Rmu_sc0003555.1_g000010

calcium-binding protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003555.1
Physical Location & Seq
Forward (+)
38269 .. 40693
2425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003555.1_g000010.1.cds

Sequence Viewer

Length: 594 bp
atgggaggtagcagtgatatagaaaggggtgaagtggatgaaagcgttcaagttcatctagaacatagaggtatgactgttggaacattggaaaacaaccttcaatacaaaggttttgaacgccgaatcacctttgcttgctacatgttgcatcttcaaagactagaagacccaagtcctcaaacgggcttgtactccagttcgcctgacacatttaagttgctccgccacttgccgcagaggatacctactgctactgctctttcagaggcaggcgttaagtttgaaaaggtaaagggccgcccaggttgcatattgaacatagcgttcaaaaatggcttattcaccattcctcatttggctatcgatgagaggacgggtcctttgttcaggaaccttatggccttcgagcagtgctatcacagttgcttccataagataacatcctacgcgttttttatggataacctcatcgatacgagcaaggatgtggatcttctatgtgagaaagatataataggcaccttgttgagtgctgatgatgcttcgaagttcttcaacgagctataccatgacgccacatgcactctatga

Protein Analysis

197

Amino Acids

22.26

Weight (kDa)

5.73

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 521
AccII CGCG 1 cut(s) 452
AciI CCGC 3 cut(s) 226, 236, 301
AclWI GGATC 1 cut(s) 501
AcyI GRCGYC 1 cut(s) 576
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 185
AflIII ACRYGT 2 cut(s) 144, 450
AgsI TTSAA 8 cut(s) 50, 104, 119, 158, 287, 319, 331, 559
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 1 cut(s) 565
AluI AGCT 1 cut(s) 565
AlwI GGATC 1 cut(s) 501
AoxI GGCC 2 cut(s) 298, 402
ArsI GACNNNNNNTTYG 2 cut(s) 367, 399
Asp700I GAANNNNTTC 2 cut(s) 45, 554
AspS9I GGNCC 2 cut(s) 298, 380
AsuHPI GGTGA 3 cut(s) 41, 121, 337
AsuII TTCGAA 1 cut(s) 548
AvaII GGWCC 1 cut(s) 380
BanI GGYRCC 1 cut(s) 521
BbsI GAAGAC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 306
BciVI GTATCC 1 cut(s) 237
BfaI CTAG 2 cut(s) 59, 164
BfuI GTATCC 1 cut(s) 237
BisI GCNGC 2 cut(s) 236, 301
BlsI GCNGC 2 cut(s) 237, 302
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 380
BmgT120I GGNCC 2 cut(s) 298, 380
BmiI GGNNCC 3 cut(s) 381, 395, 523
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 2 cut(s) 160, 532
BoxI GACNNNNGTC 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 181
Bpu14I TTCGAA 1 cut(s) 548
Bsa29I ATCGAT 2 cut(s) 366, 474
BsaBI GATNNNNATC 1 cut(s) 492
BsaHI GRCGYC 1 cut(s) 576
BsaJI CCNNGG 1 cut(s) 304
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 492
BseBI CCWGG 1 cut(s) 306
BseCI ATCGAT 2 cut(s) 366, 474
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 3 cut(s) 43, 443, 493
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 198
Bsh1236I CGCG 1 cut(s) 452
BshFI GGCC 2 cut(s) 300, 404
BshNI GGYRCC 1 cut(s) 521
BshVI ATCGAT 2 cut(s) 366, 474
BslI CCNNNNNNNGG 1 cut(s) 185
BsnI GGCC 2 cut(s) 300, 404
Bsp119I TTCGAA 1 cut(s) 548
Bsp143I GATC 1 cut(s) 493
BspACI CCGC 3 cut(s) 226, 236, 301
BspANI GGCC 2 cut(s) 300, 404
BspDI ATCGAT 2 cut(s) 366, 474
BspFNI CGCG 1 cut(s) 452
BspLI GGNNCC 3 cut(s) 381, 395, 523
BspPI GGATC 1 cut(s) 501
BspT104I TTCGAA 1 cut(s) 548
BspT107I GGYRCC 1 cut(s) 521
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 1 cut(s) 493
BssNI GRCGYC 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 2 cut(s) 79, 425
BstACI GRCGYC 1 cut(s) 576
BstBI TTCGAA 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 139, 274
BstF5I GGATG 3 cut(s) 43, 443, 493
BstFNI CGCG 1 cut(s) 452
BstKTI GATC 1 cut(s) 496
BstMBI GATC 1 cut(s) 493
BstMWI GCNNNNNNNGC 2 cut(s) 309, 542
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 2 cut(s) 148, 585
BstPAI GACNNNNGTC 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 304
BstUI CGCG 1 cut(s) 452
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
Bsu15I ATCGAT 2 cut(s) 366, 474
BsuI GTATCC 1 cut(s) 237
BsuRI GGCC 2 cut(s) 300, 404
BsuTUI ATCGAT 2 cut(s) 366, 474
BtsCI GGATG 3 cut(s) 43, 443, 493
BtsI GCAGTG 2 cut(s) 19, 419
BtsIMutI CAGTG 2 cut(s) 19, 419
Cac8I GCNNGC 2 cut(s) 139, 274
Cfr13I GGNCC 2 cut(s) 298, 380
ClaI ATCGAT 2 cut(s) 366, 474
CseI GACGC 1 cut(s) 584
Csp6I GTAC 1 cut(s) 193
CviAII CATG 3 cut(s) 145, 572, 582
CviJI RGCY 6 cut(s) 189, 300, 339, 362, 404, 565
CviKI_1 RGCY 6 cut(s) 189, 300, 339, 362, 404, 565
CviQI GTAC 1 cut(s) 193
DpnI GATC 1 cut(s) 495
DpnII GATC 1 cut(s) 493
EciI GGCGGA 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 304
FaeI CATG 3 cut(s) 148, 575, 585
FatI CATG 3 cut(s) 144, 571, 581
Fnu4HI GCNGC 2 cut(s) 236, 301
FokI GGATG 3 cut(s) 50, 430, 500
Fsp4HI GCNGC 2 cut(s) 236, 301
FspBI CTAG 2 cut(s) 59, 164
GluI GCNGC 2 cut(s) 236, 301
GsuI CTGGAG 1 cut(s) 181
HaeIII GGCC 2 cut(s) 300, 404
HgaI GACGC 1 cut(s) 584
Hin1I GRCGYC 1 cut(s) 576
Hin1II CATG 3 cut(s) 148, 575, 585
HinfI GANTC 1 cut(s) 126
HphI GGTGA 3 cut(s) 41, 121, 337
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 2 cut(s) 59, 391
HpyAV CCTTC 2 cut(s) 110, 415
HpyCH4III ACNGT 2 cut(s) 79, 425
HpyCH4V TGCA 3 cut(s) 151, 312, 585
HpyF10VI GCNNNNNNNGC 2 cut(s) 309, 542
Hsp92I GRCGYC 1 cut(s) 576
Hsp92II CATG 3 cut(s) 148, 575, 585
Kzo9I GATC 1 cut(s) 493
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 6 cut(s) 211, 219, 258, 291, 318, 376
LweI GCATC 2 cut(s) 160, 532
MaeI CTAG 2 cut(s) 59, 164
MalI GATC 1 cut(s) 495
MboI GATC 1 cut(s) 493
MboII GAAGA 4 cut(s) 146, 179, 488, 547
MflI RGATCY 1 cut(s) 493
MluI ACGCGT 1 cut(s) 450
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 7 cut(s) 62, 189, 234, 262, 363, 366, 479
MroXI GAANNNNTTC 2 cut(s) 45, 554
MseI TTAA 2 cut(s) 216, 279
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 2 cut(s) 309, 542
NdeII GATC 1 cut(s) 493
NlaIII CATG 3 cut(s) 148, 575, 585
NlaIV GGNNCC 3 cut(s) 381, 395, 523
NspI RCATGY 2 cut(s) 148, 585
NspV TTCGAA 1 cut(s) 548
PciI ACATGT 1 cut(s) 144
PdmI GAANNNNTTC 2 cut(s) 45, 554
PfeI GAWTC 1 cut(s) 126
PkrI GCNGC 2 cut(s) 237, 302
PpuMI RGGWCCY 1 cut(s) 380
PscI ACATGT 1 cut(s) 144
PshAI GACNNNNGTC 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 3 cut(s) 381, 395, 523
PspPI GGNCC 2 cut(s) 298, 380
PspPPI RGGWCCY 1 cut(s) 380
PsuI RGATCY 1 cut(s) 493
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SaqAI TTAA 2 cut(s) 216, 279
SatI GCNGC 2 cut(s) 236, 301
Sau3AI GATC 1 cut(s) 493
Sau96I GGNCC 2 cut(s) 298, 380
ScrFI CCNGG 1 cut(s) 306
SfaNI GCATC 2 cut(s) 160, 532
SfuI TTCGAA 1 cut(s) 548
SinI GGWCC 1 cut(s) 380
SsiI CCGC 3 cut(s) 226, 236, 301
SspMI CTAG 2 cut(s) 59, 164
StyD4I CCNGG 1 cut(s) 304
TaaI ACNGT 2 cut(s) 79, 425
TaqI TCGA 4 cut(s) 366, 408, 474, 548
TatI WGTACW 1 cut(s) 192
TauI GCSGC 2 cut(s) 238, 303
TfiI GAWTC 1 cut(s) 126
Tru1I TTAA 2 cut(s) 216, 279
Tru9I TTAA 2 cut(s) 216, 279
TscAI CASTG 2 cut(s) 19, 419
TspDTI ATGAA 2 cut(s) 44, 54
TspRI CASTG 2 cut(s) 19, 419
VpaK11BI GGWCC 1 cut(s) 380
XbaI TCTAGA 1 cut(s) 58
XceI RCATGY 2 cut(s) 148, 585
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XmnI GAANNNNTTC 2 cut(s) 45, 554
XspI CTAG 2 cut(s) 59, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.