FvH4_5g19510

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000188
Physical Location & Seq
Reverse (-)
11339802 .. 11341864
2063 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19510.t1

Sequence Viewer

Length: 1083 bp
ATGGAAGATCATGGCAGTAGAAATATTGATGTTGAAGCATTGGAAAAGAGCCTGAAAGCAAAACTTTGCAGCGATTCACCCTTGTCTGCTAAGTGCTGCATCTTCAGAGTTCCTGAGTTACTCCGGAGGCACAAACCAGAGGCATATCAACCTGATATCGTCTCTATCGGACCCTTTCACGGAAGTGGTGAACTTTTTGAACCCATGAAAAAAGTGAAACTGTGGTATTTAGATACTCTACTCTTACGAAAGTGTGTATGTTTAAAATCTTTGATCCAAGGTATTGATAAAATTACCGGGTTTGAGGAACGCGCCCGTGATTATTATGCAGACTCAATTGATCATCTTAACCATAAAGAATTTGTAGAAATGATGATAATTGATGGCTGCTTCCTATTAGCACTATTTTGGAGAAGTTACTATGTTTACCCAGATTCAGATACGGTTGATGATCCCCTATTCCCAGATTCAGATACGGTTGATGATCCCCTATTCAATATGAGTTGCATGTACCAGTATCTTTGCCATGATCTCCTGCTACTAGAAAATCAGCTGCCTTGGTTTGTTCTCGAGTCTCTACATAGCCTTATCTGCAACAATCAAGTCCCCCTCACTACGCTTGTGCTTAATTTCTTCAGCAGATTATCATCAATGTCCGATTATTGCGAGGGTTATACCAATCACACTCATGATGAGGAAATTCTACACATACTTGATCTGATAAGAAGTGCTATTGTTGTTCCATTCCGCAAATTTGAATCAACAGAATCCAAATATGCAATGCCCCATGCAACTGCTCTCTTGGAGGCAGGCATTGAATTCAGAAGAAGCTCAGTTGATGGGTTAATGAATATTGATTTTAAAGATGGAGTTCTCACAATTCCACAGCTTGCAATTGCAGAGATGACTGAACCTTTGTTCAGGAACCTCATAGCCTTCGAGCAATGCTATCATGGTCGCATGCATCAAGTGGCTTCTTATGCATTTTTAATGGATAAGCTTATTTCTTCCAGCAAGGATGTCGTTTTTCTCTGTGACAAACAAATATTCTATAACTGGTTCAGTGCTGAAGAGGGTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

361

Amino Acids

41.53

Weight (kDa)

5.01

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 34 - 357 9.8e-85 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 312
AccIII TCCGGA 1 cut(s) 123
AciI CCGC 1 cut(s) 748
AclWI GGATC 3 cut(s) 268, 446, 479
AcsI RAATTY 4 cut(s) 359, 699, 752, 818
AcuI CTGAAG 2 cut(s) 88, 619
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 5 cut(s) 35, 200, 496, 758, 818
AleI CACNNNNGTG 1 cut(s) 183
AluBI AGCT 4 cut(s) 553, 831, 889, 1000
AluI AGCT 4 cut(s) 553, 831, 889, 1000
Alw26I GTCTC 2 cut(s) 166, 579
AlwI GGATC 3 cut(s) 268, 446, 479
Ama87I CYCGRG 1 cut(s) 569
Aor13HI TCCGGA 1 cut(s) 123
ApeKI GCWGC 4 cut(s) 69, 96, 387, 553
ApoI RAATTY 4 cut(s) 359, 699, 752, 818
ArsI GACNNNNNNTTYG 2 cut(s) 898, 930
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 2 cut(s) 69, 200
AvaI CYCGRG 1 cut(s) 569
AvaII GGWCC 1 cut(s) 170
BbvI GCAGC 4 cut(s) 81, 83, 374, 540
BccI CCATC 3 cut(s) 377, 833, 860
BcgI CGANNNNNNTGC 2 cut(s) 1003, 1037
BclI TGATCA 1 cut(s) 340
BcnI CCSGG 1 cut(s) 298
BcoDI GTCTC 2 cut(s) 166, 579
BfaI CTAG 2 cut(s) 542, 1081
BisI GCNGC 4 cut(s) 70, 97, 388, 554
BlsI GCNGC 4 cut(s) 71, 98, 389, 555
Bme1390I CCNGG 1 cut(s) 298
Bme18I GGWCC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 3 cut(s) 172, 926, 1078
BmrFI CCNGG 1 cut(s) 298
BmsI GCATC 2 cut(s) 108, 973
BpuMI CCSGG 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 646
BsaJI CCNNGG 2 cut(s) 277, 557
BsaWI WCCGGW 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 514, 1061
Bse3DI GCAATG 2 cut(s) 786, 950
Bse8I GATNNNNATC 1 cut(s) 646
BseAI TCCGGA 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 277, 557
BseGI GGATG 1 cut(s) 1024
BseJI GATNNNNATC 1 cut(s) 646
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMI GCAATG 2 cut(s) 786, 950
BseMII CTCAG 2 cut(s) 105, 846
BseNI ACTGG 2 cut(s) 514, 1061
BseXI GCAGC 4 cut(s) 81, 83, 374, 540
Bsh1236I CGCG 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 569
BsiSI CCGG 2 cut(s) 124, 297
BslFI GGGAC 1 cut(s) 590
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 2 cut(s) 166, 579
BsmBI CGTCTC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 590
BsoBI CYCGRG 1 cut(s) 569
Bsp13I TCCGGA 1 cut(s) 123
Bsp143I GATC 7 cut(s) 7, 273, 340, 451, 484, 529, 715
BspACI CCGC 1 cut(s) 748
BspCNI CTCAG 2 cut(s) 106, 845
BspEI TCCGGA 1 cut(s) 123
BspFNI CGCG 1 cut(s) 312
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 3 cut(s) 172, 926, 1078
BspPI GGATC 3 cut(s) 268, 446, 479
BsrDI GCAATG 2 cut(s) 786, 950
BsrI ACTGG 2 cut(s) 514, 1061
BssECI CCNNGG 2 cut(s) 277, 557
BssMI GATC 7 cut(s) 7, 273, 340, 451, 484, 529, 715
BssT1I CCWWGG 2 cut(s) 277, 557
Bst4CI ACNGT 3 cut(s) 222, 445, 478
Bst6I CTCTTC 1 cut(s) 1065
BstC8I GCNNGC 3 cut(s) 811, 891, 962
BstDEI CTNAG 3 cut(s) 90, 114, 832
BstF5I GGATG 1 cut(s) 1024
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 7 cut(s) 10, 276, 343, 454, 487, 532, 718
BstMAI GTCTC 2 cut(s) 166, 579
BstMBI GATC 7 cut(s) 7, 273, 340, 451, 484, 529, 715
BstMWI GCNNNNNNNGC 2 cut(s) 591, 980
BstNSI RCATGY 2 cut(s) 511, 964
BstSCI CCNGG 1 cut(s) 296
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 4 cut(s) 81, 83, 374, 540
BtsCI GGATG 1 cut(s) 1024
BtsIMutI CAGTG 1 cut(s) 1069
Cac8I GCNNGC 3 cut(s) 811, 891, 962
CciI TCATGA 1 cut(s) 688
CfoI GCGC 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 511
CviAII CATG 8 cut(s) 11, 205, 508, 527, 689, 788, 953, 961
CviJI RGCY 9 cut(s) 51, 387, 553, 585, 831, 889, 935, 974, 1000
CviKI_1 RGCY 9 cut(s) 51, 387, 553, 585, 831, 889, 935, 974, 1000
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 3 cut(s) 90, 114, 832
DpnI GATC 7 cut(s) 9, 275, 342, 453, 486, 531, 717
DpnII GATC 7 cut(s) 7, 273, 340, 451, 484, 529, 715
DraI TTTAAA 2 cut(s) 264, 862
Eam1104I CTCTTC 1 cut(s) 1065
EarI CTCTTC 1 cut(s) 1065
Eco130I CCWWGG 2 cut(s) 277, 557
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 170
Eco57I CTGAAG 2 cut(s) 88, 619
Eco88I CYCGRG 1 cut(s) 569
EcoRI GAATTC 1 cut(s) 818
EcoRV GATATC 1 cut(s) 157
EcoT14I CCWWGG 2 cut(s) 277, 557
EcoT22I ATGCAT 2 cut(s) 966, 985
ErhI CCWWGG 2 cut(s) 277, 557
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 8 cut(s) 14, 208, 511, 530, 692, 791, 956, 964
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FaqI GGGAC 1 cut(s) 590
FatI CATG 8 cut(s) 10, 204, 507, 526, 688, 787, 952, 960
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 4 cut(s) 70, 97, 388, 554
FokI GGATG 1 cut(s) 1031
Fsp4HI GCNGC 4 cut(s) 70, 97, 388, 554
FspBI CTAG 2 cut(s) 542, 1081
GlaI GCGC 1 cut(s) 313
GluI GCNGC 4 cut(s) 70, 97, 388, 554
HapII CCGG 2 cut(s) 124, 297
HhaI GCGC 1 cut(s) 314
Hin1II CATG 8 cut(s) 14, 208, 511, 530, 692, 791, 956, 964
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 998
HinfI GANTC 7 cut(s) 74, 332, 434, 467, 572, 758, 767
HpaII CCGG 2 cut(s) 124, 297
HphI GGTGA 2 cut(s) 69, 200
Hpy166II GTNNAC 2 cut(s) 191, 427
Hpy188I TCNGA 7 cut(s) 107, 170, 439, 472, 658, 720, 824
Hpy188III TCNNGA 5 cut(s) 113, 124, 569, 689, 922
Hpy8I GTNNAC 2 cut(s) 191, 427
HpyAV CCTTC 1 cut(s) 946
HpyCH4III ACNGT 3 cut(s) 222, 445, 478
HpyF10VI GCNNNNNNNGC 2 cut(s) 591, 980
HpyF3I CTNAG 3 cut(s) 90, 114, 832
Hsp92II CATG 8 cut(s) 14, 208, 511, 530, 692, 791, 956, 964
HspAI GCGC 1 cut(s) 312
Kpn2I TCCGGA 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 7 cut(s) 7, 273, 340, 451, 484, 529, 715
Lsp1109I GCAGC 4 cut(s) 81, 83, 374, 540
LweI GCATC 2 cut(s) 108, 973
MaeI CTAG 2 cut(s) 542, 1081
MaeIII GTNAC 3 cut(s) 117, 416, 1034
MalI GATC 7 cut(s) 9, 275, 342, 453, 486, 531, 717
MboI GATC 7 cut(s) 7, 273, 340, 451, 484, 529, 715
MboII GAAGA 6 cut(s) 17, 94, 625, 837, 999, 1082
MfeI CAATTG 2 cut(s) 336, 894
MlyI GAGTC 2 cut(s) 326, 581
MnlI CCTC 9 cut(s) 120, 133, 298, 620, 661, 688, 799, 938, 1066
Mph1103I ATGCAT 2 cut(s) 966, 985
MroI TCCGGA 1 cut(s) 123
MseI TTAA 6 cut(s) 263, 348, 627, 845, 861, 989
MslI CAYNNNNRTG 2 cut(s) 183, 687
MspA1I CMGCKG 1 cut(s) 553
MspI CCGG 2 cut(s) 124, 297
MspR9I CCNGG 1 cut(s) 298
MunI CAATTG 2 cut(s) 336, 894
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 591, 980
NciI CCSGG 1 cut(s) 298
NdeII GATC 7 cut(s) 7, 273, 340, 451, 484, 529, 715
NlaIII CATG 8 cut(s) 14, 208, 511, 530, 692, 791, 956, 964
NlaIV GGNNCC 3 cut(s) 172, 926, 1078
NmuCI GTSAC 1 cut(s) 1034
NsiI ATGCAT 2 cut(s) 966, 985
NspI RCATGY 2 cut(s) 511, 964
OliI CACNNNNGTG 1 cut(s) 183
PaeI GCATGC 1 cut(s) 964
PaeR7I CTCGAG 1 cut(s) 569
PagI TCATGA 1 cut(s) 688
PfeI GAWTC 5 cut(s) 74, 434, 467, 758, 767
PkrI GCNGC 4 cut(s) 71, 98, 389, 555
PleI GAGTC 2 cut(s) 326, 580
PpsI GAGTC 2 cut(s) 326, 580
PspN4I GGNNCC 3 cut(s) 172, 926, 1078
PspPI GGNCC 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 553
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
RseI CAYNNNNRTG 2 cut(s) 183, 687
SaqAI TTAA 6 cut(s) 263, 348, 627, 845, 861, 989
SatI GCNGC 4 cut(s) 70, 97, 388, 554
Sau3AI GATC 7 cut(s) 7, 273, 340, 451, 484, 529, 715
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 2 cut(s) 326, 581
ScrFI CCNGG 1 cut(s) 298
SetI ASST 8 cut(s) 154, 283, 555, 833, 891, 916, 930, 1002
SfaNI GCATC 2 cut(s) 108, 973
Sfr274I CTCGAG 1 cut(s) 569
SinI GGWCC 1 cut(s) 170
SlaI CTCGAG 1 cut(s) 569
SmiMI CAYNNNNRTG 2 cut(s) 183, 687
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
SphI GCATGC 1 cut(s) 964
SsiI CCGC 1 cut(s) 748
SspI AATATT 3 cut(s) 25, 853, 1047
SspMI CTAG 2 cut(s) 542, 1081
StyD4I CCNGG 1 cut(s) 296
StyI CCWWGG 2 cut(s) 277, 557
TaaI ACNGT 3 cut(s) 222, 445, 478
TaqI TCGA 2 cut(s) 570, 939
TfiI GAWTC 5 cut(s) 74, 434, 467, 758, 767
Tru1I TTAA 6 cut(s) 263, 348, 627, 845, 861, 989
Tru9I TTAA 6 cut(s) 263, 348, 627, 845, 861, 989
TscAI CASTG 1 cut(s) 1069
TseFI GTSAC 1 cut(s) 1034
TseI GCWGC 4 cut(s) 69, 96, 387, 553
Tsp45I GTSAC 1 cut(s) 1034
TspDTI ATGAA 2 cut(s) 221, 863
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 1 cut(s) 1069
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 4 cut(s) 359, 699, 752, 818
XceI RCATGY 2 cut(s) 511, 964
XhoI CTCGAG 1 cut(s) 569
XspI CTAG 2 cut(s) 542, 1081
Zsp2I ATGCAT 2 cut(s) 966, 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.