pycom17g01140

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000188
Physical Location & Seq
Reverse (-)
788029 .. 788772
744 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g01140.1

Sequence Viewer

Length: 744 bp
ATGGAAAGTGAGAGAGAAAGTAGCGAAGTTGACAATAGTACTTCCATGGAATCCGTTTGTATAGACACTGATGGTATCATTGAAGAATTGACAAGCACCATCGGAGCAAAGCTTCTCAACCATTCGCCATTGCCAGCATCCTGCTGCATATTCAGAGTTCCCCATCAGATTCGGCGACAAAAAATACAGGCATACGAATCTGATATCGTCTCAATCGGGCCCTTTCACCGAGGCCGCGGTGGCGATCAATTCCAACTCATGGAAAAGGTGAAGCGCTGGTACTTGCAGTGCCTTCTCGCAGACGCAAACATAACTTTGGCAACCTTGATCACAGGTGTCGTAGATTTCAACAAGCGTGCTCGTGATTGTTACGCAGAGCCATTGGATCATTTCAACAAGAAAGACTTCGTTGAGATGATGGTAATCGACGGATGTTTCCTAATCGAACTATTTCGAAAAGGACTTTCCGTCGATCAACAAGACGAGAACGACCCCGTTTTCAATGTGTCCTGCATGCTGCAATATCTTTACCATGATCGTTCTCCTGCTAGAAAATCAGCTGCCATGGTTTGTTCTCGAGCGGTTATACAATTCAACCGCCATGAAGAATACTACTTCCGAAGGAAATGCCTCCTCCCTCACCGACCTTGTCCTCAACTTCTTCAGACAATCCGTGGCGGACGATGGTATTTTTATTTTCAAACCGAGTCCGAATCTCCCTCCCGAACCCCTGCACATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

248

Amino Acids

28.56

Weight (kDa)

6.45

Isoelectric Point (pI)

65.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 50 - 179 5.5e-33 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 259
AccBSI CCGCTC 1 cut(s) 581
AccII CGCG 1 cut(s) 237
AciI CCGC 5 cut(s) 235, 237, 581, 598, 678
AclWI GGATC 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 647
AfaI GTAC 2 cut(s) 40, 281
AfeI AGCGCT 1 cut(s) 275
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 6 cut(s) 83, 349, 394, 502, 595, 701
AhdI GACNNNNNGTC 1 cut(s) 467
AluBI AGCT 2 cut(s) 112, 560
AluI AGCT 2 cut(s) 112, 560
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 1 cut(s) 393
Ama87I CYCGRG 1 cut(s) 576
Aor51HI AGCGCT 1 cut(s) 275
AoxI GGCC 2 cut(s) 218, 232
ApaI GGGCCC 1 cut(s) 222
ApeKI GCWGC 3 cut(s) 144, 517, 560
Asp700I GAANNNNTTC 2 cut(s) 404, 450
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 218, 219
AsuHPI GGTGA 3 cut(s) 218, 280, 632
AsuII TTCGAA 1 cut(s) 454
AvaI CYCGRG 1 cut(s) 576
BaeGI GKGCMC 1 cut(s) 222
BanII GRGCYC 1 cut(s) 222
BarI GAAGNNNNNNTAC 2 cut(s) 263, 295
BauI CACGAG 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 3 cut(s) 131, 504, 547
BccI CCATC 5 cut(s) 65, 107, 171, 412, 678
BcgI CGANNNNNNTGC 2 cut(s) 609, 643
BclI TGATCA 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 1 cut(s) 549
BfoI RGCGCY 1 cut(s) 277
BglI GCCNNNNNGGC 1 cut(s) 240
BisI GCNGC 4 cut(s) 145, 235, 518, 561
BlsI GCNGC 4 cut(s) 146, 236, 519, 562
BmcAI AGTACT 1 cut(s) 40
BmeRI GACNNNNNGTC 1 cut(s) 467
BmeT110I CYCGRG 1 cut(s) 576
BmgT120I GGNCC 2 cut(s) 218, 219
BmiI GGNNCC 1 cut(s) 220
BmsI GCATC 1 cut(s) 146
Bpu14I TTCGAA 1 cut(s) 454
BsaBI GATNNNNATC 1 cut(s) 422
BsaJI CCNNGG 5 cut(s) 45, 229, 235, 564, 673
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 128
Bse8I GATNNNNATC 1 cut(s) 422
BseDI CCNNGG 5 cut(s) 45, 229, 235, 564, 673
BseGI GGATG 2 cut(s) 137, 437
BseJI GATNNNNATC 1 cut(s) 422
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 623
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 3 cut(s) 131, 504, 547
BsgI GTGCAG 1 cut(s) 717
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 2 cut(s) 220, 234
BsiHKAI GWGCWC 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 576
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 214
BsmBI CGTCTC 1 cut(s) 214
BsnI GGCC 2 cut(s) 220, 234
BsoBI CYCGRG 1 cut(s) 576
Bsp119I TTCGAA 1 cut(s) 454
Bsp120I GGGCCC 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 222, 361
Bsp143I GATC 5 cut(s) 244, 327, 385, 472, 535
Bsp19I CCATGG 2 cut(s) 45, 564
BspACI CCGC 5 cut(s) 235, 237, 581, 598, 678
BspANI GGCC 2 cut(s) 220, 234
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 220
BspPI GGATC 1 cut(s) 393
BspT104I TTCGAA 1 cut(s) 454
BsrBI CCGCTC 1 cut(s) 581
BsrDI GCAATG 1 cut(s) 128
BssECI CCNNGG 5 cut(s) 45, 229, 235, 564, 673
BssMI GATC 5 cut(s) 244, 327, 385, 472, 535
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 2 cut(s) 45, 564
Bst2BI CACGAG 1 cut(s) 360
BstBI TTCGAA 1 cut(s) 454
BstC8I GCNNGC 3 cut(s) 135, 357, 515
BstDSI CCRYGG 4 cut(s) 45, 235, 564, 673
BstF5I GGATG 2 cut(s) 137, 437
BstFNI CGCG 1 cut(s) 237
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 5 cut(s) 247, 330, 388, 475, 538
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 5 cut(s) 244, 327, 385, 472, 535
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNSI RCATGY 1 cut(s) 517
BstSLI GKGCMC 1 cut(s) 222
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 3 cut(s) 131, 504, 547
BsuRI GGCC 2 cut(s) 220, 234
BtgI CCRYGG 4 cut(s) 45, 235, 564, 673
BtsCI GGATG 2 cut(s) 137, 437
BtsI GCAGTG 1 cut(s) 293
BtsIMutI CAGTG 2 cut(s) 66, 293
Cac8I GCNNGC 3 cut(s) 135, 357, 515
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 2 cut(s) 218, 219
Cfr42I CCGCGG 1 cut(s) 238
CseI GACGC 1 cut(s) 311
Csp6I GTAC 2 cut(s) 39, 280
CviAII CATG 6 cut(s) 46, 259, 514, 533, 565, 602
CviJI RGCY 5 cut(s) 112, 220, 234, 379, 560
CviKI_1 RGCY 5 cut(s) 112, 220, 234, 379, 560
CviQI GTAC 2 cut(s) 39, 280
DpnI GATC 5 cut(s) 246, 329, 387, 474, 537
DpnII GATC 5 cut(s) 244, 327, 385, 472, 535
DriI GACNNNNNGTC 1 cut(s) 467
Eam1105I GACNNNNNGTC 1 cut(s) 467
EciI GGCGGA 1 cut(s) 693
Eco130I CCWWGG 2 cut(s) 45, 564
Eco24I GRGCYC 1 cut(s) 222
Eco32I GATATC 1 cut(s) 205
Eco47III AGCGCT 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 647
Eco88I CYCGRG 1 cut(s) 576
EcoO109I RGGNCCY 1 cut(s) 219
EcoRV GATATC 1 cut(s) 205
EcoT14I CCWWGG 2 cut(s) 45, 564
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 2 cut(s) 45, 564
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 6 cut(s) 49, 262, 517, 536, 568, 605
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FatI CATG 6 cut(s) 45, 258, 513, 532, 564, 601
FbaI TGATCA 1 cut(s) 327
Fnu4HI GCNGC 4 cut(s) 145, 235, 518, 561
FokI GGATG 2 cut(s) 124, 444
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 4 cut(s) 145, 235, 518, 561
FspBI CTAG 1 cut(s) 549
GlaI GCGC 1 cut(s) 275
GluI GCNGC 4 cut(s) 145, 235, 518, 561
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 2 cut(s) 220, 234
HgaI GACGC 1 cut(s) 311
HhaI GCGC 1 cut(s) 276
Hin1II CATG 6 cut(s) 49, 262, 517, 536, 568, 605
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 5 cut(s) 50, 169, 197, 707, 713
HphI GGTGA 3 cut(s) 218, 280, 632
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 7 cut(s) 104, 155, 168, 202, 620, 666, 712
Hpy188III TCNNGA 3 cut(s) 362, 576, 723
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 2 cut(s) 431, 473
HpyAV CCTTC 2 cut(s) 302, 615
HpyCH4V TGCA 5 cut(s) 147, 286, 513, 520, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
Hsp92II CATG 6 cut(s) 49, 262, 517, 536, 568, 605
HspAI GCGC 1 cut(s) 274
Ksp22I TGATCA 1 cut(s) 327
KspI CCGCGG 1 cut(s) 238
Kzo9I GATC 5 cut(s) 244, 327, 385, 472, 535
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 7 cut(s) 147, 154, 173, 262, 318, 523, 558
Lsp1109I GCAGC 3 cut(s) 131, 504, 547
LweI GCATC 1 cut(s) 146
MaeI CTAG 1 cut(s) 549
MaeIII GTNAC 1 cut(s) 368
MalI GATC 5 cut(s) 246, 329, 387, 474, 537
MbiI CCGCTC 1 cut(s) 581
MboI GATC 5 cut(s) 244, 327, 385, 472, 535
MboII GAAGA 3 cut(s) 95, 617, 653
MhlI GDGCHC 2 cut(s) 222, 361
MluCI AATT 3 cut(s) 86, 248, 590
MlyI GAGTC 1 cut(s) 716
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 6 cut(s) 224, 641, 644, 648, 663, 730
MroXI GAANNNNTTC 2 cut(s) 404, 450
MspA1I CMGCKG 2 cut(s) 237, 560
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 240
NcoI CCATGG 2 cut(s) 45, 564
NdeII GATC 5 cut(s) 244, 327, 385, 472, 535
NlaIII CATG 6 cut(s) 49, 262, 517, 536, 568, 605
NlaIV GGNNCC 1 cut(s) 220
NspI RCATGY 1 cut(s) 517
NspV TTCGAA 1 cut(s) 454
PaeI GCATGC 1 cut(s) 517
PaeR7I CTCGAG 1 cut(s) 576
PdmI GAANNNNTTC 2 cut(s) 404, 450
PfeI GAWTC 4 cut(s) 50, 169, 197, 713
PflFI GACNNNGTC 1 cut(s) 648
PflMI CCANNNNNTGG 1 cut(s) 259
PkrI GCNGC 4 cut(s) 146, 236, 519, 562
PleI GAGTC 1 cut(s) 715
PpsI GAGTC 1 cut(s) 715
PspN4I GGNNCC 1 cut(s) 220
PspOMI GGGCCC 1 cut(s) 218
PspPI GGNCC 2 cut(s) 218, 219
PsyI GACNNNGTC 1 cut(s) 648
PvuII CAGCTG 1 cut(s) 560
RsaI GTAC 2 cut(s) 40, 281
RsaNI GTAC 2 cut(s) 39, 280
SacII CCGCGG 1 cut(s) 238
SatI GCNGC 4 cut(s) 145, 235, 518, 561
Sau3AI GATC 5 cut(s) 244, 327, 385, 472, 535
Sau96I GGNCC 2 cut(s) 218, 219
ScaI AGTACT 1 cut(s) 40
SchI GAGTC 1 cut(s) 716
SduI GDGCHC 2 cut(s) 222, 361
SetI ASST 6 cut(s) 114, 270, 326, 337, 562, 649
SfaNI GCATC 1 cut(s) 146
Sfr274I CTCGAG 1 cut(s) 576
Sfr303I CCGCGG 1 cut(s) 238
SfuI TTCGAA 1 cut(s) 454
SgrBI CCGCGG 1 cut(s) 238
SlaI CTCGAG 1 cut(s) 576
SmlI CTYRAG 1 cut(s) 576
SmoI CTYRAG 1 cut(s) 576
SphI GCATGC 1 cut(s) 517
Sse9I AATT 3 cut(s) 86, 248, 590
SsiI CCGC 5 cut(s) 235, 237, 581, 598, 678
SspMI CTAG 1 cut(s) 549
StyI CCWWGG 2 cut(s) 45, 564
TaqI TCGA 5 cut(s) 426, 444, 454, 471, 577
TasI AATT 3 cut(s) 86, 248, 590
TatI WGTACW 1 cut(s) 38
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 4 cut(s) 50, 169, 197, 713
TscAI CASTG 2 cut(s) 73, 293
TseI GCWGC 3 cut(s) 144, 517, 560
TspDTI ATGAA 1 cut(s) 618
TspGWI ACGGA 4 cut(s) 43, 444, 457, 662
TspRI CASTG 2 cut(s) 73, 293
Tth111I GACNNNGTC 1 cut(s) 648
Van91I CCANNNNNTGG 1 cut(s) 259
XceI RCATGY 1 cut(s) 517
XhoI CTCGAG 1 cut(s) 576
XmnI GAANNNNTTC 2 cut(s) 404, 450
XspI CTAG 1 cut(s) 549
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.