RLG00000036450

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000188
Physical Location & Seq
Reverse (-)
80772760 .. 80774562
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036450

Sequence Viewer

Length: 1107 bp
ATGGTCGTTGCAGATTCCATTCAGATGAAGTTAGGGCGAGTTTCACCGGTGTCCCATAGTTATTCCGTTTTCAGGGTTCCAGAGGTGGTCCGAAGACGGGATAGTTATGCATACCGACCCAGTGCTATCTCCATAGGACTGTTGCACAGAGACGACGGGAATGAGTACCTGTTCATGGAAATCAGAATATTCGGTCTGCGCCACACCATCTATCAAGATCTTGTGCTGTTAGAGAATCAATTGCCTTGGTGTGTGCTCGAGAATTTGTACACCGAATTAAAGATGAGTACCGAGCTTCACAATGATTTTCAAGAATTTTCCCTAACTGATCTGGTGATTGACTTATTGCACCTTGAATCAGGGTTTGATTGTTTTATCATTAAGGCCAAATTCGAATTTTCATTTCAACCAGCTTTGCACATCCTTGATGTCATTAGAGGTTCCCTCATTGCTGCACAAGATTCAAAATCCTATGGAGGTTCCCTCATTGCTGTACAAGATTCAAAATACCATGAATACGGGGGCGATTATGCTGAGATGAAATTGAGTAATACGATTCCTAATGCTGTTGCTCTCTCAGAAGTGGGCATAGAATTCAAAAAGGGCACTCGAGATTGTATAATGGATATAGAGTTCAAGAATGGTGTTTTTACCATTCCGCCATTTGAATTTAAGACATCGGATATTCGGTTGTTCAGTAACATGATTGCATTTGAGGAGTGCTCTACAAACTGCATGCCCCTGATAACCTCCTACTTGATTTTGATGAATAACCTGATCACTTCGAGCAAGGATGTGCAGTTGTTAGCTGAGAAAGGAATACTAACCAACTCGAAGGCTACTGCTGAGTTCTTAAACAAGGTTTCCTACAATGTCATTTTTAATGTCAATACAACCAGATTTTCATCCTGCTACTGGGTCCTCTACAACGATGTCTGCAAGTATTACAGAAATCAGTTGGACAAGTGTTTACCAAAAAAATTCCAGTGGATGAAGGTATTGAAGCATGACTATTTTGGTACACCATGGAAAGTTGTTTCTCTGATTGCAGCCTTTACGCTCCTTGTTCTCACCTTACTGCAGACCATCTACACAATGAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

369

Amino Acids

42.33

Weight (kDa)

6.46

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 68 - 357 5.1e-57 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 659
AcsI RAATTY 7 cut(s) 262, 314, 389, 395, 593, 668, 980
AfaI GTAC 5 cut(s) 167, 269, 289, 495, 1021
AfiI CCNNNNNNNGG 4 cut(s) 72, 97, 175, 915
AgeI ACCGGT 1 cut(s) 46
AgsI TTSAA 9 cut(s) 311, 356, 407, 465, 504, 598, 637, 668, 1003
AloI GAACNNNNNNTCC 2 cut(s) 617, 649
AluBI AGCT 3 cut(s) 295, 413, 809
AluI AGCT 3 cut(s) 295, 413, 809
Alw21I GWGCWC 2 cut(s) 258, 725
Alw26I GTCTC 1 cut(s) 144
Ama87I CYCGRG 2 cut(s) 257, 609
AoxI GGCC 1 cut(s) 384
ApeKI GCWGC 2 cut(s) 452, 1049
ApoI RAATTY 7 cut(s) 262, 314, 389, 395, 593, 668, 980
AsiGI ACCGGT 1 cut(s) 46
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 2 cut(s) 88, 919
AsuHPI GGTGA 3 cut(s) 36, 346, 1063
AsuII TTCGAA 1 cut(s) 393
AvaI CYCGRG 2 cut(s) 257, 609
AvaII GGWCC 2 cut(s) 88, 919
BaeGI GKGCMC 1 cut(s) 608
BbsI GAAGAC 1 cut(s) 100
Bbv12I GWGCWC 2 cut(s) 258, 725
BbvI GCAGC 2 cut(s) 439, 1061
BccI CCATC 2 cut(s) 215, 1094
BclI TGATCA 1 cut(s) 777
BcoDI GTCTC 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 1079
BglII AGATCT 1 cut(s) 217
BisI GCNGC 2 cut(s) 453, 1050
BlsI GCNGC 2 cut(s) 454, 1051
Bme18I GGWCC 2 cut(s) 88, 919
BmeT110I CYCGRG 2 cut(s) 257, 609
BmgT120I GGNCC 2 cut(s) 88, 919
BmiI GGNNCC 4 cut(s) 78, 442, 481, 920
BmrI ACTGGG 2 cut(s) 114, 925
BmuI ACTGGG 2 cut(s) 114, 925
BpiI GAAGAC 1 cut(s) 100
BplI GAGNNNNNCTC 6 cut(s) 429, 461, 468, 500, 707, 739
Bpu14I TTCGAA 1 cut(s) 393
BsaBI GATNNNNATC 1 cut(s) 904
BsaJI CCNNGG 2 cut(s) 245, 1025
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 97, 175, 915
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 3 cut(s) 120, 920, 985
Bse3DI GCAATG 2 cut(s) 447, 486
Bse8I GATNNNNATC 1 cut(s) 904
BseDI CCNNGG 2 cut(s) 245, 1025
BseGI GGATG 4 cut(s) 420, 799, 905, 996
BseJI GATNNNNATC 1 cut(s) 904
BseLI CCNNNNNNNGG 4 cut(s) 72, 97, 175, 915
BseMI GCAATG 2 cut(s) 447, 486
BseMII CTCAG 4 cut(s) 525, 591, 801, 837
BseNI ACTGG 3 cut(s) 120, 920, 985
BseRI GAGGAG 1 cut(s) 731
BseSI GKGCMC 1 cut(s) 608
BseXI GCAGC 2 cut(s) 439, 1061
BsgI GTGCAG 2 cut(s) 438, 818
BshFI GGCC 1 cut(s) 386
BshTI ACCGGT 1 cut(s) 46
BsiHKAI GWGCWC 2 cut(s) 258, 725
BsiHKCI CYCGRG 2 cut(s) 257, 609
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 4 cut(s) 72, 97, 175, 915
BsmAI GTCTC 1 cut(s) 144
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 1 cut(s) 386
BsoBI CYCGRG 2 cut(s) 257, 609
Bsp119I TTCGAA 1 cut(s) 393
Bsp1286I GDGCHC 3 cut(s) 258, 608, 725
Bsp1407I TGTACA 2 cut(s) 267, 493
Bsp143I GATC 3 cut(s) 217, 328, 777
Bsp19I CCATGG 1 cut(s) 1025
BspACI CCGC 1 cut(s) 659
BspANI GGCC 1 cut(s) 386
BspCNI CTCAG 4 cut(s) 526, 590, 802, 838
BspLI GGNNCC 4 cut(s) 78, 442, 481, 920
BspMAI CTGCAG 1 cut(s) 1083
BspT104I TTCGAA 1 cut(s) 393
BsrDI GCAATG 2 cut(s) 447, 486
BsrFI RCCGGY 1 cut(s) 46
BsrGI TGTACA 2 cut(s) 267, 493
BsrI ACTGG 3 cut(s) 120, 920, 985
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 2 cut(s) 245, 1025
BssMI GATC 3 cut(s) 217, 328, 777
BssT1I CCWWGG 2 cut(s) 245, 1025
Bst4CI ACNGT 1 cut(s) 141
BstAUI TGTACA 2 cut(s) 267, 493
BstBI TTCGAA 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 737
BstDEI CTNAG 4 cut(s) 534, 577, 810, 846
BstDSI CCRYGG 1 cut(s) 1025
BstF5I GGATG 4 cut(s) 420, 799, 905, 996
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 3 cut(s) 220, 331, 780
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 3 cut(s) 217, 328, 777
BstNSI RCATGY 1 cut(s) 739
BstSFI CTRYAG 1 cut(s) 1079
BstSLI GKGCMC 1 cut(s) 608
BstV1I GCAGC 2 cut(s) 439, 1061
BstV2I GAAGAC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 1 cut(s) 386
BtgI CCRYGG 1 cut(s) 1025
BtsCI GGATG 4 cut(s) 420, 799, 905, 996
BtsIMutI CAGTG 2 cut(s) 127, 992
Cac8I GCNNGC 1 cut(s) 737
CfoI GCGC 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 2 cut(s) 88, 919
Csp6I GTAC 5 cut(s) 166, 268, 288, 494, 1020
CspAI ACCGGT 1 cut(s) 46
CviAII CATG 6 cut(s) 175, 512, 703, 736, 1007, 1026
CviJI RGCY 6 cut(s) 295, 386, 413, 809, 839, 1052
CviKI_1 RGCY 6 cut(s) 295, 386, 413, 809, 839, 1052
CviQI GTAC 5 cut(s) 166, 268, 288, 494, 1020
DdeI CTNAG 4 cut(s) 534, 577, 810, 846
DpnI GATC 3 cut(s) 219, 330, 779
DpnII GATC 3 cut(s) 217, 328, 777
EciI GGCGGA 1 cut(s) 648
Eco130I CCWWGG 2 cut(s) 245, 1025
Eco47I GGWCC 2 cut(s) 88, 919
Eco88I CYCGRG 2 cut(s) 257, 609
EcoO109I RGGNCCY 1 cut(s) 919
EcoRI GAATTC 1 cut(s) 593
EcoT14I CCWWGG 2 cut(s) 245, 1025
EcoT22I ATGCAT 1 cut(s) 112
ErhI CCWWGG 2 cut(s) 245, 1025
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 6 cut(s) 178, 515, 706, 739, 1010, 1029
FaqI GGGAC 1 cut(s) 37
FatI CATG 6 cut(s) 174, 511, 702, 735, 1006, 1025
FbaI TGATCA 1 cut(s) 777
Fnu4HI GCNGC 2 cut(s) 453, 1050
FokI GGATG 4 cut(s) 407, 806, 892, 1003
Fsp4HI GCNGC 2 cut(s) 453, 1050
GlaI GCGC 1 cut(s) 200
GluI GCNGC 2 cut(s) 453, 1050
HaeIII GGCC 1 cut(s) 386
HapII CCGG 1 cut(s) 47
HhaI GCGC 1 cut(s) 201
Hin1II CATG 6 cut(s) 178, 515, 706, 739, 1010, 1029
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HinfI GANTC 6 cut(s) 14, 235, 356, 461, 500, 556
HpaII CCGG 1 cut(s) 47
HphI GGTGA 3 cut(s) 36, 346, 1063
Hpy166II GTNNAC 3 cut(s) 270, 971, 1022
Hpy188I TCNGA 6 cut(s) 24, 92, 185, 580, 682, 1044
Hpy188III TCNNGA 6 cut(s) 80, 215, 259, 311, 611, 637
Hpy8I GTNNAC 3 cut(s) 270, 971, 1022
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 829, 988
HpyCH4III ACNGT 1 cut(s) 141
HpyF3I CTNAG 4 cut(s) 534, 577, 810, 846
Hsp92II CATG 6 cut(s) 178, 515, 706, 739, 1010, 1029
HspAI GCGC 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 777
Kzo9I GATC 3 cut(s) 217, 328, 777
LmnI GCTCC 1 cut(s) 1065
Lsp1109I GCAGC 2 cut(s) 439, 1061
MaeIII GTNAC 1 cut(s) 698
MalI GATC 3 cut(s) 219, 330, 779
MboI GATC 3 cut(s) 217, 328, 777
MboII GAAGA 1 cut(s) 105
MfeI CAATTG 1 cut(s) 239
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 3 cut(s) 258, 608, 725
MmeI TCCRAC 1 cut(s) 939
MnlI CCTC 8 cut(s) 76, 431, 455, 470, 494, 709, 760, 932
Mph1103I ATGCAT 1 cut(s) 112
MseI TTAA 5 cut(s) 278, 381, 672, 854, 882
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 1 cut(s) 47
MunI CAATTG 1 cut(s) 239
NcoI CCATGG 1 cut(s) 1025
NdeII GATC 3 cut(s) 217, 328, 777
NlaIII CATG 6 cut(s) 178, 515, 706, 739, 1010, 1029
NlaIV GGNNCC 4 cut(s) 78, 442, 481, 920
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 1 cut(s) 739
NspV TTCGAA 1 cut(s) 393
PaeI GCATGC 1 cut(s) 739
PaeR7I CTCGAG 2 cut(s) 257, 609
PfeI GAWTC 6 cut(s) 14, 235, 356, 461, 500, 556
PinAI ACCGGT 1 cut(s) 46
PkrI GCNGC 2 cut(s) 454, 1051
PpuMI RGGWCCY 1 cut(s) 919
Psp5II RGGWCCY 1 cut(s) 919
PspN4I GGNNCC 4 cut(s) 78, 442, 481, 920
PspPI GGNCC 2 cut(s) 88, 919
PspPPI RGGWCCY 1 cut(s) 919
PstI CTGCAG 1 cut(s) 1083
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 5 cut(s) 167, 269, 289, 495, 1021
RsaNI GTAC 5 cut(s) 166, 268, 288, 494, 1020
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 5 cut(s) 278, 381, 672, 854, 882
SatI GCNGC 2 cut(s) 453, 1050
Sau3AI GATC 3 cut(s) 217, 328, 777
Sau96I GGNCC 2 cut(s) 88, 919
SduI GDGCHC 3 cut(s) 258, 608, 725
SfcI CTRYAG 1 cut(s) 1079
Sfr274I CTCGAG 2 cut(s) 257, 609
SfuI TTCGAA 1 cut(s) 393
SgrAI CRCCGGYG 1 cut(s) 46
SinI GGWCC 2 cut(s) 88, 919
SlaI CTCGAG 2 cut(s) 257, 609
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 2 cut(s) 257, 609
SmoI CTYRAG 2 cut(s) 257, 609
SphI GCATGC 1 cut(s) 739
SsiI CCGC 1 cut(s) 659
SspI AATATT 1 cut(s) 189
StyI CCWWGG 2 cut(s) 245, 1025
TaaI ACNGT 1 cut(s) 141
TaqI TCGA 5 cut(s) 258, 393, 610, 785, 833
TaqII GACCGA 1 cut(s) 182
TatI WGTACW 2 cut(s) 267, 493
TfiI GAWTC 6 cut(s) 14, 235, 356, 461, 500, 556
Tru1I TTAA 5 cut(s) 278, 381, 672, 854, 882
Tru9I TTAA 5 cut(s) 278, 381, 672, 854, 882
TscAI CASTG 2 cut(s) 127, 992
TseI GCWGC 2 cut(s) 452, 1049
TspDTI ATGAA 8 cut(s) 41, 163, 390, 528, 554, 782, 894, 1007
TspGWI ACGGA 1 cut(s) 55
TspRI CASTG 2 cut(s) 127, 992
VpaK11BI GGWCC 2 cut(s) 88, 919
XapI RAATTY 7 cut(s) 262, 314, 389, 395, 593, 668, 980
XceI RCATGY 1 cut(s) 739
XhoI CTCGAG 2 cut(s) 257, 609
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.