Rmu_sc0002280.1_g000009

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002280.1
OG0000188
Physical Location & Seq
Reverse (-)
34122 .. 35123
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002280.1_g000009.1.cds

Sequence Viewer

Length: 1002 bp
atgatgatagttgatggttgctttctactagaactattaaagaagttcttctgtgagggatataagcgttgtcataagaaaatttttgttccagctgaagtactacatattgagaatgatcctatattcaacatggattgcatgcttcaatacctctgccatgaccttatgctgctagaaaatcagctgccttggtttgttcttgagattttatatcgtctgactgttgaagaatacatctactatccatcacttagcacaatggtgctcctcacctttagctcacaaggatcactactgcacaatgtcgagtcctatcttagtcacaatggtcttgatgatggtgatgatgaggatgaggatgaggatgatgctatcttgcacatacttgatctgataagaagtacattagtttttcgatttagaaaggtgaagtctttgccctgcttatcacaagtaaagttgcctccagccactactctctcggaggcaggtgttgaattcagaagggcttgtatggaaggcatgatgaacatagatttcaaagacggcgtgtttacaattccacaactgccaattgcagagatgacagagccactgttgaggaacataattgccctcgagcaatgttgtcatggacgatcacataaaataacttcctatgttattttgatgcatagcctcattgcttccagcaaggatatagattttctttgtgagaaagaaatattcctcaactggttcagctctgaaaatgcttacaagatcttcaacaagctttacgatgatacgttcctcaagaacttctactatggggaactatgtgctgaagtgaacaactattacaacgtttcgtggaacaggtggctagaaaaattgaaacgtgatcacttatctaacccatggaagattacttctttggttgcagcctttattcttctagctctcaccttattgcagaccacatataccattcagcaatactattctcctcgtcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

38.98

Weight (kDa)

5.16

Isoelectric Point (pI)

55.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 482
Acc36I ACCTGC 1 cut(s) 482
AclI AACGTT 1 cut(s) 849
AclWI GGATC 2 cut(s) 113, 298
AcsI RAATTY 2 cut(s) 81, 500
AcuI CTGAAG 2 cut(s) 117, 849
AfaI GTAC 2 cut(s) 102, 406
AgsI TTSAA 7 cut(s) 130, 149, 230, 500, 544, 772, 880
AleI CACNNNNGTG 1 cut(s) 263
AluBI AGCT 6 cut(s) 95, 187, 282, 747, 778, 944
AluI AGCT 6 cut(s) 95, 187, 282, 747, 778, 944
Alw21I GWGCWC 1 cut(s) 270
AlwI GGATC 2 cut(s) 113, 298
Ama87I CYCGRG 1 cut(s) 620
ApeKI GCWGC 3 cut(s) 172, 187, 926
ApoI RAATTY 2 cut(s) 81, 500
Asp700I GAANNNNTTC 1 cut(s) 47
AsuHPI GGTGA 4 cut(s) 265, 356, 442, 940
AvaI CYCGRG 1 cut(s) 620
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 3 cut(s) 159, 174, 938
BccI CCATC 3 cut(s) 8, 256, 335
BceAI ACGGC 1 cut(s) 565
BclI TGATCA 1 cut(s) 886
BfaI CTAG 4 cut(s) 29, 176, 869, 941
BfuAI ACCTGC 1 cut(s) 482
BglII AGATCT 1 cut(s) 765
BisI GCNGC 3 cut(s) 173, 188, 927
BlsI GCNGC 3 cut(s) 174, 189, 928
BmcAI AGTACT 1 cut(s) 102
BmeT110I CYCGRG 1 cut(s) 620
BmsI GCATC 2 cut(s) 361, 663
BpmI CTGGAG 1 cut(s) 453
BpuEI CTTGAG 2 cut(s) 224, 782
BsaJI CCNNGG 2 cut(s) 191, 902
Bse1I ACTGG 1 cut(s) 743
Bse3DI GCAATG 2 cut(s) 632, 684
BseDI CCNNGG 2 cut(s) 191, 902
BseGI GGATG 3 cut(s) 361, 367, 373
BseMI GCAATG 2 cut(s) 632, 684
BseNI ACTGG 1 cut(s) 743
BseRI GAGGAG 2 cut(s) 260, 981
BseXI GCAGC 3 cut(s) 159, 174, 938
BsgI GTGCAG 1 cut(s) 284
BsiHKAI GWGCWC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 620
BsoBI CYCGRG 1 cut(s) 620
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 6 cut(s) 118, 290, 391, 641, 765, 886
Bsp19I CCATGG 1 cut(s) 902
BspMI ACCTGC 1 cut(s) 482
BspPI GGATC 2 cut(s) 113, 298
BsrDI GCAATG 2 cut(s) 632, 684
BsrI ACTGG 1 cut(s) 743
BssECI CCNNGG 2 cut(s) 191, 902
BssMI GATC 6 cut(s) 118, 290, 391, 641, 765, 886
BssT1I CCWWGG 2 cut(s) 191, 902
Bst4CI ACNGT 2 cut(s) 226, 600
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 254, 320
BstDSI CCRYGG 1 cut(s) 902
BstF5I GGATG 3 cut(s) 361, 367, 373
BstKTI GATC 6 cut(s) 121, 293, 394, 644, 768, 889
BstMBI GATC 6 cut(s) 118, 290, 391, 641, 765, 886
BstNSI RCATGY 1 cut(s) 145
BstV1I GCAGC 3 cut(s) 159, 174, 938
BstX2I RGATCY 1 cut(s) 765
BstYI RGATCY 1 cut(s) 765
BtgI CCRYGG 1 cut(s) 902
BtsCI GGATG 3 cut(s) 361, 367, 373
BtsIMutI CAGTG 1 cut(s) 596
BveI ACCTGC 1 cut(s) 482
Cac8I GCNNGC 1 cut(s) 143
Csp6I GTAC 2 cut(s) 101, 405
CviAII CATG 6 cut(s) 133, 142, 161, 526, 635, 903
CviQI GTAC 2 cut(s) 101, 405
DdeI CTNAG 2 cut(s) 254, 320
DpnI GATC 6 cut(s) 120, 292, 393, 643, 767, 888
DpnII GATC 6 cut(s) 118, 290, 391, 641, 765, 886
Eco130I CCWWGG 2 cut(s) 191, 902
Eco57I CTGAAG 2 cut(s) 117, 849
Eco88I CYCGRG 1 cut(s) 620
EcoRI GAATTC 1 cut(s) 500
EcoT14I CCWWGG 2 cut(s) 191, 902
EcoT22I ATGCAT 1 cut(s) 678
ErhI CCWWGG 2 cut(s) 191, 902
FaeI CATG 6 cut(s) 136, 145, 164, 529, 638, 906
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FatI CATG 6 cut(s) 132, 141, 160, 525, 634, 902
FbaI TGATCA 1 cut(s) 886
Fnu4HI GCNGC 3 cut(s) 173, 188, 927
FokI GGATG 3 cut(s) 368, 374, 380
Fsp4HI GCNGC 3 cut(s) 173, 188, 927
FspBI CTAG 4 cut(s) 29, 176, 869, 941
GluI GCNGC 3 cut(s) 173, 188, 927
GsuI CTGGAG 1 cut(s) 453
Hin1II CATG 6 cut(s) 136, 145, 164, 529, 638, 906
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 1 cut(s) 311
HphI GGTGA 4 cut(s) 265, 356, 442, 940
Hpy166II GTNNAC 2 cut(s) 558, 835
Hpy188I TCNGA 5 cut(s) 222, 396, 487, 506, 751
Hpy188III TCNNGA 3 cut(s) 203, 335, 799
Hpy8I GTNNAC 2 cut(s) 558, 835
HpyAV CCTTC 2 cut(s) 501, 515
HpyCH4III ACNGT 2 cut(s) 226, 600
HpyCH4IV ACGT 3 cut(s) 791, 849, 883
HpyCH4V TGCA 7 cut(s) 141, 301, 382, 581, 676, 926, 958
HpyF3I CTNAG 2 cut(s) 254, 320
HpySE526I ACGT 3 cut(s) 791, 849, 883
Hsp92II CATG 6 cut(s) 136, 145, 164, 529, 638, 906
Ksp22I TGATCA 1 cut(s) 886
Kzo9I GATC 6 cut(s) 118, 290, 391, 641, 765, 886
LmnI GCTCC 1 cut(s) 273
LpnPI CCDG 7 cut(s) 105, 457, 477, 483, 706, 724, 847
Lsp1109I GCAGC 3 cut(s) 159, 174, 938
LweI GCATC 2 cut(s) 361, 663
MaeI CTAG 4 cut(s) 29, 176, 869, 941
MaeII ACGT 3 cut(s) 791, 849, 883
MaeIII GTNAC 1 cut(s) 323
MalI GATC 6 cut(s) 120, 292, 393, 643, 767, 888
MboI GATC 6 cut(s) 118, 290, 391, 641, 765, 886
MboII GAAGA 5 cut(s) 40, 242, 760, 919, 929
MfeI CAATTG 1 cut(s) 576
MflI RGATCY 1 cut(s) 765
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 6 cut(s) 81, 500, 561, 576, 612, 875
MlyI GAGTC 1 cut(s) 320
Mph1103I ATGCAT 1 cut(s) 678
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 263
MspA1I CMGCKG 2 cut(s) 95, 187
MunI CAATTG 1 cut(s) 576
NcoI CCATGG 1 cut(s) 902
NdeII GATC 6 cut(s) 118, 290, 391, 641, 765, 886
NlaIII CATG 6 cut(s) 136, 145, 164, 529, 638, 906
NmuCI GTSAC 1 cut(s) 323
NsiI ATGCAT 1 cut(s) 678
NspI RCATGY 1 cut(s) 145
OliI CACNNNNGTG 1 cut(s) 263
PaeI GCATGC 1 cut(s) 145
PaeR7I CTCGAG 1 cut(s) 620
PaqCI CACCTGC 1 cut(s) 482
PdmI GAANNNNTTC 1 cut(s) 47
PkrI GCNGC 3 cut(s) 174, 189, 928
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
Psp1406I AACGTT 1 cut(s) 849
PspXI VCTCGAGB 1 cut(s) 620
PsrI GAACNNNNNNTAC 2 cut(s) 827, 859
PsuI RGATCY 1 cut(s) 765
PvuII CAGCTG 2 cut(s) 95, 187
RsaI GTAC 2 cut(s) 102, 406
RsaNI GTAC 2 cut(s) 101, 405
RseI CAYNNNNRTG 1 cut(s) 263
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 3 cut(s) 173, 188, 927
Sau3AI GATC 6 cut(s) 118, 290, 391, 641, 765, 886
ScaI AGTACT 1 cut(s) 102
SchI GAGTC 1 cut(s) 320
SduI GDGCHC 1 cut(s) 270
SfaNI GCATC 2 cut(s) 361, 663
Sfr274I CTCGAG 1 cut(s) 620
SlaI CTCGAG 1 cut(s) 620
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 3 cut(s) 203, 620, 797
SmoI CTYRAG 3 cut(s) 203, 620, 797
SphI GCATGC 1 cut(s) 145
Sse9I AATT 6 cut(s) 81, 500, 561, 576, 612, 875
SspI AATATT 1 cut(s) 729
SspMI CTAG 4 cut(s) 29, 176, 869, 941
StyI CCWWGG 2 cut(s) 191, 902
TaaI ACNGT 2 cut(s) 226, 600
TaiI ACGT 3 cut(s) 794, 852, 886
TaqI TCGA 3 cut(s) 309, 418, 621
TasI AATT 6 cut(s) 81, 500, 561, 576, 612, 875
TatI WGTACW 2 cut(s) 100, 404
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 1 cut(s) 603
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 3 cut(s) 172, 187, 926
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 545
TspRI CASTG 1 cut(s) 603
XapI RAATTY 2 cut(s) 81, 500
XceI RCATGY 1 cut(s) 145
XhoI CTCGAG 1 cut(s) 620
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 4 cut(s) 29, 176, 869, 941
ZrmI AGTACT 1 cut(s) 102
Zsp2I ATGCAT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.