RchiOBHm_Chr4g0411021

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000188
Physical Location & Seq
Reverse (-)
34838292 .. 34838516
225 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38189

Sequence Viewer

Length: 225 bp
ATGGTTCTCAGTTTTTCAACAAGCTTCGCAATGACACCTTGCTTCTTCTATGATGAACTCTGTGCTGAAGTGAATAGATACTATGAAGTTACATGGAACAAGTGGCTAGAAAAGTTGAAGAGTGAGTATTTTGCTAACCCATGGACAGTTATTTCATTGATTGCAGCAAGTATCCTTCTCGGTCTCACCATAGTGCAGACTTTTGGAATTAATATCTACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.65

Weight (kDa)

4.71

Isoelectric Point (pI)

24.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 15 - 60 1.8e-12 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 87
AgsI TTSAA 2 cut(s) 18, 118
AleI CACNNNNGTG 1 cut(s) 191
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 164
AseI ATTAAT 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 178
BbvI GCAGC 1 cut(s) 176
BciVI GTATCC 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 107
BfuI GTATCC 1 cut(s) 182
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 140
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 22
BseXI GCAGC 1 cut(s) 176
BsgI GTGCAG 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 188
Bso31I GGTCTC 1 cut(s) 188
Bsp19I CCATGG 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 8
BstDSI CCRYGG 1 cut(s) 140
BstMAI GTCTC 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 176
BsuI GTATCC 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 140
CviAII CATG 2 cut(s) 93, 141
CviJI RGCY 2 cut(s) 24, 106
CviKI_1 RGCY 2 cut(s) 24, 106
DdeI CTNAG 1 cut(s) 8
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 2 cut(s) 96, 144
FaiI YATR 5 cut(s) 51, 84, 94, 142, 191
FatI CATG 2 cut(s) 92, 140
Fnu4HI GCNGC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 1 cut(s) 107
GluI GCNGC 1 cut(s) 165
Hin1II CATG 2 cut(s) 96, 144
HindIII AAGCTT 1 cut(s) 22
HphI GGTGA 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 164, 196
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 2 cut(s) 96, 144
Lsp1109I GCAGC 1 cut(s) 176
MaeI CTAG 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 88
MboII GAAGA 2 cut(s) 37, 130
MluCI AATT 1 cut(s) 207
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 191
NcoI CCATGG 1 cut(s) 140
NlaIII CATG 2 cut(s) 96, 144
OliI CACNNNNGTG 1 cut(s) 191
PkrI GCNGC 1 cut(s) 166
PshBI ATTAAT 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 191
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 165
SetI ASST 2 cut(s) 26, 40
SgeI CNNG 8 cut(s) 33, 51, 105, 112, 119, 153, 180, 191
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 1 cut(s) 207
SspMI CTAG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 1 cut(s) 148
TaqII GACCGA 1 cut(s) 170
TasI AATT 1 cut(s) 207
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 3 cut(s) 69, 99, 144
VspI ATTAAT 1 cut(s) 210
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.