RLG00000035811

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000188
Physical Location & Seq
Forward (+)
72052968 .. 72054182
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035811

Sequence Viewer

Length: 1098 bp
ATGGCAGATAAAAGTGACATAGAACATGAGTTCCTGAGGTGGTCCAGACTCCGGAGACAAAACAAAGAAGCATATGAACCTGATATTGTCTCAATCGGACCCTTTCACCGAGGAGGCAAAACTGCGGGATTCCAATTCATGGAAAATATGAAACAATGGTACTTGCAAGGCCTTTTGTTGCGAACGAATACAAGTTTGGGAAGCTTGATCAAAAGCATTATGAAGTTTGATAAACAAGCTCGTGATTGCTATGCAGAACAATTCCATCATCTTAACCAAATCGACTTCGTTCAAATGCTGATAGTTGATGGTTGCTTCCTAATAGAACTTTTTCGAAAGGTATATTCCATCGATCTTCAAGATAAGAACGATCCCATTTTCAATGTGGACAGCATGCTTGAATACCTATACCATGATCTTATGCTTCTAGAAAATCAGCTACCTTGGTTTGTGCTAGAGTGTTTGTATAACCTATCTCACAGTAGTACTCAAAGGAAGCCTAACCTTTCCCTAACCGACCTAGTGTGCAACTTGTTCAGACTGTCGATGCTTAATGACAACATTTTCAACCATAACCGCAATTTCTCCTGTCAAATTTTGCACATAATTGATATGCTAAGAATGTTCATGGTTGTCCCATTTAAAGTCTCTTTAGACAAATATGAGCACCAGGAGGAAGATTACTATGAGTCCAAGGACAAGATAGAGTTGCTGCAAGGGATTCCTAGTGCAACTGATCTTTCAAAGGCAGGTATCAAATTCACATGCGAGTGGGATTGCATAATGAACATACAATTCAAAAATCCGCCATTGGTGATTGTGGAGAGGATGAGACCTTTATTCAGGAATCTGATTGCCTTTGAGCAGTGCTACTATAATTGTCAGCACAAGATAACGTCATATGCGGTTTTAATGGACAACCTTATTGAAACCAGTGAGGATGTCGAATTCCTTTGCAAAGAAGGAATACTAGCAACCAGTTTGAGTCATGAAGATGCATCCCAATTCTTTAAACAGCTTCACACAGACACCACCATCATTGAGTTCTACTACAAGGGATTCTGCACGATGTCAATGAGTATTACGATGCTGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

366

Amino Acids

43.12

Weight (kDa)

5.48

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 16 - 355 1.3e-84 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 740
AccB7I CCANNNNNTGG 1 cut(s) 139
AccIII TCCGGA 1 cut(s) 51
AciI CCGC 4 cut(s) 125, 577, 806, 905
AclWI GGATC 1 cut(s) 365
AcsI RAATTY 3 cut(s) 594, 758, 947
AfaI GTAC 2 cut(s) 161, 487
AfiI CCNNNNNNNGG 2 cut(s) 51, 139
AgsI TTSAA 8 cut(s) 293, 359, 382, 401, 568, 744, 799, 929
AjnI CCWGG 1 cut(s) 669
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AloI GAACNNNNNNTCC 2 cut(s) 15, 47
AluBI AGCT 4 cut(s) 204, 239, 439, 1018
AluI AGCT 4 cut(s) 204, 239, 439, 1018
Alw21I GWGCWC 1 cut(s) 669
Alw26I GTCTC 4 cut(s) 49, 94, 652, 826
AlwI GGATC 1 cut(s) 365
Aor13HI TCCGGA 1 cut(s) 51
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 712
ApoI RAATTY 3 cut(s) 594, 758, 947
Asp700I GAANNNNTTC 1 cut(s) 330
AspS9I GGNCC 2 cut(s) 42, 98
AsuHPI GGTGA 2 cut(s) 98, 826
AsuII TTCGAA 1 cut(s) 334
AvaII GGWCC 2 cut(s) 42, 98
AxyI CCTNAGG 1 cut(s) 35
BauI CACGAG 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 669
BbvI GCAGC 1 cut(s) 699
BccI CCATC 4 cut(s) 273, 302, 356, 1043
BciT130I CCWGG 1 cut(s) 671
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 4 cut(s) 49, 94, 652, 826
BfaI CTAG 5 cut(s) 428, 455, 521, 726, 971
BfuAI ACCTGC 1 cut(s) 740
BisI GCNGC 1 cut(s) 713
BlsI GCNGC 1 cut(s) 714
BmcAI AGTACT 1 cut(s) 487
Bme1390I CCNGG 1 cut(s) 671
Bme18I GGWCC 2 cut(s) 42, 98
BmgT120I GGNCC 2 cut(s) 42, 98
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 671
BmsI GCATC 4 cut(s) 537, 985, 1007, 1077
Bpu14I TTCGAA 1 cut(s) 334
Bsa29I ATCGAT 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 826
BsaJI CCNNGG 3 cut(s) 109, 443, 693
BsaWI WCCGGW 1 cut(s) 51
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 139
Bse1I ACTGG 2 cut(s) 933, 978
Bse21I CCTNAGG 1 cut(s) 35
BseAI TCCGGA 1 cut(s) 51
BseBI CCWGG 1 cut(s) 671
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 3 cut(s) 109, 443, 693
BseGI GGATG 3 cut(s) 834, 946, 998
BseLI CCNNNNNNNGG 2 cut(s) 51, 139
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 933, 978
BseRI GAGGAG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 699
BsgI GTGCAG 1 cut(s) 1048
BshFI GGCC 1 cut(s) 171
BshVI ATCGAT 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 669
BsiSI CCGG 1 cut(s) 52
BslFI GGGAC 1 cut(s) 620
BslI CCNNNNNNNGG 2 cut(s) 51, 139
BsmAI GTCTC 4 cut(s) 49, 94, 652, 826
BsmFI GGGAC 1 cut(s) 620
BsnI GGCC 1 cut(s) 171
Bso31I GGTCTC 1 cut(s) 826
Bsp119I TTCGAA 1 cut(s) 334
Bsp1286I GDGCHC 1 cut(s) 669
Bsp13I TCCGGA 1 cut(s) 51
Bsp143I GATC 5 cut(s) 207, 352, 370, 415, 736
BspACI CCGC 4 cut(s) 125, 577, 806, 905
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 1 cut(s) 27
BspDI ATCGAT 1 cut(s) 351
BspEI TCCGGA 1 cut(s) 51
BspHI TCATGA 1 cut(s) 988
BspLI GGNNCC 1 cut(s) 100
BspMI ACCTGC 1 cut(s) 740
BspPI GGATC 1 cut(s) 365
BspT104I TTCGAA 1 cut(s) 334
BspTNI GGTCTC 1 cut(s) 826
BsrI ACTGG 2 cut(s) 933, 978
BssECI CCNNGG 3 cut(s) 109, 443, 693
BssMI GATC 5 cut(s) 207, 352, 370, 415, 736
BssSI CACGAG 1 cut(s) 240
BssT1I CCWWGG 2 cut(s) 443, 693
Bst2BI CACGAG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 2 cut(s) 482, 543
BstBI TTCGAA 1 cut(s) 334
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 2 cut(s) 35, 617
BstF5I GGATG 3 cut(s) 834, 946, 998
BstKTI GATC 5 cut(s) 210, 355, 373, 418, 739
BstMAI GTCTC 4 cut(s) 49, 94, 652, 826
BstMBI GATC 5 cut(s) 207, 352, 370, 415, 736
BstNI CCWGG 1 cut(s) 671
BstNSI RCATGY 2 cut(s) 397, 768
BstSCI CCNGG 1 cut(s) 669
BstV1I GCAGC 1 cut(s) 699
Bsu15I ATCGAT 1 cut(s) 351
Bsu36I CCTNAGG 1 cut(s) 35
BsuRI GGCC 1 cut(s) 171
BsuTUI ATCGAT 1 cut(s) 351
BtsCI GGATG 3 cut(s) 834, 946, 998
BtsI GCAGTG 1 cut(s) 872
BtsIMutI CAGTG 2 cut(s) 872, 940
BveI ACCTGC 1 cut(s) 740
Cac8I GCNNGC 1 cut(s) 395
CciI TCATGA 1 cut(s) 988
Cfr13I GGNCC 2 cut(s) 42, 98
ClaI ATCGAT 1 cut(s) 351
Csp6I GTAC 2 cut(s) 160, 486
CspCI CAANNNNNGTGG 2 cut(s) 1021, 1056
CviAII CATG 7 cut(s) 26, 139, 394, 413, 628, 765, 989
CviJI RGCY 6 cut(s) 171, 204, 239, 439, 499, 1018
CviKI_1 RGCY 6 cut(s) 171, 204, 239, 439, 499, 1018
CviQI GTAC 2 cut(s) 160, 486
DdeI CTNAG 2 cut(s) 35, 617
DpnI GATC 5 cut(s) 209, 354, 372, 417, 738
DpnII GATC 5 cut(s) 207, 352, 370, 415, 736
DraI TTTAAA 2 cut(s) 643, 1012
EciI GGCGGA 1 cut(s) 795
Eco130I CCWWGG 2 cut(s) 443, 693
Eco147I AGGCCT 1 cut(s) 171
Eco31I GGTCTC 1 cut(s) 826
Eco47I GGWCC 2 cut(s) 42, 98
Eco81I CCTNAGG 1 cut(s) 35
EcoRI GAATTC 1 cut(s) 947
EcoRII CCWGG 1 cut(s) 669
EcoT14I CCWWGG 2 cut(s) 443, 693
EcoT22I ATGCAT 1 cut(s) 1000
ErhI CCWWGG 2 cut(s) 443, 693
FaeI CATG 7 cut(s) 29, 142, 397, 416, 631, 768, 992
FaqI GGGAC 1 cut(s) 620
FatI CATG 7 cut(s) 25, 138, 393, 412, 627, 764, 988
FauI CCCGC 1 cut(s) 118
FauNDI CATATG 2 cut(s) 73, 901
FbaI TGATCA 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 713
FokI GGATG 3 cut(s) 841, 953, 985
Fsp4HI GCNGC 1 cut(s) 713
FspBI CTAG 5 cut(s) 428, 455, 521, 726, 971
GluI GCNGC 1 cut(s) 713
HaeIII GGCC 1 cut(s) 171
HapII CCGG 1 cut(s) 52
Hin1II CATG 7 cut(s) 29, 142, 397, 416, 631, 768, 992
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 7 cut(s) 48, 129, 689, 721, 847, 985, 1059
HpaII CCGG 1 cut(s) 52
HphI GGTGA 2 cut(s) 98, 826
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 3 cut(s) 98, 539, 852
Hpy188III TCNNGA 8 cut(s) 34, 45, 52, 242, 359, 428, 844, 989
Hpy8I GTNNAC 1 cut(s) 388
HpyAV CCTTC 1 cut(s) 956
HpyCH4III ACNGT 2 cut(s) 482, 543
HpyCH4IV ACGT 1 cut(s) 896
HpyF3I CTNAG 2 cut(s) 35, 617
HpySE526I ACGT 1 cut(s) 896
Hsp92II CATG 7 cut(s) 29, 142, 397, 416, 631, 768, 992
Kpn2I TCCGGA 1 cut(s) 51
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 5 cut(s) 207, 352, 370, 415, 736
Lsp1109I GCAGC 1 cut(s) 699
LweI GCATC 4 cut(s) 537, 985, 1007, 1077
MaeI CTAG 5 cut(s) 428, 455, 521, 726, 971
MaeII ACGT 1 cut(s) 896
MaeIII GTNAC 1 cut(s) 14
MalI GATC 5 cut(s) 209, 354, 372, 417, 738
MboI GATC 5 cut(s) 207, 352, 370, 415, 736
MboII GAAGA 3 cut(s) 347, 689, 1004
MhlI GDGCHC 1 cut(s) 669
MlyI GAGTC 3 cut(s) 42, 698, 994
MnlI CCTC 6 cut(s) 30, 104, 107, 667, 819, 931
Mph1103I ATGCAT 1 cut(s) 1000
MroI TCCGGA 1 cut(s) 51
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 5 cut(s) 273, 552, 642, 911, 1011
MslI CAYNNNNRTG 2 cut(s) 769, 993
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 1 cut(s) 671
MvaI CCWGG 1 cut(s) 671
NdeI CATATG 2 cut(s) 73, 901
NdeII GATC 5 cut(s) 207, 352, 370, 415, 736
NlaIII CATG 7 cut(s) 29, 142, 397, 416, 631, 768, 992
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 14
NsiI ATGCAT 1 cut(s) 1000
NspI RCATGY 2 cut(s) 397, 768
NspV TTCGAA 1 cut(s) 334
PaeI GCATGC 1 cut(s) 397
PagI TCATGA 1 cut(s) 988
PceI AGGCCT 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 330
PfeI GAWTC 4 cut(s) 129, 721, 847, 1059
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 1 cut(s) 714
PleI GAGTC 3 cut(s) 42, 697, 993
PpsI GAGTC 3 cut(s) 42, 697, 993
Psp6I CCWGG 1 cut(s) 669
PspGI CCWGG 1 cut(s) 669
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 2 cut(s) 42, 98
RsaI GTAC 2 cut(s) 161, 487
RsaNI GTAC 2 cut(s) 160, 486
RseI CAYNNNNRTG 2 cut(s) 769, 993
SaqAI TTAA 5 cut(s) 273, 552, 642, 911, 1011
SatI GCNGC 1 cut(s) 713
Sau3AI GATC 5 cut(s) 207, 352, 370, 415, 736
Sau96I GGNCC 2 cut(s) 42, 98
ScaI AGTACT 1 cut(s) 487
SchI GAGTC 3 cut(s) 42, 698, 994
ScrFI CCNGG 1 cut(s) 671
SduI GDGCHC 1 cut(s) 669
SfaNI GCATC 4 cut(s) 537, 985, 1007, 1077
SfuI TTCGAA 1 cut(s) 334
SinI GGWCC 2 cut(s) 42, 98
SmiMI CAYNNNNRTG 2 cut(s) 769, 993
SphI GCATGC 1 cut(s) 397
SseBI AGGCCT 1 cut(s) 171
SsiI CCGC 4 cut(s) 125, 577, 806, 905
SspMI CTAG 5 cut(s) 428, 455, 521, 726, 971
StuI AGGCCT 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 669
StyI CCWWGG 2 cut(s) 443, 693
TaaI ACNGT 2 cut(s) 482, 543
TaiI ACGT 1 cut(s) 899
TaqI TCGA 5 cut(s) 282, 334, 351, 545, 945
TatI WGTACW 1 cut(s) 485
TfiI GAWTC 4 cut(s) 129, 721, 847, 1059
Tru1I TTAA 5 cut(s) 273, 552, 642, 911, 1011
Tru9I TTAA 5 cut(s) 273, 552, 642, 911, 1011
TscAI CASTG 2 cut(s) 872, 940
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 1 cut(s) 712
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 7 cut(s) 90, 127, 164, 236, 616, 800, 1005
TspRI CASTG 2 cut(s) 872, 940
Van91I CCANNNNNTGG 1 cut(s) 139
VpaK11BI GGWCC 2 cut(s) 42, 98
XapI RAATTY 3 cut(s) 594, 758, 947
XbaI TCTAGA 1 cut(s) 427
XceI RCATGY 2 cut(s) 397, 768
XcmI CCANNNNNNNNNTGG 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 5 cut(s) 428, 455, 521, 726, 971
ZrmI AGTACT 1 cut(s) 487
Zsp2I ATGCAT 1 cut(s) 1000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.