GCATC 1 cut(s) 166
Sse9I AATT 2 cut(s) 157, 297
SsiI CCGC 2 cut(s) 86, 246
StyD4I CCNGG 2 cut(s) 23, 234
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 2 cut(s) 59, 217
TaiI ACGT 1 cut(s) 308
TaqI TCGA 2 cut(s) 42, 108
TasI AATT 2 cut(s) 157, 297
TscAI CASTG 1 cut(s) 53
TspRI CASTG 1 cut(s) 53
XceI RCATGY 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 2 cut(s) 31, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.