Rroxscaffold_3G00268780

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000188
Physical Location & Seq
Forward (+)
61845879 .. 61846659
781 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00268780.1

Sequence Viewer

Length: 621 bp
ATGGAGCTTACTTTGGAATCAGTCATGGCAAACTACATAGAAAGATGGTGTGATGAGCATGATAGTTTGATTGTTGTAGAAGATGATAACAAGAGCACAGAAATTGTTGAAGCATTGGAAAAGACCATGAGCGCTAAGCTTCGCAGTGATTCACCCTTGTCTGCTAAGTGCGGCATCTTCAGAGTTCCCAAGGTGCTGCGAAGACATAAACCAGAGGCATATCAACCTGATGTTGTTTCAATTGGACCTTTTCACAGAGGTGGAAAACAATTTCAGCTCATGGAAGATGTAAAACAACGAACTGCAATAGTTGTCCCAAGCAAAGTATTTTGGTCTAATAACAATAGATCAGAGTCAAAATTGCCTCCGTCGAATATTCTCTCAGAAGCTGGCATTGAATTTGGAAGGGGTGCTGCTGAAAGCATAATGAGCATAGATTTCAGAGATGGCACTTTTATGATTCCAGAACTAGCAATTGGAGAGTTGACTGAACCATTGTTCCGGAACCTCATTGCCTTTGAACAATGTTATCATGAATGCTCGCATAAGATCACATCTTATGCCCTGTTAATGAATTACCTCATCAGCTCCGGCAAGGATATGGATTTCCTTTGCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.34

Weight (kDa)

5.21

Isoelectric Point (pI)

63.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 59 - 102 8.7e-13 Plant protein of unknown function
DUF247 PF03140 116 - 205 7.9e-22 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 501
AciI CCGC 1 cut(s) 171
AcsI RAATTY 1 cut(s) 398
AcuI CTGAAG 1 cut(s) 163
AfeI AGCGCT 1 cut(s) 133
AgsI TTSAA 4 cut(s) 110, 240, 398, 521
AjuI GAANNNNNNNTTGG 2 cut(s) 459, 491
AleI CACNNNNGTG 1 cut(s) 258
AloI GAACNNNNNNTCC 2 cut(s) 483, 515
AluBI AGCT 5 cut(s) 7, 139, 277, 389, 588
AluI AGCT 5 cut(s) 7, 139, 277, 389, 588
Alw21I GWGCWC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 389
Aor13HI TCCGGA 1 cut(s) 501
Aor51HI AGCGCT 1 cut(s) 133
ApeKI GCWGC 2 cut(s) 196, 413
ApoI RAATTY 1 cut(s) 398
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 144
AvaII GGWCC 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 183, 400
BccI CCATC 2 cut(s) 39, 440
BfaI CTAG 1 cut(s) 470
BfoI RGCGCY 1 cut(s) 135
BisI GCNGC 3 cut(s) 172, 197, 414
BlpI GCTNAGC 1 cut(s) 135
BlsI GCNGC 3 cut(s) 173, 198, 415
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 506
BmsI GCATC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 208
Bpu1102I GCTNAGC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 501
Bse3DI GCAATG 1 cut(s) 510
BseAI TCCGGA 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 189
BseMI GCAATG 1 cut(s) 510
BseMII CTCAG 1 cut(s) 396
BseXI GCAGC 2 cut(s) 183, 400
BsiHKAI GWGCWC 1 cut(s) 98
BsiSI CCGG 2 cut(s) 502, 591
BslFI GGGAC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 542
Bsp1286I GDGCHC 1 cut(s) 98
Bsp13I TCCGGA 1 cut(s) 501
Bsp143I GATC 2 cut(s) 347, 549
Bsp1720I GCTNAGC 1 cut(s) 135
BspACI CCGC 1 cut(s) 171
BspCNI CTCAG 1 cut(s) 395
BspEI TCCGGA 1 cut(s) 501
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 1 cut(s) 506
BsrDI GCAATG 1 cut(s) 510
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 2 cut(s) 347, 549
BssT1I CCWWGG 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 391, 542
BstDEI CTNAG 3 cut(s) 135, 165, 382
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 2 cut(s) 350, 552
BstMBI GATC 2 cut(s) 347, 549
BstMWI GCNNNNNNNGC 1 cut(s) 429
BstV1I GCAGC 2 cut(s) 183, 400
BstV2I GAAGAC 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 2 cut(s) 391, 542
CaiI CAGNNNCTG 1 cut(s) 389
CciI TCATGA 1 cut(s) 532
CfoI GCGC 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 245
CviAII CATG 5 cut(s) 25, 59, 127, 280, 533
CviJI RGCY 5 cut(s) 7, 139, 277, 389, 588
CviKI_1 RGCY 5 cut(s) 7, 139, 277, 389, 588
DdeI CTNAG 3 cut(s) 135, 165, 382
DpnI GATC 2 cut(s) 349, 551
DpnII GATC 2 cut(s) 347, 549
Eco130I CCWWGG 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 245
Eco47III AGCGCT 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 5 cut(s) 28, 62, 130, 283, 536
FaqI GGGAC 1 cut(s) 299
FatI CATG 5 cut(s) 24, 58, 126, 279, 532
Fnu4HI GCNGC 3 cut(s) 172, 197, 414
Fsp4HI GCNGC 3 cut(s) 172, 197, 414
FspBI CTAG 1 cut(s) 470
GlaI GCGC 1 cut(s) 133
GluI GCNGC 3 cut(s) 172, 197, 414
HaeII RGCGCY 1 cut(s) 135
HapII CCGG 2 cut(s) 502, 591
HhaI GCGC 1 cut(s) 134
Hin1II CATG 5 cut(s) 28, 62, 130, 283, 536
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 4 cut(s) 17, 149, 353, 460
HpaII CCGG 2 cut(s) 502, 591
HphI GGTGA 1 cut(s) 144
Hpy166II GTNNAC 1 cut(s) 486
Hpy188I TCNGA 4 cut(s) 182, 352, 385, 443
Hpy188III TCNNGA 3 cut(s) 464, 502, 533
Hpy8I GTNNAC 1 cut(s) 486
Hpy99I CGWCG 1 cut(s) 373
HpyAV CCTTC 1 cut(s) 399
HpyCH4V TGCA 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 429
HpyF3I CTNAG 3 cut(s) 135, 165, 382
Hsp92II CATG 5 cut(s) 28, 62, 130, 283, 536
HspAI GCGC 1 cut(s) 132
Kpn2I TCCGGA 1 cut(s) 501
Kzo9I GATC 2 cut(s) 347, 549
LmnI GCTCC 2 cut(s) 4, 593
LpnPI CCDG 7 cut(s) 225, 240, 375, 477, 515, 578, 604
Lsp1109I GCAGC 2 cut(s) 183, 400
LweI GCATC 1 cut(s) 183
MaeI CTAG 1 cut(s) 470
MalI GATC 2 cut(s) 349, 551
MboI GATC 2 cut(s) 347, 549
MboII GAAGA 4 cut(s) 92, 169, 213, 296
MfeI CAATTG 2 cut(s) 240, 474
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 7 cut(s) 102, 240, 269, 359, 398, 474, 574
MlyI GAGTC 1 cut(s) 362
MnlI CCTC 5 cut(s) 208, 251, 375, 518, 590
MroI TCCGGA 1 cut(s) 501
MseI TTAA 1 cut(s) 569
MslI CAYNNNNRTG 2 cut(s) 258, 455
MspI CCGG 2 cut(s) 502, 591
MunI CAATTG 2 cut(s) 240, 474
Mva1269I GAATGC 1 cut(s) 542
MwoI GCNNNNNNNGC 1 cut(s) 429
NdeII GATC 2 cut(s) 347, 549
NlaIII CATG 5 cut(s) 28, 62, 130, 283, 536
NlaIV GGNNCC 1 cut(s) 506
OliI CACNNNNGTG 1 cut(s) 258
PagI TCATGA 1 cut(s) 532
PctI GAATGC 1 cut(s) 542
PfeI GAWTC 3 cut(s) 17, 149, 460
PkrI GCNGC 3 cut(s) 173, 198, 415
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
PspN4I GGNNCC 1 cut(s) 506
PspPI GGNCC 1 cut(s) 245
PstNI CAGNNNCTG 1 cut(s) 389
RseI CAYNNNNRTG 2 cut(s) 258, 455
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 3 cut(s) 172, 197, 414
Sau3AI GATC 2 cut(s) 347, 549
Sau96I GGNCC 1 cut(s) 245
SchI GAGTC 1 cut(s) 362
SduI GDGCHC 1 cut(s) 98
SfaNI GCATC 1 cut(s) 183
SinI GGWCC 1 cut(s) 245
SmiMI CAYNNNNRTG 2 cut(s) 258, 455
Sse9I AATT 7 cut(s) 102, 240, 269, 359, 398, 474, 574
SsiI CCGC 1 cut(s) 171
SspI AATATT 1 cut(s) 376
SspMI CTAG 1 cut(s) 470
StyI CCWWGG 1 cut(s) 189
TaqI TCGA 1 cut(s) 371
TasI AATT 7 cut(s) 102, 240, 269, 359, 398, 474, 574
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 3 cut(s) 17, 149, 460
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TscAI CASTG 1 cut(s) 151
TseI GCWGC 2 cut(s) 196, 413
TspDTI ATGAA 2 cut(s) 549, 587
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 1 cut(s) 398
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.