Rh2AG661900

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000188
Physical Location & Seq
Forward (+)
87759712 .. 87763263
3552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG661900.1

Sequence Viewer

Length: 1482 bp
ATGAGAAACTTAGATCAAATCCAATACAAAGGCATGGGAGGTAGCAGTGATTTAGAAAAGGGTATAGTGGATGAAAGCGTTCCAGTAGTTGGTCTAGAACGTAAAGGTATGACTGCTGAACAAAAGAAAAGAACCTTCTGTACAGAGCTTTCGGAGGCCCAATCACCTTTGCCTTTTTCGTGTTGCATCTTCATAGTTCCCGAGGTGCTACGAAGACAAAAAAAGGAGGCATACGCACCTGACATAGTCTCAATCGGGCCCTTTCATCGAGGTGCTAAAAAATTAGAACTCGTGGAAAATGTGAAAAAATGGTATTTAAGATGTTTTCTCGCGCGCCAGCAACCAAACCCGACAGGATTGAGCTTGAATGACTTGCTTGAAAGCATGAGCCTAGATAGCTTGACTGAAAGCGTGGAGAGGTTGGCTGAAATGATCAAGGGAGAGAAACTGGATAAACGCGCTCGGGGTTGTTATTCAGACCCATGCGATCATCTTGACCAAGACGACTTCATAGAGATGCTCATACTCGATGGTTGTTTCTTGATAGAATTATTTCGGAAGGCATCTCTTACATCACGACAAGATGATGACGACCCTATTTTCAACGTATCTTGTATGCTCGAATATCTGTACCATGATCTTCTGTTGCTAGAAAATCAGCTACCTTGGTTTGTGCTACAGTATTTCTATGATCAAATTGAGAGCGGTAGTTCTAAACCCCTCAGTGAAGTTGTAATCGACTTCTTCAAAGATTCAGTGGCTGATATCAACATTTTCAGCACCCCCAAACCCGATCCTGAGTTTGAGATACTTCACATACTTGATCTGATTAGAACTTCGCTCGTTCAGGAACATGAAACTGAAGACGTTCAGCAAAATAAAGACTCAGGGGTCCCTTTCCAAAAAAAAAAAAAAGACTCAGGGGTCAACCACTTGCCACAGAGGATACCTAGTGCTGCTGCTCTTTCAGAGGCGGGAGTTGAATTTAAAAATGGCACCTCAGGTTGCATATTGAACATAAAGTTCGAAAAAGGCGTTTTCACCATTCCTCCTCTGGCTATCGATGAGAGGACGGGTCCTTTGTTCAGGAACCTTATGGCCTACGAACAGTGTTTTCACAATTGCGCACACAAGATAACATCCTACGCGGTTTTGATGGATAACCTCATCGATGCGAACGACGATGTGAATCTTCTATGTGAGAAGCATATAGTAGCCAACTGGTTGAGTGCCGATGATGCTGCGAAGTTCTTCAACGATCTATACAATGACACCACAGTCATTGACTTTGTCTACAAGAATCTCTGCGATAACGTGCGTAAATATCACGAAGCTCCGTGGAACAGGTGGAGAGAGAAATTGAAACGTGATTATTTTGATACACCATGGGCTACTATCTCTTTTTTTGCAGCTTTTGTCCTCCTGGTCCTCACCTTCTTGCAAACCATTTACACAATCCAGCCATACTATCATCCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

493

Amino Acids

56.62

Weight (kDa)

5.11

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 63 - 477 5.7e-113 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 890, 923, 1277
Acc16I TGCGCA 1 cut(s) 1126
AccB1I GGYRCC 1 cut(s) 995
AccB7I CCANNNNNTGG 1 cut(s) 89
AccBSI CCGCTC 1 cut(s) 705
AccI GTMKAC 1 cut(s) 1293
AccII CGCG 4 cut(s) 332, 334, 459, 1148
AciI CCGC 3 cut(s) 705, 974, 1148
AclWI GGATC 1 cut(s) 788
AcsI RAATTY 1 cut(s) 983
AcuI CTGAAG 1 cut(s) 882
AfaI GTAC 2 cut(s) 142, 632
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 8 cut(s) 367, 380, 604, 748, 983, 1015, 1255, 1363
AjnI CCWGG 1 cut(s) 1422
AluBI AGCT 6 cut(s) 148, 363, 399, 661, 1334, 1412
AluI AGCT 6 cut(s) 148, 363, 399, 661, 1334, 1412
Alw26I GTCTC 1 cut(s) 253
AlwI GGATC 1 cut(s) 788
AlwNI CAGNNNCTG 1 cut(s) 761
Ama87I CYCGRG 2 cut(s) 200, 462
AoxI GGCC 3 cut(s) 156, 257, 1098
ApaI GGGCCC 1 cut(s) 261
ApeKI GCWGC 4 cut(s) 956, 959, 1241, 1409
ApoI RAATTY 1 cut(s) 983
ArsI GACNNNNNNTTYG 2 cut(s) 1063, 1095
Asp700I GAANNNNTTC 4 cut(s) 78, 552, 867, 1250
AspLEI GCGC 4 cut(s) 334, 336, 461, 1127
AspS9I GGNCC 6 cut(s) 157, 257, 258, 892, 1076, 1426
AsuHPI GGTGA 3 cut(s) 156, 1033, 1423
AsuII TTCGAA 1 cut(s) 1026
AvaI CYCGRG 2 cut(s) 200, 462
AvaII GGWCC 3 cut(s) 892, 1076, 1426
AxyI CCTNAGG 1 cut(s) 1000
BaeGI GKGCMC 1 cut(s) 261
BanI GGYRCC 1 cut(s) 995
BanII GRGCYC 1 cut(s) 261
BauI CACGAG 1 cut(s) 290
BbsI GAAGAC 2 cut(s) 220, 870
BbvI GCAGC 4 cut(s) 943, 946, 1228, 1421
BccI CCATC 2 cut(s) 524, 1150
BcgI CGANNNNNNTGC 2 cut(s) 1223, 1257
BciT130I CCWGG 1 cut(s) 1424
BciVI GTATCC 1 cut(s) 939
BclI TGATCA 2 cut(s) 432, 691
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 4 cut(s) 95, 392, 650, 951
BfmI CTRYAG 1 cut(s) 677
BfuI GTATCC 1 cut(s) 939
BisI GCNGC 4 cut(s) 957, 960, 1242, 1410
BlsI GCNGC 4 cut(s) 958, 961, 1243, 1411
Bme1390I CCNGG 1 cut(s) 1424
Bme18I GGWCC 3 cut(s) 892, 1076, 1426
BmeT110I CYCGRG 2 cut(s) 200, 462
BmgT120I GGNCC 6 cut(s) 157, 257, 258, 892, 1076, 1426
BmiI GGNNCC 6 cut(s) 259, 893, 894, 997, 1077, 1091
BmrFI CCNGG 1 cut(s) 1424
BmsI GCATC 5 cut(s) 195, 507, 572, 1162, 1228
BpiI GAAGAC 2 cut(s) 220, 870
Bpu14I TTCGAA 1 cut(s) 1026
Bsa29I ATCGAT 2 cut(s) 1062, 1170
BsaBI GATNNNNATC 1 cut(s) 1188
BsaJI CCNNGG 4 cut(s) 201, 665, 1337, 1385
BsaXI ACNNNNNCTCC 2 cut(s) 1033, 1063
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 3 cut(s) 83, 453, 1226
Bse21I CCTNAGG 1 cut(s) 1000
Bse8I GATNNNNATC 1 cut(s) 1188
BseBI CCWGG 1 cut(s) 1424
BseCI ATCGAT 2 cut(s) 1062, 1170
BseDI CCNNGG 4 cut(s) 201, 665, 1337, 1385
BseGI GGATG 3 cut(s) 76, 1139, 1471
BseJI GATNNNNATC 1 cut(s) 1188
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMII CTCAG 5 cut(s) 736, 789, 900, 933, 1014
BseNI ACTGG 3 cut(s) 83, 453, 1226
BsePI GCGCGC 1 cut(s) 332
BseRI GAGGAG 1 cut(s) 1041
BseSI GKGCMC 1 cut(s) 261
BseXI GCAGC 4 cut(s) 943, 946, 1228, 1421
Bsh1236I CGCG 4 cut(s) 332, 334, 459, 1148
BshFI GGCC 3 cut(s) 158, 259, 1100
BshNI GGYRCC 1 cut(s) 995
BshVI ATCGAT 2 cut(s) 1062, 1170
BsiHKCI CYCGRG 2 cut(s) 200, 462
BslFI GGGAC 1 cut(s) 878
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 878
BsnI GGCC 3 cut(s) 158, 259, 1100
BsoBI CYCGRG 2 cut(s) 200, 462
Bsp119I TTCGAA 1 cut(s) 1026
Bsp120I GGGCCC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 261
Bsp1407I TGTACA 1 cut(s) 140
Bsp143I GATC 8 cut(s) 13, 432, 487, 637, 691, 793, 823, 1258
Bsp19I CCATGG 1 cut(s) 1385
BspACI CCGC 3 cut(s) 705, 974, 1148
BspANI GGCC 3 cut(s) 158, 259, 1100
BspCNI CTCAG 5 cut(s) 735, 790, 899, 932, 1013
BspDI ATCGAT 2 cut(s) 1062, 1170
BspFNI CGCG 4 cut(s) 332, 334, 459, 1148
BspLI GGNNCC 6 cut(s) 259, 893, 894, 997, 1077, 1091
BspPI GGATC 1 cut(s) 788
BspT104I TTCGAA 1 cut(s) 1026
BspT107I GGYRCC 1 cut(s) 995
BsrBI CCGCTC 1 cut(s) 705
BsrGI TGTACA 1 cut(s) 140
BsrI ACTGG 3 cut(s) 83, 453, 1226
BssECI CCNNGG 4 cut(s) 201, 665, 1337, 1385
BssHII GCGCGC 1 cut(s) 332
BssMI GATC 8 cut(s) 13, 432, 487, 637, 691, 793, 823, 1258
BssSI CACGAG 1 cut(s) 290
BssT1I CCWWGG 2 cut(s) 665, 1385
Bst2BI CACGAG 1 cut(s) 290
Bst2UI CCWGG 1 cut(s) 1424
Bst4CI ACNGT 3 cut(s) 681, 1110, 1279
BstAUI TGTACA 1 cut(s) 140
BstBI TTCGAA 1 cut(s) 1026
BstC8I GCNNGC 2 cut(s) 334, 338
BstDEI CTNAG 6 cut(s) 10, 722, 798, 886, 919, 1000
BstDSI CCRYGG 2 cut(s) 1337, 1385
BstF5I GGATG 3 cut(s) 76, 1139, 1471
BstFNI CGCG 4 cut(s) 332, 334, 459, 1148
BstHHI GCGC 4 cut(s) 334, 336, 461, 1127
BstKTI GATC 8 cut(s) 16, 435, 490, 640, 694, 796, 826, 1261
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 8 cut(s) 13, 432, 487, 637, 691, 793, 823, 1258
BstMWI GCNNNNNNNGC 2 cut(s) 396, 1238
BstNI CCWGG 1 cut(s) 1424
BstSCI CCNGG 1 cut(s) 1422
BstSFI CTRYAG 1 cut(s) 677
BstSLI GKGCMC 1 cut(s) 261
BstUI CGCG 4 cut(s) 332, 334, 459, 1148
BstV1I GCAGC 4 cut(s) 943, 946, 1228, 1421
BstV2I GAAGAC 2 cut(s) 220, 870
Bsu15I ATCGAT 2 cut(s) 1062, 1170
Bsu36I CCTNAGG 1 cut(s) 1000
BsuI GTATCC 1 cut(s) 939
BsuRI GGCC 3 cut(s) 158, 259, 1100
BsuTUI ATCGAT 2 cut(s) 1062, 1170
BtgI CCRYGG 2 cut(s) 1337, 1385
BtsCI GGATG 3 cut(s) 76, 1139, 1471
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 4 cut(s) 52, 730, 762, 1115
Cac8I GCNNGC 2 cut(s) 334, 338
CaiI CAGNNNCTG 1 cut(s) 761
CfoI GCGC 4 cut(s) 334, 336, 461, 1127
Cfr13I GGNCC 6 cut(s) 157, 257, 258, 892, 1076, 1426
ClaI ATCGAT 2 cut(s) 1062, 1170
Csp6I GTAC 2 cut(s) 141, 631
CspCI CAANNNNNGTGG 2 cut(s) 1264, 1299
CviAII CATG 6 cut(s) 34, 385, 483, 635, 854, 1386
CviQI GTAC 2 cut(s) 141, 631
DdeI CTNAG 6 cut(s) 10, 722, 798, 886, 919, 1000
DpnI GATC 8 cut(s) 15, 434, 489, 639, 693, 795, 825, 1260
DpnII GATC 8 cut(s) 13, 432, 487, 637, 691, 793, 823, 1258
DraI TTTAAA 1 cut(s) 988
DrdI GACNNNNNNGTC 3 cut(s) 890, 923, 1277
DseDI GACNNNNNNGTC 3 cut(s) 890, 923, 1277
Eco130I CCWWGG 2 cut(s) 665, 1385
Eco24I GRGCYC 1 cut(s) 261
Eco32I GATATC 1 cut(s) 766
Eco47I GGWCC 3 cut(s) 892, 1076, 1426
Eco57I CTGAAG 1 cut(s) 882
Eco81I CCTNAGG 1 cut(s) 1000
Eco88I CYCGRG 2 cut(s) 200, 462
EcoO109I RGGNCCY 3 cut(s) 258, 892, 1076
EcoRII CCWGG 1 cut(s) 1422
EcoRV GATATC 1 cut(s) 766
EcoT14I CCWWGG 2 cut(s) 665, 1385
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 2 cut(s) 665, 1385
FaeI CATG 6 cut(s) 37, 388, 486, 638, 857, 1389
FaqI GGGAC 1 cut(s) 878
FatI CATG 6 cut(s) 33, 384, 482, 634, 853, 1385
FauI CCCGC 1 cut(s) 967
FbaI TGATCA 2 cut(s) 432, 691
FblI GTMKAC 1 cut(s) 1293
Fnu4HI GCNGC 4 cut(s) 957, 960, 1242, 1410
FokI GGATG 3 cut(s) 83, 1126, 1458
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 4 cut(s) 957, 960, 1242, 1410
FspBI CTAG 4 cut(s) 95, 392, 650, 951
FspI TGCGCA 1 cut(s) 1126
GlaI GCGC 4 cut(s) 333, 335, 460, 1126
GluI GCNGC 4 cut(s) 957, 960, 1242, 1410
HaeIII GGCC 3 cut(s) 158, 259, 1100
HhaI GCGC 4 cut(s) 334, 336, 461, 1127
Hin1II CATG 6 cut(s) 37, 388, 486, 638, 857, 1389
Hin6I GCGC 4 cut(s) 332, 334, 459, 1125
HinP1I GCGC 4 cut(s) 332, 334, 459, 1125
HincII GTYRAC 1 cut(s) 928
HindII GTYRAC 1 cut(s) 928
HinfI GANTC 5 cut(s) 752, 884, 917, 1189, 1300
HphI GGTGA 3 cut(s) 156, 1033, 1423
Hpy166II GTNNAC 2 cut(s) 928, 1294
Hpy188I TCNGA 5 cut(s) 154, 478, 558, 828, 970
Hpy188III TCNNGA 9 cut(s) 95, 200, 494, 541, 576, 797, 848, 1087, 1328
Hpy8I GTNNAC 2 cut(s) 928, 1294
Hpy99I CGWCG 1 cut(s) 1184
HpyAV CCTTC 3 cut(s) 145, 553, 1444
HpyCH4III ACNGT 3 cut(s) 681, 1110, 1279
HpyCH4IV ACGT 5 cut(s) 100, 606, 867, 1314, 1366
HpyCH4V TGCA 4 cut(s) 186, 1008, 1409, 1441
HpyF10VI GCNNNNNNNGC 2 cut(s) 396, 1238
HpyF3I CTNAG 6 cut(s) 10, 722, 798, 886, 919, 1000
HpySE526I ACGT 5 cut(s) 100, 606, 867, 1314, 1366
Hsp92II CATG 6 cut(s) 37, 388, 486, 638, 857, 1389
HspAI GCGC 4 cut(s) 332, 334, 459, 1125
KflI GGGWCCC 1 cut(s) 892
Ksp22I TGATCA 2 cut(s) 432, 691
Kzo9I GATC 8 cut(s) 13, 432, 487, 637, 691, 793, 823, 1258
LmnI GCTCC 1 cut(s) 1339
Lsp1109I GCAGC 4 cut(s) 943, 946, 1228, 1421
LweI GCATC 5 cut(s) 195, 507, 572, 1162, 1228
MaeI CTAG 4 cut(s) 95, 392, 650, 951
MaeII ACGT 5 cut(s) 100, 606, 867, 1314, 1366
MalI GATC 8 cut(s) 15, 434, 489, 639, 693, 795, 825, 1260
MbiI CCGCTC 1 cut(s) 705
MboI GATC 8 cut(s) 13, 432, 487, 637, 691, 793, 823, 1258
MboII GAAGA 7 cut(s) 181, 225, 632, 736, 875, 1184, 1243
MfeI CAATTG 1 cut(s) 1120
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 6 cut(s) 281, 548, 696, 983, 1120, 1358
MlyI GAGTC 2 cut(s) 878, 911
MroXI GAANNNNTTC 4 cut(s) 78, 552, 867, 1250
MseI TTAA 3 cut(s) 317, 987, 1480
MslI CAYNNNNRTG 2 cut(s) 270, 515
MspR9I CCNGG 1 cut(s) 1424
MunI CAATTG 1 cut(s) 1120
MvaI CCWGG 1 cut(s) 1424
MvnI CGCG 4 cut(s) 332, 334, 459, 1148
MwoI GCNNNNNNNGC 2 cut(s) 396, 1238
NcoI CCATGG 1 cut(s) 1385
NdeII GATC 8 cut(s) 13, 432, 487, 637, 691, 793, 823, 1258
NlaIII CATG 6 cut(s) 37, 388, 486, 638, 857, 1389
NlaIV GGNNCC 6 cut(s) 259, 893, 894, 997, 1077, 1091
NsbI TGCGCA 1 cut(s) 1126
NspV TTCGAA 1 cut(s) 1026
PauI GCGCGC 1 cut(s) 332
PcsI WCGNNNNNNNCGW 2 cut(s) 1032, 1176
PdmI GAANNNNTTC 4 cut(s) 78, 552, 867, 1250
PfeI GAWTC 3 cut(s) 752, 1189, 1300
PflFI GACNNNGTC 2 cut(s) 245, 1289
PflMI CCANNNNNTGG 1 cut(s) 89
PkrI GCNGC 4 cut(s) 958, 961, 1243, 1411
PleI GAGTC 2 cut(s) 878, 911
PpsI GAGTC 2 cut(s) 878, 911
PpuMI RGGWCCY 2 cut(s) 892, 1076
Psp5II RGGWCCY 2 cut(s) 892, 1076
Psp6I CCWGG 1 cut(s) 1422
PspGI CCWGG 1 cut(s) 1422
PspN4I GGNNCC 6 cut(s) 259, 893, 894, 997, 1077, 1091
PspOMI GGGCCC 1 cut(s) 257
PspPI GGNCC 6 cut(s) 157, 257, 258, 892, 1076, 1426
PspPPI RGGWCCY 2 cut(s) 892, 1076
PsrI GAACNNNNNNTAC 2 cut(s) 124, 156
PstNI CAGNNNCTG 1 cut(s) 761
PsyI GACNNNGTC 2 cut(s) 245, 1289
PteI GCGCGC 1 cut(s) 332
RsaI GTAC 2 cut(s) 142, 632
RsaNI GTAC 2 cut(s) 141, 631
RseI CAYNNNNRTG 2 cut(s) 270, 515
SaqAI TTAA 3 cut(s) 317, 987, 1480
SatI GCNGC 4 cut(s) 957, 960, 1242, 1410
Sau3AI GATC 8 cut(s) 13, 432, 487, 637, 691, 793, 823, 1258
Sau96I GGNCC 6 cut(s) 157, 257, 258, 892, 1076, 1426
SchI GAGTC 2 cut(s) 878, 911
ScrFI CCNGG 1 cut(s) 1424
SduI GDGCHC 1 cut(s) 261
SfaNI GCATC 5 cut(s) 195, 507, 572, 1162, 1228
SfcI CTRYAG 1 cut(s) 677
SfuI TTCGAA 1 cut(s) 1026
SinI GGWCC 3 cut(s) 892, 1076, 1426
SmiMI CAYNNNNRTG 2 cut(s) 270, 515
Sse9I AATT 6 cut(s) 281, 548, 696, 983, 1120, 1358
SsiI CCGC 3 cut(s) 705, 974, 1148
SspMI CTAG 4 cut(s) 95, 392, 650, 951
StyD4I CCNGG 1 cut(s) 1422
StyI CCWWGG 2 cut(s) 665, 1385
TaaI ACNGT 3 cut(s) 681, 1110, 1279
TaiI ACGT 5 cut(s) 103, 609, 870, 1317, 1369
TaqI TCGA 7 cut(s) 268, 528, 621, 738, 1026, 1062, 1170
TasI AATT 6 cut(s) 281, 548, 696, 983, 1120, 1358
TatI WGTACW 1 cut(s) 140
TfiI GAWTC 3 cut(s) 752, 1189, 1300
Tru1I TTAA 3 cut(s) 317, 987, 1480
Tru9I TTAA 3 cut(s) 317, 987, 1480
TscAI CASTG 4 cut(s) 52, 730, 762, 1115
TseI GCWGC 4 cut(s) 956, 959, 1241, 1409
TspDTI ATGAA 5 cut(s) 87, 181, 254, 499, 870
TspGWI ACGGA 1 cut(s) 1326
TspRI CASTG 4 cut(s) 52, 730, 762, 1115
Tth111I GACNNNGTC 2 cut(s) 245, 1289
Van91I CCANNNNNTGG 1 cut(s) 89
VpaK11BI GGWCC 3 cut(s) 892, 1076, 1426
XapI RAATTY 1 cut(s) 983
XbaI TCTAGA 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 1 cut(s) 1051
XmiI GTMKAC 1 cut(s) 1293
XmnI GAANNNNTTC 4 cut(s) 78, 552, 867, 1250
XspI CTAG 4 cut(s) 95, 392, 650, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.