MD00G1111300.v1.1

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000188
Physical Location & Seq
Reverse (-)
23249177 .. 23250040
864 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1111300.v1.1.491

Sequence Viewer

Length: 864 bp
ATGGATCGGTCACACGACAGGGATATGGAGTTAGAAGCATCGATCAATAAACTCATCAATTACATTTTAGATCACAAGAAAGTACAAGCCATGGCTGAGTTTGAGAAAAAAGCTCGTGATTTTTATGCGCATCCGTTTGATCCTCTGATGAAAATGGAGTTTCTCCACATGATGATACTTGATGGTTGCTTCCTAGTACAAATATTTAGGAAGTTTGTGAATAAGGAACAGAGGGACATTAATGACCCTTTATTCAACATGGATTGCATGTTCCAGTACATATGCCATGACCTTTTGCTCTTAGAAAATCAGATTCCTTGGTTTGTCCTCCAGTCCATGTATGAGCTCACCGTGAAGTATTACCAGAACCATGAGCGCTGCCTCTCGGAACTCATCCTCACCGCGCTCAGCTCACAACCACAACTGTCCCATAACTGCCGGTGGTATCTGGATCATCTAAGAGGAAATAGTTACAAAGAGGACGAAAGTGTGCTCCACATTCTCGATCTCATAAGAACTTCCATAGTTTTCTCATTCACCGAACGCTATGAGAAACCTCCCTTCGATGCAAAGATACAACTGATAGCTTCAGCAACTGCTCTTTCTGAGGCCGGCATTAGATTCAAAATGAGCTCCGATGAATGTAAAAGCATAATGAACATCGAATGCGAGAATGGGGTTATTATGATTCCACATCTAGAAATTGGAGAGTTAACTGAATCGATATTCAGGAACCTGATCGCCTTGGAGCAATGCTGTTATGGTCGTTCGCATAAAATCACATCTTATGCCGTTCTGATGGATAACCTCCTCGGCTCTAGCAACGATATAAAAATTTCTCTGCGACAAGGAAATTATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

288

Amino Acids

33.73

Weight (kDa)

5.67

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 27 - 279 1.6e-61 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 129
AccII CGCG 1 cut(s) 404
AciI CCGC 1 cut(s) 402
AclWI GGATC 3 cut(s) 12, 134, 459
AcsI RAATTY 1 cut(s) 834
AcuI CTGAAG 1 cut(s) 573
AfaI GTAC 3 cut(s) 84, 198, 278
AfeI AGCGCT 1 cut(s) 377
AgsI TTSAA 2 cut(s) 256, 625
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AluBI AGCT 5 cut(s) 113, 346, 411, 587, 633
AluI AGCT 5 cut(s) 113, 346, 411, 587, 633
Alw21I GWGCWC 3 cut(s) 348, 495, 635
AlwI GGATC 3 cut(s) 12, 134, 459
AlwNI CAGNNNCTG 1 cut(s) 596
Aor51HI AGCGCT 1 cut(s) 377
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 1 cut(s) 378
ApoI RAATTY 1 cut(s) 834
AseI ATTAAT 1 cut(s) 240
AspLEI GCGC 3 cut(s) 130, 378, 406
AsuHPI GGTGA 3 cut(s) 340, 391, 529
BanII GRGCYC 2 cut(s) 348, 635
BauI CACGAG 1 cut(s) 114
Bbv12I GWGCWC 3 cut(s) 348, 495, 635
BbvI GCAGC 1 cut(s) 365
BccI CCATC 2 cut(s) 176, 793
BceAI ACGGC 1 cut(s) 776
BfaI CTAG 3 cut(s) 194, 698, 819
BfoI RGCGCY 1 cut(s) 379
BisI GCNGC 1 cut(s) 379
BlpI GCTNAGC 1 cut(s) 407
BlsI GCNGC 1 cut(s) 380
BmiI GGNNCC 1 cut(s) 734
BmsI GCATC 3 cut(s) 47, 139, 556
BpmI CTGGAG 1 cut(s) 314
Bpu1102I GCTNAGC 1 cut(s) 407
Bsa29I ATCGAT 2 cut(s) 41, 722
BsaJI CCNNGG 4 cut(s) 90, 317, 744, 811
Bse118I RCCGGY 2 cut(s) 438, 611
Bse1I ACTGG 2 cut(s) 274, 331
Bse3DI GCAATG 1 cut(s) 758
BseCI ATCGAT 2 cut(s) 41, 722
BseDI CCNNGG 4 cut(s) 90, 317, 744, 811
BseGI GGATG 2 cut(s) 130, 393
BseMI GCAATG 1 cut(s) 758
BseMII CTCAG 3 cut(s) 87, 421, 597
BseNI ACTGG 2 cut(s) 274, 331
BseRI GAGGAG 1 cut(s) 800
BseXI GCAGC 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 404
BshFI GGCC 1 cut(s) 611
BshVI ATCGAT 2 cut(s) 41, 722
BsiHKAI GWGCWC 3 cut(s) 348, 495, 635
BsiSI CCGG 2 cut(s) 439, 612
BslFI GGGAC 2 cut(s) 248, 412
BsmFI GGGAC 2 cut(s) 248, 412
BsmI GAATGC 1 cut(s) 671
BsnI GGCC 1 cut(s) 611
Bsp1286I GDGCHC 3 cut(s) 348, 495, 635
Bsp143I GATC 7 cut(s) 4, 42, 70, 139, 451, 505, 738
Bsp1720I GCTNAGC 1 cut(s) 407
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 1 cut(s) 402
BspANI GGCC 1 cut(s) 611
BspCNI CTCAG 3 cut(s) 88, 420, 598
BspDI ATCGAT 2 cut(s) 41, 722
BspFNI CGCG 1 cut(s) 404
BspLI GGNNCC 1 cut(s) 734
BspPI GGATC 3 cut(s) 12, 134, 459
BsrDI GCAATG 1 cut(s) 758
BsrFI RCCGGY 2 cut(s) 438, 611
BsrI ACTGG 2 cut(s) 274, 331
BssAI RCCGGY 2 cut(s) 438, 611
BssECI CCNNGG 4 cut(s) 90, 317, 744, 811
BssMI GATC 7 cut(s) 4, 42, 70, 139, 451, 505, 738
BssSI CACGAG 1 cut(s) 114
BssT1I CCWWGG 3 cut(s) 90, 317, 744
Bst2BI CACGAG 1 cut(s) 114
Bst4CI ACNGT 2 cut(s) 352, 426
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 5 cut(s) 96, 301, 407, 458, 606
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 130, 393
BstFNI CGCG 1 cut(s) 404
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 3 cut(s) 130, 378, 406
BstKTI GATC 7 cut(s) 7, 45, 73, 142, 454, 508, 741
BstMBI GATC 7 cut(s) 4, 42, 70, 139, 451, 505, 738
BstNSI RCATGY 1 cut(s) 271
BstUI CGCG 1 cut(s) 404
BstV1I GCAGC 1 cut(s) 365
Bsu15I ATCGAT 2 cut(s) 41, 722
BsuRI GGCC 1 cut(s) 611
BsuTUI ATCGAT 2 cut(s) 41, 722
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 2 cut(s) 130, 393
Cac8I GCNNGC 1 cut(s) 613
CaiI CAGNNNCTG 1 cut(s) 596
CfoI GCGC 3 cut(s) 130, 378, 406
Cfr10I RCCGGY 2 cut(s) 438, 611
ClaI ATCGAT 2 cut(s) 41, 722
Csp6I GTAC 3 cut(s) 83, 197, 277
CviAII CATG 7 cut(s) 91, 169, 259, 268, 287, 337, 371
CviJI RGCY 9 cut(s) 89, 95, 113, 346, 411, 587, 611, 633, 816
CviKI_1 RGCY 9 cut(s) 89, 95, 113, 346, 411, 587, 611, 633, 816
CviQI GTAC 3 cut(s) 83, 197, 277
DdeI CTNAG 5 cut(s) 96, 301, 407, 458, 606
DpnI GATC 7 cut(s) 6, 44, 72, 141, 453, 507, 740
DpnII GATC 7 cut(s) 4, 42, 70, 139, 451, 505, 738
Ecl136II GAGCTC 2 cut(s) 346, 633
Eco130I CCWWGG 3 cut(s) 90, 317, 744
Eco24I GRGCYC 2 cut(s) 348, 635
Eco47III AGCGCT 1 cut(s) 377
Eco53kI GAGCTC 2 cut(s) 346, 633
Eco57I CTGAAG 1 cut(s) 573
EcoICRI GAGCTC 2 cut(s) 346, 633
EcoT14I CCWWGG 3 cut(s) 90, 317, 744
EcoT38I GRGCYC 2 cut(s) 348, 635
ErhI CCWWGG 3 cut(s) 90, 317, 744
FaeI CATG 7 cut(s) 94, 172, 262, 271, 290, 340, 374
FaqI GGGAC 2 cut(s) 248, 412
FatI CATG 7 cut(s) 90, 168, 258, 267, 286, 336, 370
FauNDI CATATG 1 cut(s) 281
Fnu4HI GCNGC 1 cut(s) 379
FokI GGATG 2 cut(s) 117, 380
FriOI GRGCYC 2 cut(s) 348, 635
Fsp4HI GCNGC 1 cut(s) 379
FspAI RTGCGCAY 1 cut(s) 129
FspBI CTAG 3 cut(s) 194, 698, 819
FspI TGCGCA 1 cut(s) 129
GlaI GCGC 3 cut(s) 129, 377, 405
GluI GCNGC 1 cut(s) 379
GsuI CTGGAG 1 cut(s) 314
HaeII RGCGCY 1 cut(s) 379
HaeIII GGCC 1 cut(s) 611
HapII CCGG 2 cut(s) 439, 612
HhaI GCGC 3 cut(s) 130, 378, 406
Hin1II CATG 7 cut(s) 94, 172, 262, 271, 290, 340, 374
Hin6I GCGC 3 cut(s) 128, 376, 404
HinP1I GCGC 3 cut(s) 128, 376, 404
HincII GTYRAC 1 cut(s) 714
HindII GTYRAC 1 cut(s) 714
HinfI GANTC 4 cut(s) 313, 621, 688, 719
HpaI GTTAAC 1 cut(s) 714
HpaII CCGG 2 cut(s) 439, 612
HphI GGTGA 3 cut(s) 340, 391, 529
Hpy166II GTNNAC 1 cut(s) 714
Hpy188I TCNGA 6 cut(s) 147, 312, 388, 607, 637, 798
Hpy188III TCNNGA 5 cut(s) 116, 449, 503, 698, 730
Hpy8I GTNNAC 1 cut(s) 714
HpyAV CCTTC 1 cut(s) 571
HpyCH4III ACNGT 2 cut(s) 352, 426
HpyCH4V TGCA 2 cut(s) 267, 569
HpyF3I CTNAG 5 cut(s) 96, 301, 407, 458, 606
Hsp92II CATG 7 cut(s) 94, 172, 262, 271, 290, 340, 374
HspAI GCGC 3 cut(s) 128, 376, 404
KroI GCCGGC 1 cut(s) 611
KroNI GCCGGC 1 cut(s) 613
KspAI GTTAAC 1 cut(s) 714
Kzo9I GATC 7 cut(s) 4, 42, 70, 139, 451, 505, 738
LmnI GCTCC 3 cut(s) 498, 638, 748
LpnPI CCDG 9 cut(s) 4, 287, 344, 377, 434, 452, 625, 715, 749
Lsp1109I GCAGC 1 cut(s) 365
LweI GCATC 3 cut(s) 47, 139, 556
MaeI CTAG 3 cut(s) 194, 698, 819
MaeIII GTNAC 2 cut(s) 9, 470
MalI GATC 7 cut(s) 6, 44, 72, 141, 453, 507, 740
MboI GATC 7 cut(s) 4, 42, 70, 139, 451, 505, 738
MhlI GDGCHC 3 cut(s) 348, 495, 635
MluCI AATT 4 cut(s) 58, 702, 834, 853
MroNI GCCGGC 1 cut(s) 611
MseI TTAA 2 cut(s) 240, 713
MspI CCGG 2 cut(s) 439, 612
Mva1269I GAATGC 1 cut(s) 671
MvnI CGCG 1 cut(s) 404
NaeI GCCGGC 1 cut(s) 613
NcoI CCATGG 1 cut(s) 90
NdeI CATATG 1 cut(s) 281
NdeII GATC 7 cut(s) 4, 42, 70, 139, 451, 505, 738
NgoMIV GCCGGC 1 cut(s) 611
NlaIII CATG 7 cut(s) 94, 172, 262, 271, 290, 340, 374
NlaIV GGNNCC 1 cut(s) 734
NmeAIII GCCGAG 1 cut(s) 792
NmuCI GTSAC 1 cut(s) 9
NsbI TGCGCA 1 cut(s) 129
NspI RCATGY 1 cut(s) 271
PctI GAATGC 1 cut(s) 671
PdiI GCCGGC 1 cut(s) 613
PfeI GAWTC 4 cut(s) 313, 621, 688, 719
PkrI GCNGC 1 cut(s) 380
PshBI ATTAAT 1 cut(s) 240
Psp124BI GAGCTC 2 cut(s) 348, 635
PspN4I GGNNCC 1 cut(s) 734
PstNI CAGNNNCTG 1 cut(s) 596
RsaI GTAC 3 cut(s) 84, 198, 278
RsaNI GTAC 3 cut(s) 83, 197, 277
SacI GAGCTC 2 cut(s) 348, 635
SaqAI TTAA 2 cut(s) 240, 713
SatI GCNGC 1 cut(s) 379
Sau3AI GATC 7 cut(s) 4, 42, 70, 139, 451, 505, 738
SduI GDGCHC 3 cut(s) 348, 495, 635
SfaNI GCATC 3 cut(s) 47, 139, 556
Sse9I AATT 4 cut(s) 58, 702, 834, 853
SsiI CCGC 1 cut(s) 402
SspI AATATT 1 cut(s) 204
SspMI CTAG 3 cut(s) 194, 698, 819
SstI GAGCTC 2 cut(s) 348, 635
StyI CCWWGG 3 cut(s) 90, 317, 744
TaaI ACNGT 2 cut(s) 352, 426
TaqI TCGA 5 cut(s) 41, 504, 564, 663, 722
TasI AATT 4 cut(s) 58, 702, 834, 853
TatI WGTACW 3 cut(s) 82, 196, 276
TfiI GAWTC 4 cut(s) 313, 621, 688, 719
Tru1I TTAA 2 cut(s) 240, 713
Tru9I TTAA 2 cut(s) 240, 713
TseFI GTSAC 1 cut(s) 9
TseI GCWGC 1 cut(s) 378
Tsp45I GTSAC 1 cut(s) 9
TspDTI ATGAA 3 cut(s) 164, 654, 671
TspGWI ACGGA 1 cut(s) 123
VspI ATTAAT 1 cut(s) 240
XapI RAATTY 1 cut(s) 834
XbaI TCTAGA 1 cut(s) 697
XceI RCATGY 1 cut(s) 271
XspI CTAG 3 cut(s) 194, 698, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.