Rmu_sc0003984.1_g000012

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003984.1
OG0000188
Physical Location & Seq
Reverse (-)
41834 .. 42550
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003984.1_g000012.1.cds

Sequence Viewer

Length: 717 bp
atgcttatactcgatggttgtttcttgatagaattatttcggaaggcatcttttgtagacaaacaagataatgacgaccccattttcaacgtgccttgtatgctccaatatctataccatgatcttctgctactcgaaaatcagctgccttggtttgtgctcgtgtttttctatgacctaattgagagtggtcaccataatttcctcagtaaattggtaatcgacttcttcaaaaattcagtggctgatcctaacgttttcagctacctcaatcccgagtctgctgataaaattcttcatatacttgatctgattagaatttccctcattgaaggactagaagacctgtacccaagtcctcagacggaggcgagaacaagcgacacatttaagttgatccgccacttgccgcagaggatacctagtgctactgctcttttagaggcatgcattaagtttgaaaaggtaaagggcttcccatgttgcatattgaacataacgttcaaaactagcgtattcaccattcctcatttggctatcgatgagaggacaggtcctttgttaaggaaccttatggacttcgagcagtgctatcacaattgcttccataagataaaatcctacgcgtttttgatggataacctcattgatacgagcaaggatgtggatcttctatgtgagaaagatcgatataataggcaccttgttgagtgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

238

Amino Acids

27.76

Weight (kDa)

5.31

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 699
AccI GTMKAC 1 cut(s) 57
AccII CGCG 1 cut(s) 626
AciI CCGC 2 cut(s) 400, 410
AclI AACGTT 2 cut(s) 255, 500
AclWI GGATC 3 cut(s) 242, 391, 675
AcsI RAATTY 3 cut(s) 235, 291, 318
AfaI GTAC 1 cut(s) 350
AflIII ACRYGT 1 cut(s) 624
AgsI TTSAA 6 cut(s) 88, 232, 332, 461, 493, 505
AluBI AGCT 2 cut(s) 145, 264
AluI AGCT 2 cut(s) 145, 264
Alw21I GWGCWC 1 cut(s) 162
AlwI GGATC 3 cut(s) 242, 391, 675
AlwNI CAGNNNCTG 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 145
ApoI RAATTY 3 cut(s) 235, 291, 318
ArsI GACNNNNNNTTYG 2 cut(s) 541, 573
Asp700I GAANNNNTTC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 554
AsuHPI GGTGA 2 cut(s) 185, 511
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 1 cut(s) 554
BanI GGYRCC 1 cut(s) 699
BauI CACGAG 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 132
BccI CCATC 2 cut(s) 8, 628
BciVI GTATCC 1 cut(s) 411
BfaI CTAG 3 cut(s) 338, 423, 510
BfuI GTATCC 1 cut(s) 411
BisI GCNGC 2 cut(s) 146, 410
BlsI GCNGC 2 cut(s) 147, 411
Bme18I GGWCC 1 cut(s) 554
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 554
BmiI GGNNCC 2 cut(s) 569, 701
BmsI GCATC 1 cut(s) 56
BpiI GAAGAC 1 cut(s) 348
Bsa29I ATCGAT 2 cut(s) 540, 688
BsaBI GATNNNNATC 1 cut(s) 666
BsaJI CCNNGG 1 cut(s) 149
Bse8I GATNNNNATC 1 cut(s) 666
BseCI ATCGAT 2 cut(s) 540, 688
BseDI CCNNGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 667
BseJI GATNNNNATC 1 cut(s) 666
BseMII CTCAG 2 cut(s) 220, 374
BseXI GCAGC 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 626
BshNI GGYRCC 1 cut(s) 699
BshVI ATCGAT 2 cut(s) 540, 688
BsiHKAI GWGCWC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 6 cut(s) 121, 247, 307, 396, 667, 685
BspACI CCGC 2 cut(s) 400, 410
BspCNI CTCAG 2 cut(s) 219, 373
BspDI ATCGAT 2 cut(s) 540, 688
BspFNI CGCG 1 cut(s) 626
BspLI GGNNCC 2 cut(s) 569, 701
BspPI GGATC 3 cut(s) 242, 391, 675
BspT107I GGYRCC 1 cut(s) 699
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 6 cut(s) 121, 247, 307, 396, 667, 685
BssSI CACGAG 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 149
Bst2BI CACGAG 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 448
BstDEI CTNAG 2 cut(s) 206, 360
BstEII GGTNACC 1 cut(s) 191
BstF5I GGATG 1 cut(s) 667
BstFNI CGCG 1 cut(s) 626
BstKTI GATC 6 cut(s) 124, 250, 310, 399, 670, 688
BstMBI GATC 6 cut(s) 121, 247, 307, 396, 667, 685
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNSI RCATGY 1 cut(s) 450
BstPI GGTNACC 1 cut(s) 191
BstUI CGCG 1 cut(s) 626
BstV1I GCAGC 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 667
BstYI RGATCY 1 cut(s) 667
Bsu15I ATCGAT 2 cut(s) 540, 688
BsuI GTATCC 1 cut(s) 411
BsuTUI ATCGAT 2 cut(s) 540, 688
BtsCI GGATG 1 cut(s) 667
BtsI GCAGTG 1 cut(s) 593
BtsIMutI CAGTG 2 cut(s) 246, 593
Cac8I GCNNGC 1 cut(s) 448
CaiI CAGNNNCTG 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 554
ClaI ATCGAT 2 cut(s) 540, 688
Csp6I GTAC 1 cut(s) 349
CviAII CATG 3 cut(s) 119, 447, 480
CviJI RGCY 5 cut(s) 145, 245, 264, 474, 536
CviKI_1 RGCY 5 cut(s) 145, 245, 264, 474, 536
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 2 cut(s) 206, 360
DpnI GATC 6 cut(s) 123, 249, 309, 398, 669, 687
DpnII GATC 6 cut(s) 121, 247, 307, 396, 667, 685
EciI GGCGGA 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 554
Eco88I CYCGRG 1 cut(s) 275
Eco91I GGTNACC 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 554
EcoO65I GGTNACC 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 3 cut(s) 122, 450, 483
FatI CATG 3 cut(s) 118, 446, 479
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 146, 410
FokI GGATG 1 cut(s) 674
Fsp4HI GCNGC 2 cut(s) 146, 410
FspBI CTAG 3 cut(s) 338, 423, 510
GluI GCNGC 2 cut(s) 146, 410
Hin1II CATG 3 cut(s) 122, 450, 483
HinfI GANTC 1 cut(s) 278
HphI GGTGA 2 cut(s) 185, 511
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 3 cut(s) 42, 312, 363
Hpy188III TCNNGA 2 cut(s) 25, 275
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 2 cut(s) 37, 326
HpyCH4IV ACGT 3 cut(s) 90, 255, 500
HpyCH4V TGCA 2 cut(s) 450, 486
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 2 cut(s) 206, 360
HpySE526I ACGT 3 cut(s) 90, 255, 500
Hsp92II CATG 3 cut(s) 122, 450, 483
Kzo9I GATC 6 cut(s) 121, 247, 307, 396, 667, 685
LmnI GCTCC 1 cut(s) 108
LpnPI CCDG 2 cut(s) 359, 537
Lsp1109I GCAGC 1 cut(s) 132
LweI GCATC 1 cut(s) 56
MaeI CTAG 3 cut(s) 338, 423, 510
MaeII ACGT 3 cut(s) 90, 255, 500
MaeIII GTNAC 1 cut(s) 191
MalI GATC 6 cut(s) 123, 249, 309, 398, 669, 687
MboI GATC 6 cut(s) 121, 247, 307, 396, 667, 685
MboII GAAGA 5 cut(s) 116, 220, 287, 353, 662
MfeI CAATTG 1 cut(s) 598
MflI RGATCY 1 cut(s) 667
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 8 cut(s) 32, 180, 199, 212, 235, 291, 318, 598
MluI ACGCGT 1 cut(s) 624
MlyI GAGTC 1 cut(s) 287
Mph1103I ATGCAT 1 cut(s) 452
MroXI GAANNNNTTC 1 cut(s) 36
MseI TTAA 3 cut(s) 390, 453, 563
MspA1I CMGCKG 1 cut(s) 145
MunI CAATTG 1 cut(s) 598
MvnI CGCG 1 cut(s) 626
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 6 cut(s) 121, 247, 307, 396, 667, 685
NlaIII CATG 3 cut(s) 122, 450, 483
NlaIV GGNNCC 2 cut(s) 569, 701
NmuCI GTSAC 1 cut(s) 191
NsiI ATGCAT 1 cut(s) 452
NspI RCATGY 1 cut(s) 450
PaeI GCATGC 1 cut(s) 450
PdmI GAANNNNTTC 1 cut(s) 36
PkrI GCNGC 2 cut(s) 147, 411
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PpuMI RGGWCCY 1 cut(s) 554
Psp1406I AACGTT 2 cut(s) 255, 500
Psp5II RGGWCCY 1 cut(s) 554
PspEI GGTNACC 1 cut(s) 191
PspN4I GGNNCC 2 cut(s) 569, 701
PspPI GGNCC 1 cut(s) 554
PspPPI RGGWCCY 1 cut(s) 554
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 1 cut(s) 667
PvuII CAGCTG 1 cut(s) 145
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SaqAI TTAA 3 cut(s) 390, 453, 563
SatI GCNGC 2 cut(s) 146, 410
Sau3AI GATC 6 cut(s) 121, 247, 307, 396, 667, 685
Sau96I GGNCC 1 cut(s) 554
SchI GAGTC 1 cut(s) 287
SduI GDGCHC 1 cut(s) 162
SfaNI GCATC 1 cut(s) 56
SinI GGWCC 1 cut(s) 554
SphI GCATGC 1 cut(s) 450
Sse9I AATT 8 cut(s) 32, 180, 199, 212, 235, 291, 318, 598
SsiI CCGC 2 cut(s) 400, 410
SspMI CTAG 3 cut(s) 338, 423, 510
StyI CCWWGG 1 cut(s) 149
TaiI ACGT 3 cut(s) 93, 258, 503
TaqI TCGA 6 cut(s) 12, 135, 222, 540, 582, 688
TasI AATT 8 cut(s) 32, 180, 199, 212, 235, 291, 318, 598
TauI GCSGC 1 cut(s) 412
Tru1I TTAA 3 cut(s) 390, 453, 563
Tru9I TTAA 3 cut(s) 390, 453, 563
TscAI CASTG 2 cut(s) 246, 593
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 287
TspGWI ACGGA 1 cut(s) 380
TspRI CASTG 2 cut(s) 246, 593
VpaK11BI GGWCC 1 cut(s) 554
XapI RAATTY 3 cut(s) 235, 291, 318
XceI RCATGY 1 cut(s) 450
XcmI CCANNNNNNNNNTGG 1 cut(s) 529
XmiI GTMKAC 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 3 cut(s) 338, 423, 510
Zsp2I ATGCAT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.