RLG00000022309

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000188
Physical Location & Seq
Forward (+)
82471029 .. 82473384
2356 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022309

Sequence Viewer

Length: 1791 bp
ATGGCAGGTAGCAGTGATATAGAAAAGGGTGAAGTGGCTGAAAGCGTTCCAGTTCATCTAGAACGTAAAGGTCATTCTCAAAAGAAAAAAAAAGAACGTAAAGGTATGACTGTTGAAGAAAGGAAAAGAACCTTCTATACAGGGCTTTTGGAGGCCAAATCACCTGTGCCTGCTTCGTGTTGCATCTTCAAAGTTCCCGAGGTGCTACGAAGACAAAAAAAGGAGGCATACGCACCCGACATAGTCTCAATCGGGCCCTTTCATCGAGGTGCTAAAAAATTACAAATCGTGGAAAATGTGAAAAAATGGTATTTAAAATGTTTCCTCGCGCGCGAGAGCCAGCCCCCGAACTCGACAGGATTGAACCTGGACTTGCTTGACATAGATAGCTTGACTGAAAGCGTGGAGAGGTTGACTGAAAGGATCCAGGCACAGAAACTGGATAAACGCGCCCGGGCTTGTTATTCAGACCCATGCAGTCATCTTGACCAAAAGGACTTCATAGATATGCTCATACTCGATGGTTGTTTCTTGATAGAATTATTTCGAAAGGCACCGGTTCCAGCACGACAAGATGGTGACGACCCTATTTTCAACGTGCCTTGTATGCTCGAATATCTATACCATGATCTTCTGTTACTCGAAAATCAGCTGCCCTGGTTTGTGCTCGAGTTTTTCTATAAGCTAATTGAGAGTGACAACACCAACTCTCTCAATGCATTGGTATTCGACTTCTTCAAAAATTCAGTGGCTGATGCCAAAATTTTGAGGAACCCCGATCCCGAGTCTTCTGGTAAGATTCTTCACATACTTGATTTGATTAGATTTGCTCTCGTTCATACCCCAAGTTCGAAACCTGCCCCCACAACAGACATCCACCTGCCGCAAAGGATACCTAGTGCTGCTACTCTTTCAGAGGCAGGCGTTATATTTAAAAAGGCCAAAGAAAGTTTCATATTGAACATAACGTTCAACAATGGCGTTTTCACCATTCCTCAGTTGGCTATCGATGAGAGTACAGGTCCTTTGTTCAGGAACCTTATGGCCTTCGAGCAGTGTTATCACAGTTGCGAGCACAGGATAACATCCTATGCGGTTTTGATGGATAGCCTCATCGATACGAACAAGGATGTGGATCTTCTATGTGAGGAAGGGATAATAGCCAACTGGTTGAGTGCTGATGATGCTTCGAAGTTCTTCAACGATCTATACACTGACACCACAGTCATTAATTTTGTCTACGAGGATCTCTGCAAAAGAGTGAATGAATATCACAAAGCTCCATGCAACAGCCTGAGCCTGCAGGATAGCTTGACTGAAAGCGTGGAGAGGTTGACTGAAAGGATCAAGGGAGAGGAACTGGATAAACTCGCCCGGGATAGTTATTCAGACCCATGCAATCATCTTGACCAAAAGGACTTCATAGAGATGCTCATACTCGATGGTTGTTTCTTGATAGAACTATTTCGAAAGGCACCGGTTCCAGCACGACAAGATAATGACGACCCTATTTTCATCGTGCCTTGTATGCTCGAATATCTATACCTTCATCTTCTGTTACTCGAAAATAAGCTGTCTTGGTTTGTGCTCGAGTTTTTCAATAAGCTAATTGAGAGTGGTAACCCTGACTCTCTCAGAAAATTAGTATTGGACTTCTTCAAAAATTCAGTGGCTGATGCCAAAATTTTGAGCGACCCCAAGCCCAAGTTTTCTGGTAAGATTCTTCACAATCTTGATCTGATTAGAACTGCCCTCGTTGGTATCCCAGGTTCGAAGGCTACCTCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

597

Amino Acids

67.79

Weight (kDa)

5.65

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 62 - 430 2.2e-100 Plant protein of unknown function
DUF247 PF03140 439 - 590 2.5e-22 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 888
AasI GACNNNNNNGTC 1 cut(s) 1223
Acc36I ACCTGC 2 cut(s) 865, 888
AccB1I GGYRCC 2 cut(s) 553, 1474
AccI GTMKAC 1 cut(s) 1239
AccII CGCG 4 cut(s) 329, 331, 333, 450
AciI CCGC 2 cut(s) 884, 1094
AclI AACGTT 1 cut(s) 968
AclWI GGATC 6 cut(s) 418, 431, 773, 1143, 1254, 1352
AcsI RAATTY 4 cut(s) 742, 762, 1663, 1683
AfaI GTAC 1 cut(s) 1018
AgeI ACCGGT 2 cut(s) 556, 1477
AjnI CCWGG 4 cut(s) 366, 426, 656, 1765
AjuI GAANNNNNNNTTGG 2 cut(s) 935, 967
AluBI AGCT 7 cut(s) 390, 652, 685, 1280, 1311, 1573, 1606
AluI AGCT 7 cut(s) 390, 652, 685, 1280, 1311, 1573, 1606
Alw21I GWGCWC 3 cut(s) 669, 1077, 1590
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 6 cut(s) 418, 431, 773, 1143, 1254, 1352
AlwNI CAGNNNCTG 3 cut(s) 439, 752, 1673
Ama87I CYCGRG 6 cut(s) 197, 453, 668, 782, 1374, 1589
AoxI GGCC 4 cut(s) 153, 254, 939, 1044
ApaI GGGCCC 1 cut(s) 258
ApeKI GCWGC 2 cut(s) 652, 902
ApoI RAATTY 4 cut(s) 742, 762, 1663, 1683
AseI ATTAAT 1 cut(s) 1230
AsiGI ACCGGT 2 cut(s) 556, 1477
Asp700I GAANNNNTTC 4 cut(s) 45, 543, 1196, 1464
AspLEI GCGC 3 cut(s) 331, 333, 452
AspS9I GGNCC 3 cut(s) 254, 255, 1022
AsuC2I CCSGG 4 cut(s) 454, 455, 1375, 1376
AsuHPI GGTGA 4 cut(s) 41, 153, 590, 979
AsuII TTCGAA 5 cut(s) 547, 851, 1190, 1468, 1772
AvaI CYCGRG 6 cut(s) 197, 453, 668, 782, 1374, 1589
AvaII GGWCC 1 cut(s) 1022
BaeGI GKGCMC 1 cut(s) 258
BamHI GGATCC 1 cut(s) 423
BanI GGYRCC 2 cut(s) 553, 1474
BanII GRGCYC 1 cut(s) 258
BbsI GAAGAC 2 cut(s) 217, 780
Bbv12I GWGCWC 3 cut(s) 669, 1077, 1590
BbvI GCAGC 2 cut(s) 639, 889
BccI CCATC 4 cut(s) 515, 569, 1096, 1436
BciT130I CCWGG 4 cut(s) 368, 428, 658, 1767
BciVI GTATCC 2 cut(s) 885, 1772
BcnI CCSGG 4 cut(s) 454, 455, 1375, 1376
BcoDI GTCTC 1 cut(s) 250
BfaI CTAG 2 cut(s) 59, 897
BfmI CTRYAG 1 cut(s) 1301
BfuAI ACCTGC 2 cut(s) 865, 888
BfuI GTATCC 2 cut(s) 885, 1772
BisI GCNGC 3 cut(s) 653, 884, 903
BlsI GCNGC 3 cut(s) 654, 885, 904
Bme1390I CCNGG 8 cut(s) 368, 428, 454, 455, 658, 1375, 1376, 1767
Bme18I GGWCC 1 cut(s) 1022
BmeT110I CYCGRG 6 cut(s) 197, 453, 668, 782, 1374, 1589
BmgT120I GGNCC 3 cut(s) 254, 255, 1022
BmiI GGNNCC 8 cut(s) 256, 425, 555, 561, 773, 1037, 1476, 1482
BmrFI CCNGG 8 cut(s) 368, 428, 454, 455, 658, 1375, 1376, 1767
BmsI GCATC 5 cut(s) 192, 745, 1174, 1419, 1666
BpiI GAAGAC 2 cut(s) 217, 780
Bpu10I CCTNAGC 1 cut(s) 1295
Bpu14I TTCGAA 5 cut(s) 547, 851, 1190, 1468, 1772
BpuMI CCSGG 4 cut(s) 454, 455, 1375, 1376
Bsa29I ATCGAT 2 cut(s) 1008, 1116
BsaBI GATNNNNATC 1 cut(s) 1134
BsaJI CCNNGG 5 cut(s) 198, 453, 656, 1374, 1765
BsaWI WCCGGW 2 cut(s) 556, 1477
Bse118I RCCGGY 2 cut(s) 556, 1477
Bse1I ACTGG 4 cut(s) 50, 444, 1172, 1365
Bse8I GATNNNNATC 1 cut(s) 1134
BseBI CCWGG 4 cut(s) 368, 428, 658, 1767
BseCI ATCGAT 2 cut(s) 1008, 1116
BseDI CCNNGG 5 cut(s) 198, 453, 656, 1374, 1765
BseGI GGATG 3 cut(s) 873, 1085, 1135
BseJI GATNNNNATC 1 cut(s) 1134
BseMII CTCAG 3 cut(s) 1010, 1286, 1648
BseNI ACTGG 4 cut(s) 50, 444, 1172, 1365
BsePI GCGCGC 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 2 cut(s) 639, 889
Bsh1236I CGCG 4 cut(s) 329, 331, 333, 450
BshFI GGCC 4 cut(s) 155, 256, 941, 1046
BshNI GGYRCC 2 cut(s) 553, 1474
BshTI ACCGGT 2 cut(s) 556, 1477
BshVI ATCGAT 2 cut(s) 1008, 1116
BsiHKAI GWGCWC 3 cut(s) 669, 1077, 1590
BsiHKCI CYCGRG 6 cut(s) 197, 453, 668, 782, 1374, 1589
BsiSI CCGG 4 cut(s) 454, 557, 1375, 1478
BsmAI GTCTC 1 cut(s) 250
BsnI GGCC 4 cut(s) 155, 256, 941, 1046
BsoBI CYCGRG 6 cut(s) 197, 453, 668, 782, 1374, 1589
Bsp119I TTCGAA 5 cut(s) 547, 851, 1190, 1468, 1772
Bsp120I GGGCCC 1 cut(s) 254
Bsp1286I GDGCHC 4 cut(s) 258, 669, 1077, 1590
Bsp143I GATC 8 cut(s) 423, 628, 778, 1135, 1204, 1246, 1344, 1735
BspACI CCGC 2 cut(s) 884, 1094
BspANI GGCC 4 cut(s) 155, 256, 941, 1046
BspCNI CTCAG 3 cut(s) 1009, 1287, 1647
BspDI ATCGAT 2 cut(s) 1008, 1116
BspFNI CGCG 4 cut(s) 329, 331, 333, 450
BspLI GGNNCC 8 cut(s) 256, 425, 555, 561, 773, 1037, 1476, 1482
BspMAI CTGCAG 1 cut(s) 1305
BspMI ACCTGC 2 cut(s) 865, 888
BspPI GGATC 6 cut(s) 418, 431, 773, 1143, 1254, 1352
BspT104I TTCGAA 5 cut(s) 547, 851, 1190, 1468, 1772
BspT107I GGYRCC 2 cut(s) 553, 1474
BsrFI RCCGGY 2 cut(s) 556, 1477
BsrI ACTGG 4 cut(s) 50, 444, 1172, 1365
BssAI RCCGGY 2 cut(s) 556, 1477
BssECI CCNNGG 5 cut(s) 198, 453, 656, 1374, 1765
BssHII GCGCGC 1 cut(s) 329
BssMI GATC 8 cut(s) 423, 628, 778, 1135, 1204, 1246, 1344, 1735
Bst2UI CCWGG 4 cut(s) 368, 428, 658, 1767
Bst4CI ACNGT 3 cut(s) 112, 1067, 1225
BstBI TTCGAA 5 cut(s) 547, 851, 1190, 1468, 1772
BstC8I GCNNGC 6 cut(s) 171, 331, 341, 922, 1073, 1301
BstDEI CTNAG 3 cut(s) 996, 1295, 1634
BstEII GGTNACC 1 cut(s) 1619
BstF5I GGATG 3 cut(s) 873, 1085, 1135
BstFNI CGCG 4 cut(s) 329, 331, 333, 450
BstHHI GCGC 3 cut(s) 331, 333, 452
BstKTI GATC 8 cut(s) 426, 631, 781, 1138, 1207, 1249, 1347, 1738
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 8 cut(s) 423, 628, 778, 1135, 1204, 1246, 1344, 1735
BstMWI GCNNNNNNNGC 3 cut(s) 607, 1184, 1528
BstNI CCWGG 4 cut(s) 368, 428, 658, 1767
BstPI GGTNACC 1 cut(s) 1619
BstSCI CCNGG 8 cut(s) 366, 426, 452, 453, 656, 1373, 1374, 1765
BstSFI CTRYAG 1 cut(s) 1301
BstSLI GKGCMC 1 cut(s) 258
BstUI CGCG 4 cut(s) 329, 331, 333, 450
BstV1I GCAGC 2 cut(s) 639, 889
BstV2I GAAGAC 2 cut(s) 217, 780
BstX2I RGATCY 3 cut(s) 423, 1135, 1246
BstYI RGATCY 3 cut(s) 423, 1135, 1246
Bsu15I ATCGAT 2 cut(s) 1008, 1116
BsuI GTATCC 2 cut(s) 885, 1772
BsuRI GGCC 4 cut(s) 155, 256, 941, 1046
BsuTUI ATCGAT 2 cut(s) 1008, 1116
BtsCI GGATG 3 cut(s) 873, 1085, 1135
BtsI GCAGTG 2 cut(s) 19, 1061
BtsIMutI CAGTG 5 cut(s) 19, 753, 1061, 1212, 1674
BveI ACCTGC 2 cut(s) 865, 888
Cac8I GCNNGC 6 cut(s) 171, 331, 341, 922, 1073, 1301
CaiI CAGNNNCTG 3 cut(s) 439, 752, 1673
CfoI GCGC 3 cut(s) 331, 333, 452
Cfr10I RCCGGY 2 cut(s) 556, 1477
Cfr13I GGNCC 3 cut(s) 254, 255, 1022
Cfr9I CCCGGG 2 cut(s) 453, 1374
ClaI ATCGAT 2 cut(s) 1008, 1116
Csp6I GTAC 1 cut(s) 1017
CspAI ACCGGT 2 cut(s) 556, 1477
CviAII CATG 4 cut(s) 474, 626, 1284, 1395
CviQI GTAC 1 cut(s) 1017
DdeI CTNAG 3 cut(s) 996, 1295, 1634
DpnI GATC 8 cut(s) 425, 630, 780, 1137, 1206, 1248, 1346, 1737
DpnII GATC 8 cut(s) 423, 628, 778, 1135, 1204, 1246, 1344, 1735
DraI TTTAAA 2 cut(s) 315, 934
DrdI GACNNNNNNGTC 1 cut(s) 1223
DseDI GACNNNNNNGTC 1 cut(s) 1223
Eco24I GRGCYC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 1022
Eco88I CYCGRG 6 cut(s) 197, 453, 668, 782, 1374, 1589
Eco91I GGTNACC 1 cut(s) 1619
EcoO109I RGGNCCY 2 cut(s) 255, 1022
EcoO65I GGTNACC 1 cut(s) 1619
EcoRII CCWGG 4 cut(s) 366, 426, 656, 1765
EcoT22I ATGCAT 1 cut(s) 721
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 4 cut(s) 477, 629, 1287, 1398
FatI CATG 4 cut(s) 473, 625, 1283, 1394
FblI GTMKAC 1 cut(s) 1239
Fnu4HI GCNGC 3 cut(s) 653, 884, 903
FokI GGATG 3 cut(s) 860, 1072, 1142
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 3 cut(s) 653, 884, 903
FspBI CTAG 2 cut(s) 59, 897
GlaI GCGC 3 cut(s) 330, 332, 451
GluI GCNGC 3 cut(s) 653, 884, 903
HaeIII GGCC 4 cut(s) 155, 256, 941, 1046
HapII CCGG 4 cut(s) 454, 557, 1375, 1478
HhaI GCGC 3 cut(s) 331, 333, 452
Hin1II CATG 4 cut(s) 477, 629, 1287, 1398
Hin6I GCGC 3 cut(s) 329, 331, 450
HinP1I GCGC 3 cut(s) 329, 331, 450
HincII GTYRAC 2 cut(s) 414, 1335
HindII GTYRAC 2 cut(s) 414, 1335
HinfI GANTC 4 cut(s) 785, 799, 1628, 1720
HpaII CCGG 4 cut(s) 454, 557, 1375, 1478
HphI GGTGA 4 cut(s) 41, 153, 590, 979
Hpy166II GTNNAC 3 cut(s) 414, 1240, 1335
Hpy188I TCNGA 5 cut(s) 469, 916, 1390, 1637, 1740
Hpy188III TCNNGA 9 cut(s) 59, 197, 485, 532, 782, 1033, 1406, 1453, 1733
Hpy8I GTNNAC 3 cut(s) 414, 1240, 1335
HpyAV CCTTC 5 cut(s) 142, 1057, 1145, 1556, 1768
HpyCH4III ACNGT 3 cut(s) 112, 1067, 1225
HpyCH4IV ACGT 4 cut(s) 64, 97, 597, 968
HpyCH4V TGCA 7 cut(s) 183, 477, 719, 1254, 1287, 1303, 1398
HpyF10VI GCNNNNNNNGC 3 cut(s) 607, 1184, 1528
HpyF3I CTNAG 3 cut(s) 996, 1295, 1634
HpySE526I ACGT 4 cut(s) 64, 97, 597, 968
Hsp92II CATG 4 cut(s) 477, 629, 1287, 1398
HspAI GCGC 3 cut(s) 329, 331, 450
Kzo9I GATC 8 cut(s) 423, 628, 778, 1135, 1204, 1246, 1344, 1735
LmnI GCTCC 1 cut(s) 1285
Lsp1109I GCAGC 2 cut(s) 639, 889
LweI GCATC 5 cut(s) 192, 745, 1174, 1419, 1666
MaeI CTAG 2 cut(s) 59, 897
MaeII ACGT 4 cut(s) 64, 97, 597, 968
MaeIII GTNAC 5 cut(s) 578, 636, 695, 1557, 1619
MalI GATC 8 cut(s) 425, 630, 780, 1137, 1206, 1248, 1346, 1737
MauBI CGCGCGCG 1 cut(s) 329
MboI GATC 8 cut(s) 423, 628, 778, 1135, 1204, 1246, 1344, 1735
MflI RGATCY 3 cut(s) 423, 1135, 1246
MhlI GDGCHC 4 cut(s) 258, 669, 1077, 1590
MlyI GAGTC 2 cut(s) 794, 1622
Mph1103I ATGCAT 1 cut(s) 721
MroXI GAANNNNTTC 4 cut(s) 45, 543, 1196, 1464
MseI TTAA 3 cut(s) 314, 933, 1230
MslI CAYNNNNRTG 3 cut(s) 267, 506, 1427
MspA1I CMGCKG 1 cut(s) 652
MspI CCGG 4 cut(s) 454, 557, 1375, 1478
MspR9I CCNGG 8 cut(s) 368, 428, 454, 455, 658, 1375, 1376, 1767
MvaI CCWGG 4 cut(s) 368, 428, 658, 1767
MvnI CGCG 4 cut(s) 329, 331, 333, 450
MwoI GCNNNNNNNGC 3 cut(s) 607, 1184, 1528
NciI CCSGG 4 cut(s) 454, 455, 1375, 1376
NdeII GATC 8 cut(s) 423, 628, 778, 1135, 1204, 1246, 1344, 1735
NlaIII CATG 4 cut(s) 477, 629, 1287, 1398
NlaIV GGNNCC 8 cut(s) 256, 425, 555, 561, 773, 1037, 1476, 1482
NmuCI GTSAC 2 cut(s) 578, 695
NsiI ATGCAT 1 cut(s) 721
NspV TTCGAA 5 cut(s) 547, 851, 1190, 1468, 1772
PaeR7I CTCGAG 2 cut(s) 668, 1589
PaqCI CACCTGC 1 cut(s) 888
PauI GCGCGC 1 cut(s) 329
PdmI GAANNNNTTC 4 cut(s) 45, 543, 1196, 1464
PfeI GAWTC 2 cut(s) 799, 1720
PflFI GACNNNGTC 1 cut(s) 242
PinAI ACCGGT 2 cut(s) 556, 1477
PkrI GCNGC 3 cut(s) 654, 885, 904
PleI GAGTC 2 cut(s) 793, 1622
PpsI GAGTC 2 cut(s) 793, 1622
PpuMI RGGWCCY 1 cut(s) 1022
PshBI ATTAAT 1 cut(s) 1230
Psp1406I AACGTT 1 cut(s) 968
Psp5II RGGWCCY 1 cut(s) 1022
Psp6I CCWGG 4 cut(s) 366, 426, 656, 1765
PspEI GGTNACC 1 cut(s) 1619
PspGI CCWGG 4 cut(s) 366, 426, 656, 1765
PspN4I GGNNCC 8 cut(s) 256, 425, 555, 561, 773, 1037, 1476, 1482
PspOMI GGGCCC 1 cut(s) 254
PspPI GGNCC 3 cut(s) 254, 255, 1022
PspPPI RGGWCCY 1 cut(s) 1022
PspXI VCTCGAGB 2 cut(s) 668, 1589
PsrI GAACNNNNNNTAC 4 cut(s) 121, 153, 1753, 1785
PstI CTGCAG 1 cut(s) 1305
PstNI CAGNNNCTG 3 cut(s) 439, 752, 1673
PsuI RGATCY 3 cut(s) 423, 1135, 1246
PsyI GACNNNGTC 1 cut(s) 242
PteI GCGCGC 1 cut(s) 329
PvuII CAGCTG 1 cut(s) 652
RsaI GTAC 1 cut(s) 1018
RsaNI GTAC 1 cut(s) 1017
RseI CAYNNNNRTG 3 cut(s) 267, 506, 1427
SaqAI TTAA 3 cut(s) 314, 933, 1230
SatI GCNGC 3 cut(s) 653, 884, 903
Sau3AI GATC 8 cut(s) 423, 628, 778, 1135, 1204, 1246, 1344, 1735
Sau96I GGNCC 3 cut(s) 254, 255, 1022
SbfI CCTGCAGG 1 cut(s) 1305
SchI GAGTC 2 cut(s) 794, 1622
ScrFI CCNGG 8 cut(s) 368, 428, 454, 455, 658, 1375, 1376, 1767
SdaI CCTGCAGG 1 cut(s) 1305
SduI GDGCHC 4 cut(s) 258, 669, 1077, 1590
SfaNI GCATC 5 cut(s) 192, 745, 1174, 1419, 1666
SfcI CTRYAG 1 cut(s) 1301
Sfr274I CTCGAG 2 cut(s) 668, 1589
SfuI TTCGAA 5 cut(s) 547, 851, 1190, 1468, 1772
SinI GGWCC 1 cut(s) 1022
SlaI CTCGAG 2 cut(s) 668, 1589
SmaI CCCGGG 2 cut(s) 455, 1376
SmiMI CAYNNNNRTG 3 cut(s) 267, 506, 1427
SmlI CTYRAG 2 cut(s) 668, 1589
SmoI CTYRAG 2 cut(s) 668, 1589
SrfI GCCCGGGC 1 cut(s) 455
Sse8387I CCTGCAGG 1 cut(s) 1305
SsiI CCGC 2 cut(s) 884, 1094
SspMI CTAG 2 cut(s) 59, 897
StyD4I CCNGG 8 cut(s) 366, 426, 452, 453, 656, 1373, 1374, 1765
TaaI ACNGT 3 cut(s) 112, 1067, 1225
TaiI ACGT 4 cut(s) 67, 100, 600, 971
TatI WGTACW 1 cut(s) 1016
TauI GCSGC 1 cut(s) 886
TfiI GAWTC 2 cut(s) 799, 1720
Tru1I TTAA 3 cut(s) 314, 933, 1230
Tru9I TTAA 3 cut(s) 314, 933, 1230
TscAI CASTG 5 cut(s) 19, 753, 1061, 1219, 1674
TseFI GTSAC 2 cut(s) 578, 695
TseI GCWGC 2 cut(s) 652, 902
Tsp45I GTSAC 2 cut(s) 578, 695
TspDTI ATGAA 9 cut(s) 44, 251, 490, 827, 943, 1281, 1411, 1504, 1538
TspMI CCCGGG 2 cut(s) 453, 1374
TspRI CASTG 5 cut(s) 19, 753, 1061, 1219, 1674
Tth111I GACNNNGTC 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 1022
VspI ATTAAT 1 cut(s) 1230
XapI RAATTY 4 cut(s) 742, 762, 1663, 1683
XbaI TCTAGA 1 cut(s) 58
XcmI CCANNNNNNNNNTGG 1 cut(s) 997
XhoI CTCGAG 2 cut(s) 668, 1589
XmaI CCCGGG 2 cut(s) 453, 1374
XmiI GTMKAC 1 cut(s) 1239
XmnI GAANNNNTTC 4 cut(s) 45, 543, 1196, 1464
XspI CTAG 2 cut(s) 59, 897
Zsp2I ATGCAT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.