Rmu_sc0002180.1_g000032

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002180.1
OG0000188
Physical Location & Seq
Forward (+)
115486 .. 116769
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002180.1_g000032.1.cds

Sequence Viewer

Length: 1284 bp
atggaagattatggcagtagaaatattgatgttgaagcattggaacagagcatgaaaggaaagcttcgcagtgattcacccttgtctgctaagtgttgcattttcagagttccggaagtactccggagacataaaccagaggcatatgcaccagatattgtctcaatcggaccctttcaccgtaacagcagactttttgaagccatgaaagacgtgaaacagtggtatttaaattctctactcttacgaaatggtataagtctaaaagaattgatccaaggtattgataatattactgtgtttgagaaacgcgcccgtgattattatgcagaatcaattgatcttaaccagaataaattcatagaaatgatgataattgatggctgcttcttattagaactatttcagagaaactcctatatgtacccaagttcagatatggttaatgatcccgtatccaacatgagttgcatggtccagtatctttgccatgatcttctgctactagaaaatcagctaccttggtttgttctcgattctctatataacctcatctgctgcaaacaagtccccctcactaggcttgtgctcaacttcttcagcagactatcgtcactggctcgtatttgcaagggttatcccaaacacagtcataatgatgaaattctacacatacttgatctggtaagaagtgctattgttgttccattccacgaatttgtatcaaacgaaaaagagagtgcactgccccatgcaactgctctcgtggaggcaggcattgaattcagaagaagcaaagtggatggcttattgaatattggtttcaaaaatggagttctcacaattccaaagcttgcaatttcagagatgactgaacctttgttcaggaacctcatagcctttgagcagtgctatcaccatcgccaacatatgataacttcttatgcccttttaatggataacctcattgcttcctgcaaggatgttgtttttctttgtgacaaagaaataatccataattggttgaatgctgaagatgcttcccagttgttcagtgacctttatagtgacacattaatagttgatttttgctacggcgggctgtgtggtgaagtgaataaatatcagaaagtcagatggaacaagtggagagcaagattgaagcgtgattattgttctaacccatggaaaattacttctttggttgcagctttcatcctcctggttctcaccctattgcagacaacatataccattcagcaatactattctcctcctaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

427

Amino Acids

49.44

Weight (kDa)

6.85

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 312
AccIII TCCGGA 2 cut(s) 112, 123
AciI CCGC 1 cut(s) 1098
AclWI GGATC 2 cut(s) 268, 443
AcsI RAATTY 5 cut(s) 232, 356, 663, 716, 782
AcuI CTGAAG 2 cut(s) 583, 1053
AfaI GTAC 2 cut(s) 120, 425
AfiI CCNNNNNNNGG 2 cut(s) 579, 955
AgsI TTSAA 7 cut(s) 35, 200, 782, 814, 826, 1027, 1162
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 1 cut(s) 1221
AluBI AGCT 4 cut(s) 64, 517, 853, 1211
AluI AGCT 4 cut(s) 64, 517, 853, 1211
Alw21I GWGCWC 2 cut(s) 591, 745
Alw26I GTCTC 2 cut(s) 121, 166
Alw44I GTGCAC 1 cut(s) 741
AlwI GGATC 2 cut(s) 268, 443
Aor13HI TCCGGA 2 cut(s) 112, 123
ApaLI GTGCAC 1 cut(s) 741
ApeKI GCWGC 3 cut(s) 384, 558, 1208
ApoI RAATTY 5 cut(s) 232, 356, 663, 716, 782
ArsI GACNNNNNNTTYG 2 cut(s) 862, 894
AseI ATTAAT 1 cut(s) 1076
Asp700I GAANNNNTTC 2 cut(s) 356, 402
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 2 cut(s) 170, 475
AsuHPI GGTGA 5 cut(s) 69, 170, 908, 1121, 1222
AvaII GGWCC 2 cut(s) 170, 475
BaeGI GKGCMC 1 cut(s) 745
BauI CACGAG 1 cut(s) 764
Bbv12I GWGCWC 2 cut(s) 591, 745
BbvI GCAGC 3 cut(s) 371, 545, 1220
BccI CCATC 4 cut(s) 374, 797, 927, 1131
BceAI ACGGC 1 cut(s) 1111
BciT130I CCWGG 1 cut(s) 1223
BciVI GTATCC 1 cut(s) 466
BcoDI GTCTC 2 cut(s) 121, 166
BfaI CTAG 2 cut(s) 506, 579
BfuI GTATCC 1 cut(s) 466
BisI GCNGC 3 cut(s) 385, 559, 1209
BlsI GCNGC 3 cut(s) 386, 560, 1210
BmcAI AGTACT 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 1223
Bme18I GGWCC 2 cut(s) 170, 475
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 170, 475
BmiI GGNNCC 2 cut(s) 172, 890
BmrFI CCNGG 1 cut(s) 1223
BmrI ACTGGG 1 cut(s) 1039
BmsI GCATC 1 cut(s) 1027
BmuI ACTGGG 1 cut(s) 1039
BoxI GACNNNNGTC 1 cut(s) 610
BsaJI CCNNGG 3 cut(s) 277, 521, 1184
BsaWI WCCGGW 2 cut(s) 112, 123
Bsc4I CCNNNNNNNGG 2 cut(s) 579, 955
Bse1I ACTGG 3 cut(s) 478, 621, 1045
Bse3DI GCAATG 1 cut(s) 966
BseAI TCCGGA 2 cut(s) 112, 123
BseBI CCWGG 1 cut(s) 1223
BseDI CCNNGG 3 cut(s) 277, 521, 1184
BseGI GGATG 3 cut(s) 808, 988, 1215
BseLI CCNNNNNNNGG 2 cut(s) 579, 955
BseMI GCAATG 1 cut(s) 966
BseNI ACTGG 3 cut(s) 478, 621, 1045
BseRI GAGGAG 1 cut(s) 1263
BseSI GKGCMC 1 cut(s) 745
BseXI GCAGC 3 cut(s) 371, 545, 1220
Bsh1236I CGCG 1 cut(s) 312
BsiHKAI GWGCWC 2 cut(s) 591, 745
BsiSI CCGG 2 cut(s) 113, 124
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 2 cut(s) 579, 955
BsmAI GTCTC 2 cut(s) 121, 166
BsmFI GGGAC 1 cut(s) 554
BsmI GAATGC 1 cut(s) 1033
Bsp1286I GDGCHC 2 cut(s) 591, 745
Bsp13I TCCGGA 2 cut(s) 112, 123
Bsp143I GATC 5 cut(s) 273, 340, 448, 493, 679
Bsp19I CCATGG 1 cut(s) 1184
BspACI CCGC 1 cut(s) 1098
BspEI TCCGGA 2 cut(s) 112, 123
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 2 cut(s) 172, 890
BspPI GGATC 2 cut(s) 268, 443
BsrDI GCAATG 1 cut(s) 966
BsrI ACTGG 3 cut(s) 478, 621, 1045
BssECI CCNNGG 3 cut(s) 277, 521, 1184
BssMI GATC 5 cut(s) 273, 340, 448, 493, 679
BssSI CACGAG 1 cut(s) 764
BssT1I CCWWGG 3 cut(s) 277, 521, 1184
Bst2BI CACGAG 1 cut(s) 764
Bst2UI CCWGG 1 cut(s) 1223
Bst4CI ACNGT 4 cut(s) 182, 222, 298, 650
BstC8I GCNNGC 3 cut(s) 775, 855, 1100
BstDEI CTNAG 2 cut(s) 90, 1278
BstDSI CCRYGG 1 cut(s) 1184
BstF5I GGATG 3 cut(s) 808, 988, 1215
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 5 cut(s) 276, 343, 451, 496, 682
BstMAI GTCTC 2 cut(s) 121, 166
BstMBI GATC 5 cut(s) 273, 340, 448, 493, 679
BstMWI GCNNNNNNNGC 1 cut(s) 1037
BstNI CCWGG 1 cut(s) 1223
BstPAI GACNNNNGTC 1 cut(s) 610
BstSCI CCNGG 1 cut(s) 1221
BstSLI GKGCMC 1 cut(s) 745
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 3 cut(s) 371, 545, 1220
BsuI GTATCC 1 cut(s) 466
BtgI CCRYGG 1 cut(s) 1184
BtgZI GCGATG 1 cut(s) 905
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 3 cut(s) 808, 988, 1215
BtsI GCAGTG 3 cut(s) 76, 743, 914
BtsIMutI CAGTG 6 cut(s) 76, 227, 614, 743, 914, 1060
Cac8I GCNNGC 3 cut(s) 775, 855, 1100
CfoI GCGC 1 cut(s) 314
Cfr13I GGNCC 2 cut(s) 170, 475
Csp6I GTAC 2 cut(s) 119, 424
CviAII CATG 7 cut(s) 52, 205, 463, 472, 491, 752, 1185
CviQI GTAC 2 cut(s) 119, 424
DdeI CTNAG 2 cut(s) 90, 1278
DpnI GATC 5 cut(s) 275, 342, 450, 495, 681
DpnII GATC 5 cut(s) 273, 340, 448, 493, 679
DraI TTTAAA 1 cut(s) 231
Eco130I CCWWGG 3 cut(s) 277, 521, 1184
Eco47I GGWCC 2 cut(s) 170, 475
Eco57I CTGAAG 2 cut(s) 583, 1053
EcoRI GAATTC 1 cut(s) 782
EcoRII CCWGG 1 cut(s) 1221
EcoT14I CCWWGG 3 cut(s) 277, 521, 1184
ErhI CCWWGG 3 cut(s) 277, 521, 1184
FaeI CATG 7 cut(s) 55, 208, 466, 475, 494, 755, 1188
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FaqI GGGAC 1 cut(s) 554
FatI CATG 7 cut(s) 51, 204, 462, 471, 490, 751, 1184
FauI CCCGC 1 cut(s) 1091
FauNDI CATATG 2 cut(s) 145, 930
Fnu4HI GCNGC 3 cut(s) 385, 559, 1209
FokI GGATG 3 cut(s) 815, 995, 1202
Fsp4HI GCNGC 3 cut(s) 385, 559, 1209
FspBI CTAG 2 cut(s) 506, 579
GlaI GCGC 1 cut(s) 313
GluI GCNGC 3 cut(s) 385, 559, 1209
HapII CCGG 2 cut(s) 113, 124
HhaI GCGC 1 cut(s) 314
Hin1II CATG 7 cut(s) 55, 208, 466, 475, 494, 755, 1188
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HindIII AAGCTT 2 cut(s) 62, 851
HinfI GANTC 3 cut(s) 74, 332, 536
HpaII CCGG 2 cut(s) 113, 124
HphI GGTGA 5 cut(s) 69, 170, 908, 1121, 1222
Hpy166II GTNNAC 1 cut(s) 743
Hpy188I TCNGA 8 cut(s) 107, 170, 408, 436, 788, 865, 1128, 1136
Hpy188III TCNNGA 4 cut(s) 113, 124, 533, 886
Hpy8I GTNNAC 1 cut(s) 743
HpyCH4III ACNGT 4 cut(s) 182, 222, 298, 650
HpyCH4IV ACGT 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 1037
HpyF3I CTNAG 2 cut(s) 90, 1278
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 7 cut(s) 55, 208, 466, 475, 494, 755, 1188
HspAI GCGC 1 cut(s) 312
Kpn2I TCCGGA 2 cut(s) 112, 123
Kzo9I GATC 5 cut(s) 273, 340, 448, 493, 679
Lsp1109I GCAGC 3 cut(s) 371, 545, 1220
LweI GCATC 1 cut(s) 1027
MaeI CTAG 2 cut(s) 506, 579
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 5 cut(s) 182, 612, 998, 1055, 1067
MalI GATC 5 cut(s) 275, 342, 450, 495, 681
MboI GATC 5 cut(s) 273, 340, 448, 493, 679
MboII GAAGA 5 cut(s) 17, 488, 589, 801, 1046
MfeI CAATTG 1 cut(s) 336
MhlI GDGCHC 2 cut(s) 591, 745
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 8 cut(s) 133, 560, 584, 763, 902, 974, 1229, 1284
MroI TCCGGA 2 cut(s) 112, 123
MroXI GAANNNNTTC 2 cut(s) 356, 402
MseI TTAA 5 cut(s) 230, 345, 444, 953, 1076
MslI CAYNNNNRTG 2 cut(s) 365, 657
MspI CCGG 2 cut(s) 113, 124
MspR9I CCNGG 1 cut(s) 1223
MunI CAATTG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 1033
MvaI CCWGG 1 cut(s) 1223
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 1037
NcoI CCATGG 1 cut(s) 1184
NdeI CATATG 2 cut(s) 145, 930
NdeII GATC 5 cut(s) 273, 340, 448, 493, 679
NlaIII CATG 7 cut(s) 55, 208, 466, 475, 494, 755, 1188
NlaIV GGNNCC 2 cut(s) 172, 890
NmuCI GTSAC 4 cut(s) 612, 998, 1055, 1067
PctI GAATGC 1 cut(s) 1033
PdmI GAANNNNTTC 2 cut(s) 356, 402
PfeI GAWTC 3 cut(s) 74, 332, 536
PkrI GCNGC 3 cut(s) 386, 560, 1210
PshAI GACNNNNGTC 1 cut(s) 610
PshBI ATTAAT 1 cut(s) 1076
Psp6I CCWGG 1 cut(s) 1221
PspGI CCWGG 1 cut(s) 1221
PspN4I GGNNCC 2 cut(s) 172, 890
PspPI GGNCC 2 cut(s) 170, 475
RsaI GTAC 2 cut(s) 120, 425
RsaNI GTAC 2 cut(s) 119, 424
RseI CAYNNNNRTG 2 cut(s) 365, 657
SaqAI TTAA 5 cut(s) 230, 345, 444, 953, 1076
SatI GCNGC 3 cut(s) 385, 559, 1209
Sau3AI GATC 5 cut(s) 273, 340, 448, 493, 679
Sau96I GGNCC 2 cut(s) 170, 475
ScaI AGTACT 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 1223
SduI GDGCHC 2 cut(s) 591, 745
SfaNI GCATC 1 cut(s) 1027
SinI GGWCC 2 cut(s) 170, 475
SmiI ATTTAAAT 1 cut(s) 231
SmiMI CAYNNNNRTG 2 cut(s) 365, 657
SsiI CCGC 1 cut(s) 1098
SspI AATATT 3 cut(s) 25, 292, 817
SspMI CTAG 2 cut(s) 506, 579
StyD4I CCNGG 1 cut(s) 1221
StyI CCWWGG 3 cut(s) 277, 521, 1184
SwaI ATTTAAAT 1 cut(s) 231
TaaI ACNGT 4 cut(s) 182, 222, 298, 650
TaiI ACGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 534
TatI WGTACW 1 cut(s) 118
TfiI GAWTC 3 cut(s) 74, 332, 536
Tru1I TTAA 5 cut(s) 230, 345, 444, 953, 1076
Tru9I TTAA 5 cut(s) 230, 345, 444, 953, 1076
TscAI CASTG 6 cut(s) 76, 227, 621, 750, 914, 1060
TseFI GTSAC 4 cut(s) 612, 998, 1055, 1067
TseI GCWGC 3 cut(s) 384, 558, 1208
Tsp45I GTSAC 4 cut(s) 612, 998, 1055, 1067
TspDTI ATGAA 5 cut(s) 68, 221, 349, 675, 1204
TspRI CASTG 6 cut(s) 76, 227, 621, 750, 914, 1060
VneI GTGCAC 1 cut(s) 741
VpaK11BI GGWCC 2 cut(s) 170, 475
VspI ATTAAT 1 cut(s) 1076
XapI RAATTY 5 cut(s) 232, 356, 663, 716, 782
XmnI GAANNNNTTC 2 cut(s) 356, 402
XspI CTAG 2 cut(s) 506, 579
ZrmI AGTACT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.