Rorug03G0204700

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000188
Physical Location & Seq
Forward (+)
18161971 .. 18167426
5456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0204700.1

Sequence Viewer

Length: 1566 bp
ATGCCTTGCGGTTTATGTCTTAGAGACACGCGGCACTGTGACGTGCTCAAGCTGATGAGGTGCAGTTTGGGGCGTTACAAATGTCTTCGAGATGCCTGCCATAACTCTAATCTGCAGTCATGCGGGAGTTTAATAGATTGTTTTAATGCTCAATCTATTCCAGAGTCAACTAAATGGAGAGAAAATGAGGAGGCTGCTGGTTGTTTTAATCCGGAAGGAGATTTCTCCTATGGAGTATATACTCCAGTTGTCAATCTCACTACAAGAGATAGCATGAGTAAATATTTATACTCACTGTTTTGGGGATTCCAGGACAAACGGGGGTTGCCGGAACTTTTGGCCGGAAAAAGGTGCTTCTGGCCTGTGGTTGGCCGGTGGTGGCTGGAATCGGCCGGAACTTCCCTAAATGGCTTATGTTCGGTGACTTCTAGACGGGTTCTTAAGGTTCTACTTCCGGTTCCTGAATCCCGGGATCGAGGCACTGCTACTGACAAAATTTGGTGGCAATCGGAGGGGCAAGTTCGGACCTTTTTCGGCCGGTTCTTGAGATTCTGCCGGCAGTTCTGGACTCCTGGGATCAAGGTCTTTAACATGTGCGGCGGGGGCAGAAACGGTTTCAAGGTTTTGCCTCTCCGACTCCGGCATCACTTCCATCCCCAATTCTTTGTCCACGACCCCCAAACCCTCTCCGACCTCAAACCCTCGTCCAAACGCACCGTCCCCGCCACGCTCCCCACCATCGACCTTTCTCACATCAACTCGGTTAATCTCCGCCCCGAAATCGTTGAACAGATCAAAGACGCCGCCAGGACATGGGGATTCTTCCAAGTGATCAACCACGGCATACCCGTCTCCTTAGTAGATCAGACGGTGAACGCCGTCAAAGCATTTCACGAGCAGCCCCACGAGGTGAAGGCCAAGTTCTACAAGCGAGAAGAGGGGAAGGGCTTCATGTACGCCAGCAACAATGACTTGTACCGCACAAAGGCGGCCAGCTGGCACGACTCGTTTAACATGTGGACTGGCCCGGAGCCACCGGAGGTGGAGGAGCTTCCGGAGGTATGTAGAAATGAGGTGGTTGCATGGGATTTCCATGCAACCAAGGTGGCCGAGAGTGTGATGGAGTTGCTTTCCGAAGGGTTAGGGTTAGAAGCTGGCAAGTTCAAGGAGCTTACGTTTTCGGAGAAGAGGGCGCTTGTGGGACACTGCTATCCCTACTGTCCTCAGCCCGATCGGACGGATGAGTGGGTGGACGTCAAGGCTGTTCCTGGAGGTCTGATTATTAATGTTGGAGACATGCTTCAGATAATCTCTAATGGGGAGTATAAAAGTGTGCAACATCGTGTGTTGGCAAACTCCTGGAAGGAAGCTCGAATTTCAATTGTGATATTTTACAACCTAGCCAAATGGAGTGAAGATGGATACTGTGGACCTCTCCCAGAACTTTTGTCACCCGAGAAGCCACCAATCTATCGAAACTTCACGGAGAGAGAATTTGTGGAAAATTTTTATAGCAAAGGAATAGATAGCAAGTCTGTGATCGAGAAAATCACAATACATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

521

Amino Acids

59.54

Weight (kDa)

8.22

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 244 - 342 1.7e-21 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 413 - 466 6.4e-13 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1257
AccB7I CCANNNNNTGG 1 cut(s) 813
AccII CGCG 1 cut(s) 31
AccIII TCCGGA 2 cut(s) 211, 1054
AclWI GGATC 2 cut(s) 480, 584
AcoI YGGCCR 6 cut(s) 339, 370, 390, 535, 990, 1107
AcsI RAATTY 4 cut(s) 495, 1374, 1493, 1504
AcuI CTGAAG 1 cut(s) 1286
AcyI GRCGYC 2 cut(s) 801, 1254
AdeI CACNNNGTG 1 cut(s) 910
AfaI GTAC 2 cut(s) 956, 977
AfiI CCNNNNNNNGG 4 cut(s) 348, 368, 813, 985
AflII CTTAAG 1 cut(s) 440
AflIII ACRYGT 2 cut(s) 591, 1014
AgsI TTSAA 4 cut(s) 619, 788, 1165, 1380
AjiI CACGTC 1 cut(s) 43
AjnI CCWGG 5 cut(s) 309, 571, 806, 1267, 1358
AluBI AGCT 6 cut(s) 52, 996, 1051, 1154, 1171, 1370
AluI AGCT 6 cut(s) 52, 996, 1051, 1154, 1171, 1370
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 3 cut(s) 18, 856, 1287
AlwI GGATC 2 cut(s) 480, 584
Ama87I CYCGRG 2 cut(s) 468, 1454
Aor13HI TCCGGA 2 cut(s) 211, 1054
AoxI GGCC 9 cut(s) 339, 359, 370, 390, 535, 915, 990, 1024, 1107
ApeKI GCWGC 2 cut(s) 194, 898
ApoI RAATTY 4 cut(s) 495, 1374, 1493, 1504
ArsI GACNNNNNNTTYG 2 cut(s) 702, 734
AseI ATTAAT 1 cut(s) 1284
Asp700I GAANNNNTTC 1 cut(s) 947
AspLEI GCGC 1 cut(s) 1195
AspS9I GGNCC 3 cut(s) 525, 1025, 1430
AsuC2I CCSGG 3 cut(s) 469, 470, 1028
AsuHPI GGTGA 4 cut(s) 433, 883, 922, 1443
AvaI CYCGRG 2 cut(s) 468, 1454
AvaII GGWCC 2 cut(s) 525, 1430
BauI CACGAG 2 cut(s) 893, 905
BbsI GAAGAC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 48
BbvCI CCTCAGC 1 cut(s) 1224
BbvI GCAGC 2 cut(s) 181, 910
BccI CCATC 4 cut(s) 660, 746, 1114, 1412
BceAI ACGGC 2 cut(s) 856, 863
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 5 cut(s) 311, 573, 808, 1269, 1360
BciVI GTATCC 1 cut(s) 1415
BclI TGATCA 1 cut(s) 831
BcnI CCSGG 3 cut(s) 469, 470, 1028
BcoDI GTCTC 3 cut(s) 18, 856, 1287
BfaI CTAG 2 cut(s) 429, 1400
BfmI CTRYAG 1 cut(s) 113
BfoI RGCGCY 1 cut(s) 1196
BfrI CTTAAG 1 cut(s) 440
BfuI GTATCC 1 cut(s) 1415
BisI GCNGC 6 cut(s) 32, 195, 598, 804, 899, 990
BlsI GCNGC 6 cut(s) 33, 196, 599, 805, 900, 991
Bme1390I CCNGG 8 cut(s) 311, 469, 470, 573, 808, 1028, 1269, 1360
Bme18I GGWCC 2 cut(s) 525, 1430
BmeT110I CYCGRG 2 cut(s) 468, 1454
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 3 cut(s) 525, 1025, 1430
BmiI GGNNCC 2 cut(s) 459, 1032
BmrFI CCNGG 8 cut(s) 311, 469, 470, 573, 808, 1028, 1269, 1360
BmsI GCATC 2 cut(s) 82, 652
BpiI GAAGAC 1 cut(s) 77
BpmI CTGGAG 2 cut(s) 228, 1290
Bpu10I CCTNAGC 1 cut(s) 1224
BpuEI CTTGAG 2 cut(s) 32, 565
BpuMI CCSGG 3 cut(s) 469, 470, 1028
BsaHI GRCGYC 2 cut(s) 801, 1254
BsaJI CCNNGG 4 cut(s) 468, 572, 838, 1101
BsaWI WCCGGW 4 cut(s) 211, 454, 1036, 1054
BsaXI ACNNNNNCTCC 2 cut(s) 1160, 1190
Bsc4I CCNNNNNNNGG 4 cut(s) 348, 368, 813, 985
Bse118I RCCGGY 3 cut(s) 372, 537, 555
Bse1I ACTGG 2 cut(s) 245, 1027
BseAI TCCGGA 2 cut(s) 211, 1054
BseBI CCWGG 5 cut(s) 311, 573, 808, 1269, 1360
BseDI CCNNGG 4 cut(s) 468, 572, 838, 1101
BseGI GGATG 2 cut(s) 652, 1246
BseLI CCNNNNNNNGG 4 cut(s) 348, 368, 813, 985
BseMII CTCAG 1 cut(s) 1238
BseNI ACTGG 2 cut(s) 245, 1027
BseRI GAGGAG 2 cut(s) 203, 1061
BseX3I CGGCCG 2 cut(s) 390, 535
BseXI GCAGC 2 cut(s) 181, 910
BsgI GTGCAG 1 cut(s) 82
Bsh1236I CGCG 1 cut(s) 31
Bsh1285I CGRYCG 3 cut(s) 393, 538, 1234
BshFI GGCC 9 cut(s) 341, 361, 372, 392, 537, 917, 992, 1026, 1109
BsiEI CGRYCG 3 cut(s) 393, 538, 1234
BsiHKAI GWGCWC 1 cut(s) 48
BsiHKCI CYCGRG 2 cut(s) 468, 1454
BslFI GGGAC 2 cut(s) 704, 1215
BslI CCNNNNNNNGG 4 cut(s) 348, 368, 813, 985
BsmAI GTCTC 3 cut(s) 18, 856, 1287
BsmBI CGTCTC 1 cut(s) 856
BsmFI GGGAC 2 cut(s) 704, 1215
BsnI GGCC 9 cut(s) 341, 361, 372, 392, 537, 917, 992, 1026, 1109
BsoBI CYCGRG 2 cut(s) 468, 1454
Bsp1286I GDGCHC 1 cut(s) 48
Bsp13I TCCGGA 2 cut(s) 211, 1054
Bsp143I GATC 7 cut(s) 472, 576, 792, 831, 862, 1231, 1539
BspANI GGCC 9 cut(s) 341, 361, 372, 392, 537, 917, 992, 1026, 1109
BspCNI CTCAG 1 cut(s) 1237
BspEI TCCGGA 2 cut(s) 211, 1054
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 459, 1032
BspMAI CTGCAG 1 cut(s) 117
BspPI GGATC 2 cut(s) 480, 584
BspTI CTTAAG 1 cut(s) 440
BsrFI RCCGGY 3 cut(s) 372, 537, 555
BsrI ACTGG 2 cut(s) 245, 1027
BssAI RCCGGY 3 cut(s) 372, 537, 555
BssECI CCNNGG 4 cut(s) 468, 572, 838, 1101
BssMI GATC 7 cut(s) 472, 576, 792, 831, 862, 1231, 1539
BssNI GRCGYC 2 cut(s) 801, 1254
BssSI CACGAG 2 cut(s) 893, 905
BssT1I CCWWGG 1 cut(s) 1101
Bst2BI CACGAG 2 cut(s) 893, 905
Bst2UI CCWGG 5 cut(s) 311, 573, 808, 1269, 1360
Bst4CI ACNGT 7 cut(s) 38, 297, 614, 718, 871, 1220, 1427
Bst6I CTCTTC 2 cut(s) 930, 1181
BstACI GRCGYC 2 cut(s) 801, 1254
BstAFI CTTAAG 1 cut(s) 440
BstC8I GCNNGC 6 cut(s) 97, 557, 961, 994, 998, 1156
BstDEI CTNAG 3 cut(s) 20, 856, 1224
BstDSI CCRYGG 1 cut(s) 838
BstF5I GGATG 2 cut(s) 652, 1246
BstFNI CGCG 1 cut(s) 31
BstH2I RGCGCY 1 cut(s) 1196
BstHHI GCGC 1 cut(s) 1195
BstKTI GATC 7 cut(s) 475, 579, 795, 834, 865, 1234, 1542
BstMAI GTCTC 3 cut(s) 18, 856, 1287
BstMBI GATC 7 cut(s) 472, 576, 792, 831, 862, 1231, 1539
BstMCI CGRYCG 3 cut(s) 393, 538, 1234
BstMWI GCNNNNNNNGC 2 cut(s) 603, 884
BstNI CCWGG 5 cut(s) 311, 573, 808, 1269, 1360
BstNSI RCATGY 3 cut(s) 595, 1018, 1300
BstSCI CCNGG 8 cut(s) 309, 467, 468, 571, 806, 1026, 1267, 1358
BstSFI CTRYAG 1 cut(s) 113
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 2 cut(s) 181, 910
BstV2I GAAGAC 1 cut(s) 77
BstZI CGGCCG 2 cut(s) 390, 535
BsuI GTATCC 1 cut(s) 1415
BsuRI GGCC 9 cut(s) 341, 361, 372, 392, 537, 917, 992, 1026, 1109
BtgI CCRYGG 1 cut(s) 838
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 2 cut(s) 652, 1246
BtsI GCAGTG 2 cut(s) 480, 1204
BtsIMutI CAGTG 4 cut(s) 34, 293, 480, 1204
Cac8I GCNNGC 6 cut(s) 97, 557, 961, 994, 998, 1156
CfoI GCGC 1 cut(s) 1195
Cfr10I RCCGGY 3 cut(s) 372, 537, 555
Cfr13I GGNCC 3 cut(s) 525, 1025, 1430
Cfr9I CCCGGG 1 cut(s) 468
CseI GACGC 1 cut(s) 809
Csp6I GTAC 2 cut(s) 955, 976
CspCI CAANNNNNGTGG 2 cut(s) 1086, 1121
CviAII CATG 9 cut(s) 120, 274, 592, 813, 952, 1015, 1083, 1094, 1297
CviQI GTAC 2 cut(s) 955, 976
DdeI CTNAG 3 cut(s) 20, 856, 1224
DpnI GATC 7 cut(s) 474, 578, 794, 833, 864, 1233, 1541
DpnII GATC 7 cut(s) 472, 576, 792, 831, 862, 1231, 1539
DraIII CACNNNGTG 1 cut(s) 910
EaeI YGGCCR 6 cut(s) 339, 370, 390, 535, 990, 1107
EagI CGGCCG 2 cut(s) 390, 535
Eam1104I CTCTTC 2 cut(s) 930, 1181
EarI CTCTTC 2 cut(s) 930, 1181
EciI GGCGGA 1 cut(s) 761
EclXI CGGCCG 2 cut(s) 390, 535
Eco130I CCWWGG 1 cut(s) 1101
Eco47I GGWCC 2 cut(s) 525, 1430
Eco52I CGGCCG 2 cut(s) 390, 535
Eco57I CTGAAG 1 cut(s) 1286
Eco88I CYCGRG 2 cut(s) 468, 1454
EcoRII CCWGG 5 cut(s) 309, 571, 806, 1267, 1358
EcoT14I CCWWGG 1 cut(s) 1101
ErhI CCWWGG 1 cut(s) 1101
Esp3I CGTCTC 1 cut(s) 856
FaeI CATG 9 cut(s) 123, 277, 595, 816, 955, 1018, 1086, 1097, 1300
FaqI GGGAC 2 cut(s) 704, 1215
FatI CATG 9 cut(s) 119, 273, 591, 812, 951, 1014, 1082, 1093, 1296
FauI CCCGC 3 cut(s) 116, 593, 730
FbaI TGATCA 1 cut(s) 831
Fnu4HI GCNGC 6 cut(s) 32, 195, 598, 804, 899, 990
FokI GGATG 2 cut(s) 639, 1253
Fsp4HI GCNGC 6 cut(s) 32, 195, 598, 804, 899, 990
FspBI CTAG 2 cut(s) 429, 1400
GlaI GCGC 1 cut(s) 1194
GluI GCNGC 6 cut(s) 32, 195, 598, 804, 899, 990
GsuI CTGGAG 2 cut(s) 228, 1290
HaeII RGCGCY 1 cut(s) 1196
HaeIII GGCC 9 cut(s) 341, 361, 372, 392, 537, 917, 992, 1026, 1109
HgaI GACGC 1 cut(s) 809
HhaI GCGC 1 cut(s) 1195
Hin1I GRCGYC 2 cut(s) 801, 1254
Hin1II CATG 9 cut(s) 123, 277, 595, 816, 955, 1018, 1086, 1097, 1300
Hin6I GCGC 1 cut(s) 1193
HinP1I GCGC 1 cut(s) 1193
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 9 cut(s) 164, 306, 386, 464, 549, 568, 636, 819, 1004
HphI GGTGA 4 cut(s) 433, 883, 922, 1443
Hpy166II GTNNAC 6 cut(s) 168, 670, 874, 1020, 1252, 1430
Hpy8I GTNNAC 6 cut(s) 168, 670, 874, 1020, 1252, 1430
HpyAV CCTTC 5 cut(s) 209, 907, 937, 1130, 1357
HpyCH4III ACNGT 7 cut(s) 38, 297, 614, 718, 871, 1220, 1427
HpyCH4IV ACGT 3 cut(s) 42, 1175, 1254
HpyCH4V TGCA 5 cut(s) 63, 115, 1082, 1097, 1336
HpyF10VI GCNNNNNNNGC 2 cut(s) 603, 884
HpyF3I CTNAG 3 cut(s) 20, 856, 1224
HpySE526I ACGT 3 cut(s) 42, 1175, 1254
Hsp92I GRCGYC 2 cut(s) 801, 1254
Hsp92II CATG 9 cut(s) 123, 277, 595, 816, 955, 1018, 1086, 1097, 1300
HspAI GCGC 1 cut(s) 1193
Kpn2I TCCGGA 2 cut(s) 211, 1054
KroI GCCGGC 1 cut(s) 555
KroNI GCCGGC 1 cut(s) 557
Ksp22I TGATCA 1 cut(s) 831
Kzo9I GATC 7 cut(s) 472, 576, 792, 831, 862, 1231, 1539
LmnI GCTCC 4 cut(s) 735, 1030, 1048, 1168
Lsp1109I GCAGC 2 cut(s) 181, 910
LweI GCATC 2 cut(s) 82, 652
MaeI CTAG 2 cut(s) 429, 1400
MaeII ACGT 3 cut(s) 42, 1175, 1254
MaeIII GTNAC 4 cut(s) 38, 74, 421, 1449
MalI GATC 7 cut(s) 474, 578, 794, 833, 864, 1233, 1541
MboI GATC 7 cut(s) 472, 576, 792, 831, 862, 1231, 1539
MboII GAAGA 5 cut(s) 77, 814, 947, 1198, 1427
MfeI CAATTG 1 cut(s) 1380
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 6 cut(s) 495, 659, 1374, 1380, 1493, 1504
MlyI GAGTC 4 cut(s) 173, 562, 630, 998
MmeI TCCRAC 3 cut(s) 658, 714, 1270
MroI TCCGGA 2 cut(s) 211, 1054
MroNI GCCGGC 1 cut(s) 555
MroXI GAANNNNTTC 1 cut(s) 947
MseI TTAA 8 cut(s) 131, 144, 207, 441, 588, 765, 1011, 1284
MspA1I CMGCKG 1 cut(s) 996
MspCI CTTAAG 1 cut(s) 440
MspR9I CCNGG 8 cut(s) 311, 469, 470, 573, 808, 1028, 1269, 1360
MunI CAATTG 1 cut(s) 1380
MvaI CCWGG 5 cut(s) 311, 573, 808, 1269, 1360
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 603, 884
NaeI GCCGGC 1 cut(s) 557
NciI CCSGG 3 cut(s) 469, 470, 1028
NdeII GATC 7 cut(s) 472, 576, 792, 831, 862, 1231, 1539
NgoMIV GCCGGC 1 cut(s) 555
NlaIII CATG 9 cut(s) 123, 277, 595, 816, 955, 1018, 1086, 1097, 1300
NlaIV GGNNCC 2 cut(s) 459, 1032
NmeAIII GCCGAG 1 cut(s) 1135
NmuCI GTSAC 3 cut(s) 38, 421, 1449
NspI RCATGY 3 cut(s) 595, 1018, 1300
PciI ACATGT 2 cut(s) 591, 1014
PcsI WCGNNNNNNNCGW 1 cut(s) 846
PdiI GCCGGC 1 cut(s) 557
PdmI GAANNNNTTC 1 cut(s) 947
PfeI GAWTC 5 cut(s) 306, 386, 464, 549, 819
PflMI CCANNNNNTGG 1 cut(s) 813
PfoI TCCNGGA 3 cut(s) 309, 1267, 1358
PkrI GCNGC 6 cut(s) 33, 196, 599, 805, 900, 991
Ple19I CGATCG 1 cut(s) 1234
PleI GAGTC 4 cut(s) 172, 562, 630, 998
PpsI GAGTC 4 cut(s) 172, 562, 630, 998
PscI ACATGT 2 cut(s) 591, 1014
PshBI ATTAAT 1 cut(s) 1284
Psp6I CCWGG 5 cut(s) 309, 571, 806, 1267, 1358
PspGI CCWGG 5 cut(s) 309, 571, 806, 1267, 1358
PspN4I GGNNCC 2 cut(s) 459, 1032
PspPI GGNCC 3 cut(s) 525, 1025, 1430
PstI CTGCAG 1 cut(s) 117
PvuI CGATCG 1 cut(s) 1234
PvuII CAGCTG 1 cut(s) 996
RsaI GTAC 2 cut(s) 956, 977
RsaNI GTAC 2 cut(s) 955, 976
SaqAI TTAA 8 cut(s) 131, 144, 207, 441, 588, 765, 1011, 1284
SatI GCNGC 6 cut(s) 32, 195, 598, 804, 899, 990
Sau3AI GATC 7 cut(s) 472, 576, 792, 831, 862, 1231, 1539
Sau96I GGNCC 3 cut(s) 525, 1025, 1430
SchI GAGTC 4 cut(s) 173, 562, 630, 998
ScrFI CCNGG 8 cut(s) 311, 469, 470, 573, 808, 1028, 1269, 1360
SduI GDGCHC 1 cut(s) 48
SfaNI GCATC 2 cut(s) 82, 652
SfcI CTRYAG 1 cut(s) 113
SinI GGWCC 2 cut(s) 525, 1430
SmaI CCCGGG 1 cut(s) 470
SmlI CTYRAG 3 cut(s) 47, 440, 544
SmoI CTYRAG 3 cut(s) 47, 440, 544
Sse9I AATT 6 cut(s) 495, 659, 1374, 1380, 1493, 1504
SspI AATATT 1 cut(s) 284
SspMI CTAG 2 cut(s) 429, 1400
StyD4I CCNGG 8 cut(s) 309, 467, 468, 571, 806, 1026, 1267, 1358
StyI CCWWGG 1 cut(s) 1101
TaaI ACNGT 7 cut(s) 38, 297, 614, 718, 871, 1220, 1427
TaiI ACGT 3 cut(s) 45, 1178, 1257
TaqI TCGA 6 cut(s) 88, 475, 741, 1372, 1474, 1542
TasI AATT 6 cut(s) 495, 659, 1374, 1380, 1493, 1504
TauI GCSGC 4 cut(s) 34, 600, 806, 992
TfiI GAWTC 5 cut(s) 306, 386, 464, 549, 819
Tru1I TTAA 8 cut(s) 131, 144, 207, 441, 588, 765, 1011, 1284
Tru9I TTAA 8 cut(s) 131, 144, 207, 441, 588, 765, 1011, 1284
TscAI CASTG 4 cut(s) 41, 300, 487, 1211
TseFI GTSAC 3 cut(s) 38, 421, 1449
TseI GCWGC 2 cut(s) 194, 898
Tsp45I GTSAC 3 cut(s) 38, 421, 1449
TspDTI ATGAA 1 cut(s) 940
TspGWI ACGGA 2 cut(s) 1253, 1499
TspMI CCCGGG 1 cut(s) 468
TspRI CASTG 4 cut(s) 41, 300, 487, 1211
Van91I CCANNNNNTGG 1 cut(s) 813
Vha464I CTTAAG 1 cut(s) 440
VpaK11BI GGWCC 2 cut(s) 525, 1430
VspI ATTAAT 1 cut(s) 1284
XapI RAATTY 4 cut(s) 495, 1374, 1493, 1504
XbaI TCTAGA 1 cut(s) 428
XceI RCATGY 3 cut(s) 595, 1018, 1300
XmaI CCCGGG 1 cut(s) 468
XmnI GAANNNNTTC 1 cut(s) 947
XspI CTAG 2 cut(s) 429, 1400
ZraI GACGTC 1 cut(s) 1255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.