Rh7DG072100

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000188
Physical Location & Seq
Reverse (-)
5593575 .. 5595094
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG072100.1

Sequence Viewer

Length: 858 bp
ATGACGGAATTGACCGTAGTCATGGAAGATCATGGCAGTACAAATATTGATGTTGAAGCATTGGAACAGAGGATGAAAGCAAAGCTTCGCAGTGATTCACCCTTGTCTGCTCAGTGCTGCATTTTCAGAGTTCCTGAATTACTCCGGAAACATAAACCAGAGGCATCTGATGTTGTCTCAATCGGACCCTTTCATCACAGTAGCAGCAAACTTTTTGCAAACATGAAAGATGTGAAACAGTGGTATTTAAATTCTCTACTCTTAAGAAAGAATATAAGTTTAAAAGCTTTGATCCAAGGTATTGATAGTATTACTTGGTTTGAGAAACGCGCCCGTGATTATTATGCAGAATCATTTAATCATCTTGACCAGAACCAATTCATAGAAATGATGATAATTGATGGCTGCTTCCTATTAGAACTATTTCAGAGACGTTCCAATATTTTCCCAGATTCAGATAAGGTCAATGTACTCAATGATCCCTTATCCAACATGGGTTGCATGATCCAGTATCTTTGCCATGATCTTCTGCTGCTAGAAAATCAACTGCCTTGGTTTGTTCTCGAGTCTCTATATAACCTTACCTGCTACGAACGAGGCTCTCTCACTAGGCTGGTTCTCAACTTCTTCATCAGCGGACTATCGTCACTGGCTCATAATTGCAACGGTTATCGCAATCACAGTCATGATAATGAAATTCTACACATACTTGATCTGATAAGAAGTGCTATTGTTGTTCCACTCCACAAATTTGAATCAATCGAACAAGAGATTACACTGCCCCATGCAACTGAACTCTTTGAGGCAGGCATTCAATTCAAAAGAAGCTTAGTTGGTGGCCGGCTTGATGACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

285

Amino Acids

32.91

Weight (kDa)

5.83

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 41 - 275 3.4e-50 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 593
AccII CGCG 1 cut(s) 330
AccIII TCCGGA 1 cut(s) 144
AciI CCGC 1 cut(s) 636
AclWI GGATC 3 cut(s) 286, 473, 499
AcoI YGGCCR 1 cut(s) 838
AcsI RAATTY 3 cut(s) 250, 696, 749
AfaI GTAC 2 cut(s) 40, 471
AflII CTTAAG 1 cut(s) 262
AgsI TTSAA 4 cut(s) 56, 755, 815, 820
AluBI AGCT 3 cut(s) 85, 287, 828
AluI AGCT 3 cut(s) 85, 287, 828
Alw26I GTCTC 3 cut(s) 181, 424, 573
AlwI GGATC 3 cut(s) 286, 473, 499
Ama87I CYCGRG 1 cut(s) 563
Aor13HI TCCGGA 1 cut(s) 144
AoxI GGCC 1 cut(s) 838
ApeKI GCWGC 4 cut(s) 117, 204, 405, 532
ApoI RAATTY 3 cut(s) 250, 696, 749
Asp700I GAANNNNTTC 2 cut(s) 377, 423
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 90
AvaI CYCGRG 1 cut(s) 563
AvaII GGWCC 1 cut(s) 185
BbvI GCAGC 4 cut(s) 104, 216, 392, 519
BccI CCATC 1 cut(s) 395
BcoDI GTCTC 3 cut(s) 181, 424, 573
BfaI CTAG 2 cut(s) 536, 609
BfrI CTTAAG 1 cut(s) 262
BfuAI ACCTGC 1 cut(s) 593
BisI GCNGC 4 cut(s) 118, 205, 406, 533
BlsI GCNGC 4 cut(s) 119, 206, 407, 534
Bme18I GGWCC 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 563
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 187
BmsI GCATC 1 cut(s) 173
BoxI GACNNNNGTC 2 cut(s) 17, 643
BplI GAGNNNNNCTC 2 cut(s) 588, 620
BsaJI CCNNGG 2 cut(s) 295, 551
BsaWI WCCGGW 1 cut(s) 144
Bse118I RCCGGY 1 cut(s) 840
Bse1I ACTGG 2 cut(s) 508, 654
BseAI TCCGGA 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 295, 551
BseGI GGATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 2 cut(s) 508, 654
BseXI GCAGC 4 cut(s) 104, 216, 392, 519
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 1 cut(s) 840
BsiHKCI CYCGRG 1 cut(s) 563
BsiSI CCGG 2 cut(s) 145, 841
BsmAI GTCTC 3 cut(s) 181, 424, 573
BsmBI CGTCTC 1 cut(s) 424
BsmI GAATGC 1 cut(s) 810
BsnI GGCC 1 cut(s) 840
BsoBI CYCGRG 1 cut(s) 563
Bsp13I TCCGGA 1 cut(s) 144
Bsp143I GATC 6 cut(s) 28, 291, 478, 504, 523, 712
BspACI CCGC 1 cut(s) 636
BspANI GGCC 1 cut(s) 840
BspCNI CTCAG 1 cut(s) 124
BspEI TCCGGA 1 cut(s) 144
BspFNI CGCG 1 cut(s) 330
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 1 cut(s) 187
BspMI ACCTGC 1 cut(s) 593
BspPI GGATC 3 cut(s) 286, 473, 499
BspTI CTTAAG 1 cut(s) 262
BsrFI RCCGGY 1 cut(s) 840
BsrI ACTGG 2 cut(s) 508, 654
BssAI RCCGGY 1 cut(s) 840
BssECI CCNNGG 2 cut(s) 295, 551
BssMI GATC 6 cut(s) 28, 291, 478, 504, 523, 712
BssT1I CCWWGG 2 cut(s) 295, 551
Bst4CI ACNGT 5 cut(s) 16, 200, 240, 668, 683
BstAFI CTTAAG 1 cut(s) 262
BstC8I GCNNGC 2 cut(s) 808, 842
BstDEI CTNAG 2 cut(s) 111, 829
BstF5I GGATG 1 cut(s) 78
BstFNI CGCG 1 cut(s) 330
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 6 cut(s) 31, 294, 481, 507, 526, 715
BstMAI GTCTC 3 cut(s) 181, 424, 573
BstMBI GATC 6 cut(s) 28, 291, 478, 504, 523, 712
BstPAI GACNNNNGTC 2 cut(s) 17, 643
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 4 cut(s) 104, 216, 392, 519
BsuRI GGCC 1 cut(s) 840
BtsCI GGATG 1 cut(s) 78
BtsI GCAGTG 2 cut(s) 97, 776
BtsIMutI CAGTG 5 cut(s) 97, 119, 245, 647, 776
BveI ACCTGC 1 cut(s) 593
Cac8I GCNNGC 2 cut(s) 808, 842
CciI TCATGA 1 cut(s) 685
CfoI GCGC 1 cut(s) 332
Cfr10I RCCGGY 1 cut(s) 840
Cfr13I GGNCC 1 cut(s) 185
Csp6I GTAC 2 cut(s) 39, 470
CviAII CATG 8 cut(s) 22, 32, 223, 493, 502, 521, 686, 785
CviJI RGCY 9 cut(s) 85, 287, 405, 600, 613, 653, 828, 840, 844
CviKI_1 RGCY 9 cut(s) 85, 287, 405, 600, 613, 653, 828, 840, 844
CviQI GTAC 2 cut(s) 39, 470
DdeI CTNAG 2 cut(s) 111, 829
DpnI GATC 6 cut(s) 30, 293, 480, 506, 525, 714
DpnII GATC 6 cut(s) 28, 291, 478, 504, 523, 712
DraI TTTAAA 2 cut(s) 249, 282
EaeI YGGCCR 1 cut(s) 838
Eco130I CCWWGG 2 cut(s) 295, 551
Eco47I GGWCC 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 563
EcoT14I CCWWGG 2 cut(s) 295, 551
ErhI CCWWGG 2 cut(s) 295, 551
Esp3I CGTCTC 1 cut(s) 424
FaeI CATG 8 cut(s) 25, 35, 226, 496, 505, 524, 689, 788
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FatI CATG 8 cut(s) 21, 31, 222, 492, 501, 520, 685, 784
Fnu4HI GCNGC 4 cut(s) 118, 205, 406, 533
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 4 cut(s) 118, 205, 406, 533
FspBI CTAG 2 cut(s) 536, 609
GlaI GCGC 1 cut(s) 331
GluI GCNGC 4 cut(s) 118, 205, 406, 533
HaeIII GGCC 1 cut(s) 840
HapII CCGG 2 cut(s) 145, 841
HhaI GCGC 1 cut(s) 332
Hin1II CATG 8 cut(s) 25, 35, 226, 496, 505, 524, 689, 788
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HindIII AAGCTT 3 cut(s) 83, 285, 826
HinfI GANTC 5 cut(s) 95, 350, 452, 566, 755
HpaII CCGG 2 cut(s) 145, 841
HphI GGTGA 1 cut(s) 90
Hpy188I TCNGA 6 cut(s) 128, 169, 185, 429, 457, 717
Hpy188III TCNNGA 5 cut(s) 134, 145, 365, 563, 686
HpyCH4III ACNGT 5 cut(s) 16, 200, 240, 668, 683
HpyCH4IV ACGT 1 cut(s) 433
HpyCH4V TGCA 6 cut(s) 120, 218, 347, 501, 663, 788
HpyF3I CTNAG 2 cut(s) 111, 829
HpySE526I ACGT 1 cut(s) 433
Hsp92II CATG 8 cut(s) 25, 35, 226, 496, 505, 524, 689, 788
HspAI GCGC 1 cut(s) 330
Kpn2I TCCGGA 1 cut(s) 144
KroI GCCGGC 1 cut(s) 840
KroNI GCCGGC 1 cut(s) 842
Kzo9I GATC 6 cut(s) 28, 291, 478, 504, 523, 712
Lsp1109I GCAGC 4 cut(s) 104, 216, 392, 519
LweI GCATC 1 cut(s) 173
MaeI CTAG 2 cut(s) 536, 609
MaeII ACGT 1 cut(s) 433
MaeIII GTNAC 1 cut(s) 645
MalI GATC 6 cut(s) 30, 293, 480, 506, 525, 714
MboI GATC 6 cut(s) 28, 291, 478, 504, 523, 712
MboII GAAGA 3 cut(s) 38, 518, 619
MluCI AATT 9 cut(s) 8, 137, 250, 377, 396, 658, 696, 749, 815
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 1 cut(s) 513
MnlI CCTC 4 cut(s) 63, 154, 590, 796
MroI TCCGGA 1 cut(s) 144
MroNI GCCGGC 1 cut(s) 840
MroXI GAANNNNTTC 2 cut(s) 377, 423
MseI TTAA 4 cut(s) 248, 263, 281, 357
MslI CAYNNNNRTG 3 cut(s) 386, 684, 690
MspA1I CMGCKG 1 cut(s) 636
MspCI CTTAAG 1 cut(s) 262
MspI CCGG 2 cut(s) 145, 841
Mva1269I GAATGC 1 cut(s) 810
MvnI CGCG 1 cut(s) 330
NaeI GCCGGC 1 cut(s) 842
NdeII GATC 6 cut(s) 28, 291, 478, 504, 523, 712
NgoMIV GCCGGC 1 cut(s) 840
NlaIII CATG 8 cut(s) 25, 35, 226, 496, 505, 524, 689, 788
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 645
PaeR7I CTCGAG 1 cut(s) 563
PagI TCATGA 1 cut(s) 685
PctI GAATGC 1 cut(s) 810
PdiI GCCGGC 1 cut(s) 842
PdmI GAANNNNTTC 2 cut(s) 377, 423
PfeI GAWTC 4 cut(s) 95, 350, 452, 755
PkrI GCNGC 4 cut(s) 119, 206, 407, 534
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
PshAI GACNNNNGTC 2 cut(s) 17, 643
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 185
RsaI GTAC 2 cut(s) 40, 471
RsaNI GTAC 2 cut(s) 39, 470
RseI CAYNNNNRTG 3 cut(s) 386, 684, 690
SaqAI TTAA 4 cut(s) 248, 263, 281, 357
SatI GCNGC 4 cut(s) 118, 205, 406, 533
Sau3AI GATC 6 cut(s) 28, 291, 478, 504, 523, 712
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 575
SetI ASST 8 cut(s) 87, 289, 301, 436, 465, 582, 587, 830
SfaNI GCATC 1 cut(s) 173
Sfr274I CTCGAG 1 cut(s) 563
SinI GGWCC 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 563
SmiI ATTTAAAT 1 cut(s) 249
SmiMI CAYNNNNRTG 3 cut(s) 386, 684, 690
SmlI CTYRAG 2 cut(s) 262, 563
SmoI CTYRAG 2 cut(s) 262, 563
Sse9I AATT 9 cut(s) 8, 137, 250, 377, 396, 658, 696, 749, 815
SsiI CCGC 1 cut(s) 636
SspI AATATT 2 cut(s) 46, 442
SspMI CTAG 2 cut(s) 536, 609
StyI CCWWGG 2 cut(s) 295, 551
SwaI ATTTAAAT 1 cut(s) 249
TaaI ACNGT 5 cut(s) 16, 200, 240, 668, 683
TaiI ACGT 1 cut(s) 436
TaqI TCGA 2 cut(s) 564, 762
TasI AATT 9 cut(s) 8, 137, 250, 377, 396, 658, 696, 749, 815
TatI WGTACW 2 cut(s) 38, 469
TfiI GAWTC 4 cut(s) 95, 350, 452, 755
Tru1I TTAA 4 cut(s) 248, 263, 281, 357
Tru9I TTAA 4 cut(s) 248, 263, 281, 357
TscAI CASTG 5 cut(s) 97, 119, 245, 654, 783
TseFI GTSAC 1 cut(s) 645
TseI GCWGC 4 cut(s) 117, 204, 405, 532
Tsp45I GTSAC 1 cut(s) 645
TspDTI ATGAA 6 cut(s) 89, 182, 239, 370, 619, 708
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 5 cut(s) 97, 119, 245, 654, 783
Vha464I CTTAAG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 3 cut(s) 250, 696, 749
XhoI CTCGAG 1 cut(s) 563
XmnI GAANNNNTTC 2 cut(s) 377, 423
XspI CTAG 2 cut(s) 536, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.