pycom08g19720

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000188
Physical Location & Seq
Reverse (-)
19709382 .. 19709912
531 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g19720.1

Sequence Viewer

Length: 531 bp
ATGAAAACGGAGTTTCTCCACATGATGATACTTGATGGTTGCTTCCTAGTACAAATAGTTAGGAAGTTTGTGAATAAGGAACAGAGGGACATTAATGACCCTGTATTCAACATGGATTGCATGTTCCAGTACATATGCCATGACCTTTTGCTCTTAGAAAATCAGATTCCTTGGTTTGTCCTACAGTACATATATGAGCTCACCGTGAAGTATTACCAGAACCCTGAGCCCTGCCTCTCGGTACTCATCCTCACCGAGCTCAGCTCACAACCACAACTGTCCCATAACTGTCGGTGGTATCTGGATCATCTACGAGGAAATAACTACAAAGAGGATGAAAGTGTGCTCCACATTCTCGATCTCATAAGAACTTCCATAGTTTTCTCATTCACTGAACGCTATGAGAAACCTTTCCACGATGCAAATACACAATTGATAGCTTCAGCAAGGATTGTCCCCTTGATGTCTCCCCTTTTCTTTCTTAGCCGAAAGTGGCCAAGTTGGCCACCATCCAACATGGTTTCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

177

Amino Acids

21.0

Weight (kDa)

5.83

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 2 - 134 1.9e-27 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 312
AcoI YGGCCR 2 cut(s) 494, 503
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 4 cut(s) 51, 131, 188, 243
AgsI TTSAA 1 cut(s) 109
AloI GAACNNNNNNTCC 2 cut(s) 107, 139
AluBI AGCT 4 cut(s) 199, 259, 264, 440
AluI AGCT 4 cut(s) 199, 259, 264, 440
Alw21I GWGCWC 3 cut(s) 201, 261, 348
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 1 cut(s) 312
AoxI GGCC 2 cut(s) 494, 503
AseI ATTAAT 1 cut(s) 93
Asp700I GAANNNNTTC 1 cut(s) 410
AsuHPI GGTGA 2 cut(s) 193, 244
BalI TGGCCA 2 cut(s) 496, 505
BanII GRGCYC 3 cut(s) 201, 231, 261
Bbv12I GWGCWC 3 cut(s) 201, 261, 348
BccI CCATC 2 cut(s) 29, 517
BcoDI GTCTC 1 cut(s) 471
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 182
BglI GCCNNNNNGGC 1 cut(s) 502
BlpI GCTNAGC 1 cut(s) 260
BmsI GCATC 1 cut(s) 409
BplI GAGNNNNNCTC 2 cut(s) 248, 280
Bpu10I CCTNAGC 1 cut(s) 225
Bpu1102I GCTNAGC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 3 cut(s) 246, 340, 509
BseMII CTCAG 2 cut(s) 216, 274
BseNI ACTGG 1 cut(s) 127
BshFI GGCC 2 cut(s) 496, 505
BsiHKAI GWGCWC 3 cut(s) 201, 261, 348
BslFI GGGAC 3 cut(s) 101, 265, 440
BsmAI GTCTC 1 cut(s) 471
BsmFI GGGAC 3 cut(s) 101, 265, 440
BsnI GGCC 2 cut(s) 496, 505
Bsp1286I GDGCHC 4 cut(s) 201, 231, 261, 348
Bsp143I GATC 2 cut(s) 304, 358
Bsp1720I GCTNAGC 1 cut(s) 260
BspANI GGCC 2 cut(s) 496, 505
BspCNI CTCAG 2 cut(s) 217, 273
BspPI GGATC 1 cut(s) 312
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 2 cut(s) 304, 358
BssT1I CCWWGG 1 cut(s) 170
Bst4CI ACNGT 4 cut(s) 186, 205, 279, 290
BstDEI CTNAG 5 cut(s) 154, 225, 260, 482, 528
BstF5I GGATG 3 cut(s) 246, 340, 509
BstKTI GATC 2 cut(s) 307, 361
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 2 cut(s) 304, 358
BstMWI GCNNNNNNNGC 1 cut(s) 502
BstNSI RCATGY 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 182
BsuRI GGCC 2 cut(s) 496, 505
BtsCI GGATG 3 cut(s) 246, 340, 509
BtsIMutI CAGTG 1 cut(s) 390
Csp6I GTAC 4 cut(s) 50, 130, 187, 242
CviAII CATG 5 cut(s) 22, 112, 121, 140, 517
CviJI RGCY 8 cut(s) 199, 229, 259, 264, 440, 486, 496, 505
CviKI_1 RGCY 8 cut(s) 199, 229, 259, 264, 440, 486, 496, 505
CviQI GTAC 4 cut(s) 50, 130, 187, 242
DdeI CTNAG 5 cut(s) 154, 225, 260, 482, 528
DpnI GATC 2 cut(s) 306, 360
DpnII GATC 2 cut(s) 304, 358
EaeI YGGCCR 2 cut(s) 494, 503
Ecl136II GAGCTC 2 cut(s) 199, 259
Eco130I CCWWGG 1 cut(s) 170
Eco24I GRGCYC 3 cut(s) 201, 231, 261
Eco53kI GAGCTC 2 cut(s) 199, 259
Eco57I CTGAAG 1 cut(s) 426
EcoICRI GAGCTC 2 cut(s) 199, 259
EcoT14I CCWWGG 1 cut(s) 170
EcoT38I GRGCYC 3 cut(s) 201, 231, 261
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 5 cut(s) 25, 115, 124, 143, 520
FaqI GGGAC 3 cut(s) 101, 265, 440
FatI CATG 5 cut(s) 21, 111, 120, 139, 516
FauNDI CATATG 1 cut(s) 134
FokI GGATG 3 cut(s) 233, 347, 496
FriOI GRGCYC 3 cut(s) 201, 231, 261
FspBI CTAG 1 cut(s) 47
HaeIII GGCC 2 cut(s) 496, 505
Hin1II CATG 5 cut(s) 25, 115, 124, 143, 520
HinfI GANTC 1 cut(s) 166
HphI GGTGA 2 cut(s) 193, 244
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 2 cut(s) 302, 356
HpyCH4III ACNGT 4 cut(s) 186, 205, 279, 290
HpyCH4V TGCA 2 cut(s) 120, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 502
HpyF3I CTNAG 5 cut(s) 154, 225, 260, 482, 528
Hsp92II CATG 5 cut(s) 25, 115, 124, 143, 520
Kzo9I GATC 2 cut(s) 304, 358
LmnI GCTCC 1 cut(s) 351
LpnPI CCDG 6 cut(s) 114, 140, 230, 237, 244, 287
LweI GCATC 1 cut(s) 409
MaeI CTAG 1 cut(s) 47
MalI GATC 2 cut(s) 306, 360
MboI GATC 2 cut(s) 304, 358
MfeI CAATTG 1 cut(s) 431
MhlI GDGCHC 4 cut(s) 201, 231, 261, 348
MlsI TGGCCA 2 cut(s) 496, 505
MluCI AATT 1 cut(s) 431
MluNI TGGCCA 2 cut(s) 496, 505
MnlI CCTC 5 cut(s) 78, 245, 260, 308, 325
Mox20I TGGCCA 2 cut(s) 496, 505
MroXI GAANNNNTTC 1 cut(s) 410
MscI TGGCCA 2 cut(s) 496, 505
MseI TTAA 1 cut(s) 93
Msp20I TGGCCA 2 cut(s) 496, 505
MunI CAATTG 1 cut(s) 431
MwoI GCNNNNNNNGC 1 cut(s) 502
NdeI CATATG 1 cut(s) 134
NdeII GATC 2 cut(s) 304, 358
NlaIII CATG 5 cut(s) 25, 115, 124, 143, 520
NspI RCATGY 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 410
PfeI GAWTC 1 cut(s) 166
PshBI ATTAAT 1 cut(s) 93
Psp124BI GAGCTC 2 cut(s) 201, 261
RsaI GTAC 4 cut(s) 51, 131, 188, 243
RsaNI GTAC 4 cut(s) 50, 130, 187, 242
SacI GAGCTC 2 cut(s) 201, 261
SaqAI TTAA 1 cut(s) 93
Sau3AI GATC 2 cut(s) 304, 358
SduI GDGCHC 4 cut(s) 201, 231, 261, 348
SetI ASST 6 cut(s) 147, 201, 261, 266, 412, 442
SfaNI GCATC 1 cut(s) 409
SfcI CTRYAG 1 cut(s) 182
SfiI GGCCNNNNNGGCC 1 cut(s) 502
Sse9I AATT 1 cut(s) 431
SspMI CTAG 1 cut(s) 47
SstI GAGCTC 2 cut(s) 201, 261
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 4 cut(s) 186, 205, 279, 290
TaqI TCGA 1 cut(s) 357
TasI AATT 1 cut(s) 431
TatI WGTACW 3 cut(s) 49, 129, 186
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 397
TspDTI ATGAA 2 cut(s) 17, 351
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 397
VspI ATTAAT 1 cut(s) 93
XceI RCATGY 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 410
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.